Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00426 and MIT1002_00427 are separated by 165 nucleotides MIT1002_00427 and MIT1002_00428 are separated by 307 nucleotides
MIT1002_00426: MIT1002_00426 - Cation efflux system protein CzcA, at 460,814 to 463,960
_00426
MIT1002_00427: MIT1002_00427 - hypothetical protein, at 464,126 to 464,809
_00427
MIT1002_00428: MIT1002_00428 - Signal transduction histidine-protein kinase BarA, at 465,117 to 465,548
_00428
Position (kb) 464
465 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 463.127 kb on + strand, within MIT1002_00426 at 463.144 kb on + strand, within MIT1002_00426 at 463.149 kb on + strand, within MIT1002_00426 at 463.157 kb on - strand, within MIT1002_00426 at 463.271 kb on + strand, within MIT1002_00426 at 463.343 kb on - strand, within MIT1002_00426 at 463.434 kb on + strand, within MIT1002_00426 at 463.442 kb on - strand, within MIT1002_00426 at 463.442 kb on - strand, within MIT1002_00426 at 463.470 kb on + strand, within MIT1002_00426 at 463.473 kb on + strand, within MIT1002_00426 at 463.577 kb on - strand, within MIT1002_00426 at 463.582 kb on - strand, within MIT1002_00426 at 463.583 kb on - strand, within MIT1002_00426 at 463.583 kb on - strand, within MIT1002_00426 at 463.617 kb on + strand, within MIT1002_00426 at 463.617 kb on + strand, within MIT1002_00426 at 463.618 kb on + strand, within MIT1002_00426 at 463.646 kb on - strand at 463.702 kb on + strand at 463.702 kb on + strand at 463.710 kb on - strand at 463.710 kb on - strand at 463.824 kb on - strand at 463.853 kb on + strand at 463.853 kb on + strand at 463.861 kb on - strand at 463.886 kb on - strand at 464.067 kb on + strand at 464.188 kb on - strand at 464.190 kb on + strand at 464.195 kb on + strand, within MIT1002_00427 at 464.203 kb on - strand, within MIT1002_00427 at 464.203 kb on - strand, within MIT1002_00427 at 464.205 kb on + strand, within MIT1002_00427 at 464.205 kb on + strand, within MIT1002_00427 at 464.208 kb on - strand, within MIT1002_00427 at 464.225 kb on + strand, within MIT1002_00427 at 464.233 kb on - strand, within MIT1002_00427 at 464.262 kb on - strand, within MIT1002_00427 at 464.278 kb on + strand, within MIT1002_00427 at 464.351 kb on + strand, within MIT1002_00427 at 464.386 kb on - strand, within MIT1002_00427 at 464.408 kb on + strand, within MIT1002_00427 at 464.416 kb on - strand, within MIT1002_00427 at 464.427 kb on + strand, within MIT1002_00427 at 464.441 kb on - strand, within MIT1002_00427 at 464.539 kb on - strand, within MIT1002_00427 at 464.576 kb on + strand, within MIT1002_00427 at 464.599 kb on - strand, within MIT1002_00427 at 464.664 kb on - strand, within MIT1002_00427 at 464.749 kb on - strand at 464.751 kb on - strand at 464.803 kb on - strand at 465.072 kb on - strand at 465.076 kb on + strand at 465.473 kb on + strand, within MIT1002_00428
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 463,127 + MIT1002_00426 0.73 +0.4 463,144 + MIT1002_00426 0.74 -0.7 463,149 + MIT1002_00426 0.74 +0.7 463,157 - MIT1002_00426 0.74 -0.5 463,271 + MIT1002_00426 0.78 +0.3 463,343 - MIT1002_00426 0.80 -1.6 463,434 + MIT1002_00426 0.83 -2.3 463,442 - MIT1002_00426 0.84 -0.1 463,442 - MIT1002_00426 0.84 +0.7 463,470 + MIT1002_00426 0.84 -1.3 463,473 + MIT1002_00426 0.84 +0.2 463,577 - MIT1002_00426 0.88 +1.5 463,582 - MIT1002_00426 0.88 -2.4 463,583 - MIT1002_00426 0.88 -2.5 463,583 - MIT1002_00426 0.88 -1.4 463,617 + MIT1002_00426 0.89 -0.3 463,617 + MIT1002_00426 0.89 +0.2 463,618 + MIT1002_00426 0.89 +0.2 463,646 - +0.0 463,702 + -1.5 463,702 + +0.5 463,710 - -0.6 463,710 - +0.1 463,824 - +0.4 463,853 + -1.5 463,853 + -1.3 463,861 - -0.5 463,886 - -0.3 464,067 + -1.3 464,188 - +1.0 464,190 + +0.0 464,195 + MIT1002_00427 0.10 +0.2 464,203 - MIT1002_00427 0.11 +0.3 464,203 - MIT1002_00427 0.11 -0.3 464,205 + MIT1002_00427 0.12 +1.5 464,205 + MIT1002_00427 0.12 +1.2 464,208 - MIT1002_00427 0.12 -1.4 464,225 + MIT1002_00427 0.14 +0.2 464,233 - MIT1002_00427 0.16 -0.7 464,262 - MIT1002_00427 0.20 +0.3 464,278 + MIT1002_00427 0.22 +1.3 464,351 + MIT1002_00427 0.33 -0.7 464,386 - MIT1002_00427 0.38 +0.2 464,408 + MIT1002_00427 0.41 -1.2 464,416 - MIT1002_00427 0.42 -0.6 464,427 + MIT1002_00427 0.44 -0.9 464,441 - MIT1002_00427 0.46 -0.6 464,539 - MIT1002_00427 0.60 -2.7 464,576 + MIT1002_00427 0.66 -2.6 464,599 - MIT1002_00427 0.69 -1.8 464,664 - MIT1002_00427 0.79 +0.7 464,749 - -0.5 464,751 - +0.6 464,803 - -0.3 465,072 - +1.2 465,076 + +1.0 465,473 + MIT1002_00428 0.82 +6.8
Or see this region's nucleotide sequence