Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00234

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00233 and MIT1002_00234 are separated by 154 nucleotidesMIT1002_00234 and MIT1002_00235 are separated by 107 nucleotides MIT1002_00233: MIT1002_00233 - Dye resistance protein, at 261,403 to 262,110 _00233 MIT1002_00234: MIT1002_00234 - Sensor protein ZraS, at 262,265 to 263,911 _00234 MIT1002_00235: MIT1002_00235 - Glycogen synthase, at 264,019 to 265,443 _00235 Position (kb) 262 263 264Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 261.399 kb on + strandat 261.399 kb on + strandat 261.402 kb on - strandat 261.407 kb on - strandat 261.516 kb on + strand, within MIT1002_00233at 261.538 kb on + strand, within MIT1002_00233at 261.591 kb on - strand, within MIT1002_00233at 261.740 kb on - strand, within MIT1002_00233at 261.877 kb on + strand, within MIT1002_00233at 261.902 kb on + strand, within MIT1002_00233at 261.906 kb on - strand, within MIT1002_00233at 262.023 kb on + strand, within MIT1002_00233at 262.031 kb on - strand, within MIT1002_00233at 262.031 kb on - strand, within MIT1002_00233at 262.112 kb on + strandat 262.114 kb on + strandat 262.122 kb on - strandat 262.224 kb on - strandat 262.224 kb on - strandat 262.224 kb on - strandat 262.381 kb on - strandat 262.485 kb on + strand, within MIT1002_00234at 262.494 kb on + strand, within MIT1002_00234at 262.531 kb on + strand, within MIT1002_00234at 262.562 kb on - strand, within MIT1002_00234at 262.562 kb on - strand, within MIT1002_00234at 262.636 kb on + strand, within MIT1002_00234at 262.636 kb on + strand, within MIT1002_00234at 262.644 kb on - strand, within MIT1002_00234at 262.653 kb on + strand, within MIT1002_00234at 262.702 kb on - strand, within MIT1002_00234at 262.761 kb on + strand, within MIT1002_00234at 262.769 kb on - strand, within MIT1002_00234at 262.779 kb on - strand, within MIT1002_00234at 262.789 kb on - strand, within MIT1002_00234at 262.797 kb on + strand, within MIT1002_00234at 262.858 kb on + strand, within MIT1002_00234at 262.906 kb on + strand, within MIT1002_00234at 262.914 kb on - strand, within MIT1002_00234at 262.924 kb on - strand, within MIT1002_00234at 262.942 kb on + strand, within MIT1002_00234at 262.942 kb on + strand, within MIT1002_00234at 262.942 kb on + strand, within MIT1002_00234at 262.942 kb on + strand, within MIT1002_00234at 262.943 kb on + strand, within MIT1002_00234at 262.943 kb on + strand, within MIT1002_00234at 262.950 kb on - strand, within MIT1002_00234at 262.950 kb on - strand, within MIT1002_00234at 262.950 kb on - strand, within MIT1002_00234at 262.950 kb on - strand, within MIT1002_00234at 262.951 kb on - strand, within MIT1002_00234at 263.075 kb on - strand, within MIT1002_00234at 263.090 kb on - strand, within MIT1002_00234at 263.116 kb on + strand, within MIT1002_00234at 263.116 kb on + strand, within MIT1002_00234at 263.124 kb on - strand, within MIT1002_00234at 263.272 kb on + strand, within MIT1002_00234at 263.272 kb on + strand, within MIT1002_00234at 263.272 kb on + strand, within MIT1002_00234at 263.280 kb on - strand, within MIT1002_00234at 263.303 kb on + strand, within MIT1002_00234at 263.327 kb on - strand, within MIT1002_00234at 263.377 kb on - strand, within MIT1002_00234at 263.377 kb on - strand, within MIT1002_00234at 263.416 kb on + strand, within MIT1002_00234at 263.522 kb on + strand, within MIT1002_00234at 263.565 kb on + strand, within MIT1002_00234at 263.589 kb on - strand, within MIT1002_00234at 263.645 kb on - strand, within MIT1002_00234at 263.723 kb on + strand, within MIT1002_00234at 263.779 kb on - strandat 263.793 kb on + strandat 263.801 kb on - strandat 263.820 kb on - strandat 263.822 kb on + strandat 263.830 kb on - strandat 263.830 kb on - strandat 263.959 kb on + strandat 263.978 kb on + strandat 264.022 kb on - strandat 264.443 kb on - strand, within MIT1002_00235at 264.455 kb on - strand, within MIT1002_00235at 264.759 kb on + strand, within MIT1002_00235at 264.769 kb on + strand, within MIT1002_00235

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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261,399 + -0.5
261,399 + +0.6
261,402 - +0.8
261,407 - -0.9
261,516 + MIT1002_00233 0.16 -0.0
261,538 + MIT1002_00233 0.19 -1.9
261,591 - MIT1002_00233 0.27 -1.5
261,740 - MIT1002_00233 0.48 -0.6
261,877 + MIT1002_00233 0.67 -0.0
261,902 + MIT1002_00233 0.70 -0.6
261,906 - MIT1002_00233 0.71 -1.0
262,023 + MIT1002_00233 0.88 -3.1
262,031 - MIT1002_00233 0.89 -2.4
262,031 - MIT1002_00233 0.89 -0.4
262,112 + -1.0
262,114 + -2.1
262,122 - -0.6
262,224 - -1.6
262,224 - -0.5
262,224 - -0.0
262,381 - +1.7
262,485 + MIT1002_00234 0.13 +0.9
262,494 + MIT1002_00234 0.14 +0.2
262,531 + MIT1002_00234 0.16 +0.1
262,562 - MIT1002_00234 0.18 +1.2
262,562 - MIT1002_00234 0.18 +1.7
262,636 + MIT1002_00234 0.23 +0.2
262,636 + MIT1002_00234 0.23 +0.7
262,644 - MIT1002_00234 0.23 -1.2
262,653 + MIT1002_00234 0.24 -1.0
262,702 - MIT1002_00234 0.27 +1.5
262,761 + MIT1002_00234 0.30 -0.1
262,769 - MIT1002_00234 0.31 +1.6
262,779 - MIT1002_00234 0.31 -1.6
262,789 - MIT1002_00234 0.32 -0.4
262,797 + MIT1002_00234 0.32 +0.3
262,858 + MIT1002_00234 0.36 +0.5
262,906 + MIT1002_00234 0.39 +1.3
262,914 - MIT1002_00234 0.39 +0.2
262,924 - MIT1002_00234 0.40 -1.3
262,942 + MIT1002_00234 0.41 +1.4
262,942 + MIT1002_00234 0.41 +0.3
262,942 + MIT1002_00234 0.41 +0.6
262,942 + MIT1002_00234 0.41 +0.8
262,943 + MIT1002_00234 0.41 -0.1
262,943 + MIT1002_00234 0.41 +0.9
262,950 - MIT1002_00234 0.42 +0.0
262,950 - MIT1002_00234 0.42 +1.0
262,950 - MIT1002_00234 0.42 +1.0
262,950 - MIT1002_00234 0.42 -1.1
262,951 - MIT1002_00234 0.42 -0.3
263,075 - MIT1002_00234 0.49 -1.0
263,090 - MIT1002_00234 0.50 +1.6
263,116 + MIT1002_00234 0.52 +0.4
263,116 + MIT1002_00234 0.52 +1.9
263,124 - MIT1002_00234 0.52 -0.6
263,272 + MIT1002_00234 0.61 +1.1
263,272 + MIT1002_00234 0.61 +0.7
263,272 + MIT1002_00234 0.61 -0.4
263,280 - MIT1002_00234 0.62 -0.0
263,303 + MIT1002_00234 0.63 -1.0
263,327 - MIT1002_00234 0.64 +1.2
263,377 - MIT1002_00234 0.68 +0.4
263,377 - MIT1002_00234 0.68 +0.3
263,416 + MIT1002_00234 0.70 -0.2
263,522 + MIT1002_00234 0.76 +0.4
263,565 + MIT1002_00234 0.79 +0.9
263,589 - MIT1002_00234 0.80 +0.6
263,645 - MIT1002_00234 0.84 +1.6
263,723 + MIT1002_00234 0.89 +0.6
263,779 - -0.2
263,793 + +0.4
263,801 - -0.4
263,820 - +0.7
263,822 + +0.9
263,830 - +0.2
263,830 - -0.5
263,959 + +0.1
263,978 + +0.8
264,022 - -1.0
264,443 - MIT1002_00235 0.30 -2.9
264,455 - MIT1002_00235 0.31 -1.2
264,759 + MIT1002_00235 0.52 -0.0
264,769 + MIT1002_00235 0.53 -1.5

Or see this region's nucleotide sequence