Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00211 and MIT1002_00212 are separated by 27 nucleotides MIT1002_00212 and MIT1002_00213 are separated by 44 nucleotides MIT1002_00213 and MIT1002_00214 are separated by 22 nucleotides
MIT1002_00211: MIT1002_00211 - General secretion pathway protein F, at 234,625 to 235,860
_00211
MIT1002_00212: MIT1002_00212 - hypothetical protein, at 235,888 to 236,382
_00212
MIT1002_00213: MIT1002_00213 - Pilin, at 236,427 to 237,014
_00213
MIT1002_00214: MIT1002_00214 - Serogroup C1, at 237,037 to 237,549
_00214
Position (kb) 235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 234.968 kb on + strand, within MIT1002_00211 at 234.968 kb on + strand, within MIT1002_00211 at 234.976 kb on - strand, within MIT1002_00211 at 234.976 kb on - strand, within MIT1002_00211 at 234.976 kb on - strand, within MIT1002_00211 at 234.990 kb on + strand, within MIT1002_00211 at 234.998 kb on - strand, within MIT1002_00211 at 235.026 kb on - strand, within MIT1002_00211 at 235.091 kb on + strand, within MIT1002_00211 at 235.152 kb on - strand, within MIT1002_00211 at 235.261 kb on + strand, within MIT1002_00211 at 235.315 kb on - strand, within MIT1002_00211 at 235.427 kb on + strand, within MIT1002_00211 at 235.660 kb on + strand, within MIT1002_00211 at 235.668 kb on - strand, within MIT1002_00211 at 235.708 kb on - strand, within MIT1002_00211 at 235.708 kb on - strand, within MIT1002_00211 at 235.784 kb on + strand at 235.887 kb on - strand at 235.953 kb on - strand, within MIT1002_00212 at 235.993 kb on + strand, within MIT1002_00212 at 236.028 kb on + strand, within MIT1002_00212 at 236.036 kb on - strand, within MIT1002_00212 at 236.054 kb on + strand, within MIT1002_00212 at 236.072 kb on - strand, within MIT1002_00212 at 236.123 kb on + strand, within MIT1002_00212 at 236.133 kb on + strand, within MIT1002_00212 at 236.133 kb on + strand, within MIT1002_00212 at 236.141 kb on - strand, within MIT1002_00212 at 236.205 kb on - strand, within MIT1002_00212 at 236.294 kb on + strand, within MIT1002_00212 at 236.446 kb on + strand at 236.473 kb on - strand at 236.508 kb on + strand, within MIT1002_00213 at 236.518 kb on + strand, within MIT1002_00213 at 236.583 kb on + strand, within MIT1002_00213 at 236.613 kb on + strand, within MIT1002_00213 at 236.613 kb on + strand, within MIT1002_00213 at 236.621 kb on - strand, within MIT1002_00213 at 236.621 kb on - strand, within MIT1002_00213 at 236.621 kb on - strand, within MIT1002_00213 at 236.621 kb on - strand, within MIT1002_00213 at 236.629 kb on - strand, within MIT1002_00213 at 236.685 kb on + strand, within MIT1002_00213 at 236.702 kb on + strand, within MIT1002_00213 at 236.706 kb on - strand, within MIT1002_00213 at 236.719 kb on + strand, within MIT1002_00213 at 236.727 kb on - strand, within MIT1002_00213 at 236.869 kb on - strand, within MIT1002_00213 at 236.934 kb on - strand, within MIT1002_00213 at 236.999 kb on + strand at 237.062 kb on + strand at 237.070 kb on - strand at 237.070 kb on - strand at 237.070 kb on - strand at 237.107 kb on - strand, within MIT1002_00214 at 237.119 kb on + strand, within MIT1002_00214 at 237.174 kb on - strand, within MIT1002_00214 at 237.193 kb on - strand, within MIT1002_00214 at 237.231 kb on - strand, within MIT1002_00214 at 237.231 kb on - strand, within MIT1002_00214 at 237.265 kb on + strand, within MIT1002_00214 at 237.275 kb on + strand, within MIT1002_00214 at 237.283 kb on - strand, within MIT1002_00214 at 237.292 kb on + strand, within MIT1002_00214 at 237.292 kb on + strand, within MIT1002_00214 at 237.292 kb on + strand, within MIT1002_00214 at 237.292 kb on + strand, within MIT1002_00214 at 237.300 kb on - strand, within MIT1002_00214 at 237.300 kb on - strand, within MIT1002_00214 at 237.300 kb on - strand, within MIT1002_00214 at 237.359 kb on - strand, within MIT1002_00214
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 234,968 + MIT1002_00211 0.28 +2.5 234,968 + MIT1002_00211 0.28 +0.4 234,976 - MIT1002_00211 0.28 -0.4 234,976 - MIT1002_00211 0.28 -1.6 234,976 - MIT1002_00211 0.28 -0.8 234,990 + MIT1002_00211 0.30 -0.2 234,998 - MIT1002_00211 0.30 -0.4 235,026 - MIT1002_00211 0.32 +1.0 235,091 + MIT1002_00211 0.38 +0.8 235,152 - MIT1002_00211 0.43 +0.7 235,261 + MIT1002_00211 0.51 -0.6 235,315 - MIT1002_00211 0.56 +0.0 235,427 + MIT1002_00211 0.65 -1.7 235,660 + MIT1002_00211 0.84 +0.9 235,668 - MIT1002_00211 0.84 -0.7 235,708 - MIT1002_00211 0.88 -1.5 235,708 - MIT1002_00211 0.88 +0.2 235,784 + -1.9 235,887 - -0.1 235,953 - MIT1002_00212 0.13 -1.0 235,993 + MIT1002_00212 0.21 -0.0 236,028 + MIT1002_00212 0.28 -0.8 236,036 - MIT1002_00212 0.30 +0.2 236,054 + MIT1002_00212 0.34 -0.1 236,072 - MIT1002_00212 0.37 -0.1 236,123 + MIT1002_00212 0.47 -1.0 236,133 + MIT1002_00212 0.49 -1.1 236,133 + MIT1002_00212 0.49 +0.7 236,141 - MIT1002_00212 0.51 +0.6 236,205 - MIT1002_00212 0.64 +0.1 236,294 + MIT1002_00212 0.82 +0.2 236,446 + +0.5 236,473 - -0.5 236,508 + MIT1002_00213 0.14 -0.6 236,518 + MIT1002_00213 0.15 -0.4 236,583 + MIT1002_00213 0.27 -1.0 236,613 + MIT1002_00213 0.32 -0.2 236,613 + MIT1002_00213 0.32 -0.8 236,621 - MIT1002_00213 0.33 -0.7 236,621 - MIT1002_00213 0.33 +0.4 236,621 - MIT1002_00213 0.33 -3.5 236,621 - MIT1002_00213 0.33 -2.1 236,629 - MIT1002_00213 0.34 +0.6 236,685 + MIT1002_00213 0.44 -0.9 236,702 + MIT1002_00213 0.47 -1.4 236,706 - MIT1002_00213 0.47 -1.2 236,719 + MIT1002_00213 0.50 -1.4 236,727 - MIT1002_00213 0.51 -2.4 236,869 - MIT1002_00213 0.75 +0.8 236,934 - MIT1002_00213 0.86 +1.4 236,999 + -0.1 237,062 + -1.3 237,070 - -1.2 237,070 - -0.0 237,070 - +1.6 237,107 - MIT1002_00214 0.14 +0.1 237,119 + MIT1002_00214 0.16 +0.3 237,174 - MIT1002_00214 0.27 -0.9 237,193 - MIT1002_00214 0.30 -1.4 237,231 - MIT1002_00214 0.38 -1.0 237,231 - MIT1002_00214 0.38 +0.9 237,265 + MIT1002_00214 0.44 -0.3 237,275 + MIT1002_00214 0.46 +0.4 237,283 - MIT1002_00214 0.48 -0.6 237,292 + MIT1002_00214 0.50 +0.0 237,292 + MIT1002_00214 0.50 -0.2 237,292 + MIT1002_00214 0.50 +3.9 237,292 + MIT1002_00214 0.50 -0.1 237,300 - MIT1002_00214 0.51 +1.2 237,300 - MIT1002_00214 0.51 -0.2 237,300 - MIT1002_00214 0.51 -0.3 237,359 - MIT1002_00214 0.63 +2.2
Or see this region's nucleotide sequence