Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00177

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00176 and MIT1002_00177 are separated by 76 nucleotidesMIT1002_00177 and MIT1002_00178 are separated by 64 nucleotidesMIT1002_00178 and MIT1002_00179 are separated by 203 nucleotides MIT1002_00176: MIT1002_00176 - Tail-specific protease precursor, at 190,074 to 191,309 _00176 MIT1002_00177: MIT1002_00177 - Heat shock protein 70, at 191,386 to 192,888 _00177 MIT1002_00178: MIT1002_00178 - hypothetical protein, at 192,953 to 193,120 _00178 MIT1002_00179: MIT1002_00179 - Excinuclease ABC subunit A, at 193,324 to 196,155 _00179 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 190.430 kb on + strand, within MIT1002_00176at 190.430 kb on + strand, within MIT1002_00176at 190.461 kb on - strand, within MIT1002_00176at 190.555 kb on - strand, within MIT1002_00176at 190.563 kb on + strand, within MIT1002_00176at 190.571 kb on - strand, within MIT1002_00176at 190.586 kb on + strand, within MIT1002_00176at 190.586 kb on + strand, within MIT1002_00176at 190.740 kb on - strand, within MIT1002_00176at 190.745 kb on - strand, within MIT1002_00176at 190.797 kb on + strand, within MIT1002_00176at 190.805 kb on - strand, within MIT1002_00176at 190.818 kb on + strand, within MIT1002_00176at 190.818 kb on + strand, within MIT1002_00176at 190.818 kb on + strand, within MIT1002_00176at 190.818 kb on + strand, within MIT1002_00176at 190.826 kb on - strand, within MIT1002_00176at 190.826 kb on - strand, within MIT1002_00176at 190.839 kb on - strand, within MIT1002_00176at 190.904 kb on + strand, within MIT1002_00176at 190.952 kb on - strand, within MIT1002_00176at 190.965 kb on + strand, within MIT1002_00176at 190.973 kb on - strand, within MIT1002_00176at 190.973 kb on - strand, within MIT1002_00176at 190.973 kb on - strand, within MIT1002_00176at 191.039 kb on - strand, within MIT1002_00176at 191.055 kb on - strand, within MIT1002_00176at 191.058 kb on + strand, within MIT1002_00176at 191.071 kb on + strand, within MIT1002_00176at 191.071 kb on - strand, within MIT1002_00176at 191.251 kb on + strandat 191.251 kb on + strandat 191.251 kb on + strandat 191.302 kb on - strandat 191.327 kb on + strandat 191.404 kb on + strandat 191.412 kb on - strandat 191.468 kb on - strandat 191.468 kb on - strandat 191.586 kb on + strand, within MIT1002_00177at 191.689 kb on + strand, within MIT1002_00177at 191.731 kb on - strand, within MIT1002_00177at 191.739 kb on - strand, within MIT1002_00177at 191.772 kb on + strand, within MIT1002_00177at 191.780 kb on - strand, within MIT1002_00177at 191.812 kb on + strand, within MIT1002_00177at 191.820 kb on - strand, within MIT1002_00177at 191.820 kb on - strand, within MIT1002_00177at 191.871 kb on - strand, within MIT1002_00177at 191.871 kb on - strand, within MIT1002_00177at 191.942 kb on + strand, within MIT1002_00177at 191.942 kb on + strand, within MIT1002_00177at 191.950 kb on - strand, within MIT1002_00177at 191.950 kb on - strand, within MIT1002_00177at 191.954 kb on + strand, within MIT1002_00177at 191.954 kb on + strand, within MIT1002_00177at 191.954 kb on + strand, within MIT1002_00177at 191.954 kb on + strand, within MIT1002_00177at 191.959 kb on + strand, within MIT1002_00177at 191.962 kb on - strand, within MIT1002_00177at 191.962 kb on - strand, within MIT1002_00177at 191.962 kb on - strand, within MIT1002_00177at 191.962 kb on - strand, within MIT1002_00177at 192.007 kb on + strand, within MIT1002_00177at 192.029 kb on + strand, within MIT1002_00177at 192.031 kb on + strand, within MIT1002_00177at 192.037 kb on - strand, within MIT1002_00177at 192.050 kb on - strand, within MIT1002_00177at 192.050 kb on - strand, within MIT1002_00177at 192.109 kb on + strand, within MIT1002_00177at 192.114 kb on + strand, within MIT1002_00177at 192.169 kb on - strand, within MIT1002_00177at 192.169 kb on - strand, within MIT1002_00177at 192.217 kb on - strand, within MIT1002_00177at 192.219 kb on - strand, within MIT1002_00177at 192.224 kb on - strand, within MIT1002_00177at 192.280 kb on + strand, within MIT1002_00177at 192.355 kb on - strand, within MIT1002_00177at 192.406 kb on + strand, within MIT1002_00177at 192.413 kb on + strand, within MIT1002_00177at 192.414 kb on - strand, within MIT1002_00177at 192.451 kb on + strand, within MIT1002_00177at 192.451 kb on + strand, within MIT1002_00177at 192.452 kb on - strand, within MIT1002_00177at 192.476 kb on - strand, within MIT1002_00177at 192.554 kb on + strand, within MIT1002_00177at 192.591 kb on + strand, within MIT1002_00177at 192.754 kb on + strandat 192.819 kb on - strandat 192.824 kb on - strandat 192.836 kb on - strandat 192.856 kb on + strandat 192.864 kb on - strandat 192.864 kb on - strandat 192.906 kb on + strandat 192.920 kb on - strandat 192.926 kb on - strandat 192.943 kb on - strandat 192.995 kb on + strand, within MIT1002_00178at 193.003 kb on - strand, within MIT1002_00178at 193.007 kb on + strand, within MIT1002_00178at 193.022 kb on - strand, within MIT1002_00178at 193.057 kb on + strand, within MIT1002_00178at 193.070 kb on - strand, within MIT1002_00178at 193.082 kb on - strand, within MIT1002_00178at 193.097 kb on + strand, within MIT1002_00178at 193.241 kb on - strandat 193.330 kb on - strandat 193.394 kb on + strandat 193.411 kb on + strandat 193.411 kb on + strandat 193.414 kb on - strandat 193.439 kb on + strandat 193.458 kb on + strandat 193.466 kb on + strandat 193.474 kb on - strandat 193.476 kb on + strandat 193.476 kb on + strandat 193.484 kb on - strandat 193.484 kb on - strandat 193.484 kb on - strandat 193.513 kb on - strandat 193.534 kb on - strandat 193.538 kb on + strandat 193.546 kb on - strandat 193.546 kb on - strandat 193.548 kb on + strandat 193.556 kb on - strandat 193.599 kb on - strandat 193.658 kb on - strand, within MIT1002_00179at 193.678 kb on + strand, within MIT1002_00179at 193.713 kb on + strand, within MIT1002_00179at 193.713 kb on + strand, within MIT1002_00179at 193.720 kb on + strand, within MIT1002_00179at 193.721 kb on - strand, within MIT1002_00179at 193.721 kb on - strand, within MIT1002_00179at 193.819 kb on - strand, within MIT1002_00179at 193.840 kb on + strand, within MIT1002_00179at 193.884 kb on - strand, within MIT1002_00179

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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190,430 + MIT1002_00176 0.29 +0.6
190,430 + MIT1002_00176 0.29 -0.8
190,461 - MIT1002_00176 0.31 -1.1
190,555 - MIT1002_00176 0.39 +0.7
190,563 + MIT1002_00176 0.40 +0.1
190,571 - MIT1002_00176 0.40 -1.4
190,586 + MIT1002_00176 0.41 +1.1
190,586 + MIT1002_00176 0.41 -1.5
190,740 - MIT1002_00176 0.54 +2.0
190,745 - MIT1002_00176 0.54 +0.1
190,797 + MIT1002_00176 0.58 +0.8
190,805 - MIT1002_00176 0.59 +0.4
190,818 + MIT1002_00176 0.60 -0.1
190,818 + MIT1002_00176 0.60 -1.4
190,818 + MIT1002_00176 0.60 -0.7
190,818 + MIT1002_00176 0.60 -0.1
190,826 - MIT1002_00176 0.61 +0.8
190,826 - MIT1002_00176 0.61 +0.2
190,839 - MIT1002_00176 0.62 -1.0
190,904 + MIT1002_00176 0.67 +0.4
190,952 - MIT1002_00176 0.71 -0.1
190,965 + MIT1002_00176 0.72 +0.0
190,973 - MIT1002_00176 0.73 +0.2
190,973 - MIT1002_00176 0.73 -2.7
190,973 - MIT1002_00176 0.73 +0.4
191,039 - MIT1002_00176 0.78 -0.6
191,055 - MIT1002_00176 0.79 +0.6
191,058 + MIT1002_00176 0.80 +2.0
191,071 + MIT1002_00176 0.81 -0.8
191,071 - MIT1002_00176 0.81 -0.8
191,251 + +0.6
191,251 + -0.4
191,251 + -0.3
191,302 - -0.5
191,327 + -0.8
191,404 + -0.6
191,412 - +0.1
191,468 - -0.1
191,468 - +1.6
191,586 + MIT1002_00177 0.13 +0.3
191,689 + MIT1002_00177 0.20 +0.7
191,731 - MIT1002_00177 0.23 +0.2
191,739 - MIT1002_00177 0.23 -3.0
191,772 + MIT1002_00177 0.26 -1.1
191,780 - MIT1002_00177 0.26 -0.2
191,812 + MIT1002_00177 0.28 -0.7
191,820 - MIT1002_00177 0.29 +0.4
191,820 - MIT1002_00177 0.29 -0.1
191,871 - MIT1002_00177 0.32 -3.6
191,871 - MIT1002_00177 0.32 -0.0
191,942 + MIT1002_00177 0.37 +0.3
191,942 + MIT1002_00177 0.37 -1.0
191,950 - MIT1002_00177 0.38 +0.5
191,950 - MIT1002_00177 0.38 +0.2
191,954 + MIT1002_00177 0.38 -0.1
191,954 + MIT1002_00177 0.38 -0.4
191,954 + MIT1002_00177 0.38 -1.2
191,954 + MIT1002_00177 0.38 -0.4
191,959 + MIT1002_00177 0.38 +1.2
191,962 - MIT1002_00177 0.38 -2.9
191,962 - MIT1002_00177 0.38 +0.2
191,962 - MIT1002_00177 0.38 +2.0
191,962 - MIT1002_00177 0.38 -1.6
192,007 + MIT1002_00177 0.41 -0.9
192,029 + MIT1002_00177 0.43 +0.1
192,031 + MIT1002_00177 0.43 -1.7
192,037 - MIT1002_00177 0.43 +0.4
192,050 - MIT1002_00177 0.44 +0.2
192,050 - MIT1002_00177 0.44 +0.5
192,109 + MIT1002_00177 0.48 -2.7
192,114 + MIT1002_00177 0.48 +0.9
192,169 - MIT1002_00177 0.52 +0.6
192,169 - MIT1002_00177 0.52 -0.2
192,217 - MIT1002_00177 0.55 +0.5
192,219 - MIT1002_00177 0.55 +1.1
192,224 - MIT1002_00177 0.56 -0.3
192,280 + MIT1002_00177 0.59 +1.6
192,355 - MIT1002_00177 0.64 -0.5
192,406 + MIT1002_00177 0.68 +1.5
192,413 + MIT1002_00177 0.68 -0.4
192,414 - MIT1002_00177 0.68 +0.6
192,451 + MIT1002_00177 0.71 -2.4
192,451 + MIT1002_00177 0.71 +0.2
192,452 - MIT1002_00177 0.71 +0.2
192,476 - MIT1002_00177 0.73 +0.1
192,554 + MIT1002_00177 0.78 -0.4
192,591 + MIT1002_00177 0.80 +1.6
192,754 + -1.1
192,819 - +2.1
192,824 - +0.3
192,836 - -0.1
192,856 + +0.1
192,864 - -0.5
192,864 - +0.4
192,906 + +0.9
192,920 - +0.1
192,926 - +0.7
192,943 - +0.0
192,995 + MIT1002_00178 0.25 -0.3
193,003 - MIT1002_00178 0.30 -0.9
193,007 + MIT1002_00178 0.32 -0.3
193,022 - MIT1002_00178 0.41 -0.3
193,057 + MIT1002_00178 0.62 +0.2
193,070 - MIT1002_00178 0.70 +0.5
193,082 - MIT1002_00178 0.77 -0.3
193,097 + MIT1002_00178 0.86 -0.4
193,241 - -0.4
193,330 - +1.0
193,394 + -0.2
193,411 + -1.0
193,411 + -0.2
193,414 - -0.1
193,439 + +0.8
193,458 + -0.3
193,466 + -1.0
193,474 - -0.5
193,476 + -1.0
193,476 + -1.7
193,484 - +0.6
193,484 - +1.4
193,484 - -0.1
193,513 - -0.6
193,534 - -0.7
193,538 + +2.0
193,546 - +0.6
193,546 - -0.4
193,548 + -0.0
193,556 - -0.9
193,599 - -0.9
193,658 - MIT1002_00179 0.12 +0.2
193,678 + MIT1002_00179 0.12 -0.1
193,713 + MIT1002_00179 0.14 +0.8
193,713 + MIT1002_00179 0.14 -0.3
193,720 + MIT1002_00179 0.14 +0.5
193,721 - MIT1002_00179 0.14 +0.7
193,721 - MIT1002_00179 0.14 +1.6
193,819 - MIT1002_00179 0.17 +0.1
193,840 + MIT1002_00179 0.18 -0.7
193,884 - MIT1002_00179 0.20 -0.4

Or see this region's nucleotide sequence