Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00153

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00152 and MIT1002_00153 are separated by 42 nucleotidesMIT1002_00153 and MIT1002_00154 are separated by 463 nucleotides MIT1002_00152: MIT1002_00152 - putative diguanylate cyclase YdaM, at 166,842 to 168,119 _00152 MIT1002_00153: MIT1002_00153 - DNA helicase II, at 168,162 to 170,333 _00153 MIT1002_00154: MIT1002_00154 - Serine acetyltransferase, at 170,797 to 171,609 _00154 Position (kb) 168 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2at 167.238 kb on + strand, within MIT1002_00152at 167.284 kb on - strand, within MIT1002_00152at 167.285 kb on + strand, within MIT1002_00152at 167.291 kb on - strand, within MIT1002_00152at 167.340 kb on - strand, within MIT1002_00152at 167.352 kb on - strand, within MIT1002_00152at 167.404 kb on - strand, within MIT1002_00152at 167.417 kb on + strand, within MIT1002_00152at 167.417 kb on + strand, within MIT1002_00152at 167.425 kb on - strand, within MIT1002_00152at 167.476 kb on + strand, within MIT1002_00152at 167.478 kb on + strand, within MIT1002_00152at 167.484 kb on - strand, within MIT1002_00152at 167.628 kb on + strand, within MIT1002_00152at 167.657 kb on - strand, within MIT1002_00152at 167.674 kb on - strand, within MIT1002_00152at 167.725 kb on - strand, within MIT1002_00152at 167.794 kb on - strand, within MIT1002_00152at 167.899 kb on - strand, within MIT1002_00152at 167.966 kb on + strand, within MIT1002_00152at 168.035 kb on + strandat 168.035 kb on + strandat 168.036 kb on + strandat 168.036 kb on + strandat 168.036 kb on + strandat 168.036 kb on + strandat 168.036 kb on + strandat 168.041 kb on + strandat 168.043 kb on - strandat 168.044 kb on - strandat 168.071 kb on + strandat 168.079 kb on - strandat 168.107 kb on - strandat 168.141 kb on - strandat 168.245 kb on + strandat 168.293 kb on + strandat 168.299 kb on - strandat 168.301 kb on - strandat 168.363 kb on + strandat 168.371 kb on - strandat 168.456 kb on - strand, within MIT1002_00153at 168.472 kb on - strand, within MIT1002_00153at 168.522 kb on - strand, within MIT1002_00153at 168.610 kb on - strand, within MIT1002_00153at 168.659 kb on - strand, within MIT1002_00153at 168.689 kb on - strand, within MIT1002_00153at 168.695 kb on + strand, within MIT1002_00153at 168.696 kb on + strand, within MIT1002_00153at 168.778 kb on - strand, within MIT1002_00153at 168.780 kb on + strand, within MIT1002_00153at 168.852 kb on - strand, within MIT1002_00153at 168.852 kb on - strand, within MIT1002_00153at 168.916 kb on - strand, within MIT1002_00153at 168.952 kb on - strand, within MIT1002_00153at 168.959 kb on - strand, within MIT1002_00153at 169.029 kb on + strand, within MIT1002_00153at 169.045 kb on + strand, within MIT1002_00153at 169.055 kb on - strand, within MIT1002_00153at 169.215 kb on - strand, within MIT1002_00153at 169.254 kb on - strand, within MIT1002_00153at 169.254 kb on - strand, within MIT1002_00153at 169.286 kb on + strand, within MIT1002_00153at 169.618 kb on + strand, within MIT1002_00153at 169.626 kb on - strand, within MIT1002_00153at 169.626 kb on - strand, within MIT1002_00153at 169.626 kb on - strand, within MIT1002_00153at 169.875 kb on - strand, within MIT1002_00153at 169.877 kb on - strand, within MIT1002_00153at 169.929 kb on - strand, within MIT1002_00153at 169.948 kb on - strand, within MIT1002_00153at 170.087 kb on - strand, within MIT1002_00153at 170.116 kb on - strandat 170.154 kb on - strandat 170.209 kb on - strandat 170.226 kb on + strandat 170.284 kb on + strandat 170.326 kb on - strandat 170.335 kb on - strandat 170.343 kb on - strandat 170.357 kb on + strandat 170.365 kb on - strandat 170.367 kb on - strandat 170.400 kb on + strandat 170.400 kb on + strandat 170.493 kb on + strandat 170.502 kb on + strandat 170.510 kb on - strandat 170.536 kb on + strandat 170.544 kb on - strandat 170.574 kb on + strandat 170.600 kb on - strandat 170.717 kb on - strandat 170.793 kb on + strandat 170.894 kb on + strand, within MIT1002_00154at 170.919 kb on - strand, within MIT1002_00154at 170.936 kb on + strand, within MIT1002_00154at 170.944 kb on - strand, within MIT1002_00154at 171.033 kb on - strand, within MIT1002_00154at 171.133 kb on + strand, within MIT1002_00154at 171.138 kb on - strand, within MIT1002_00154at 171.139 kb on - strand, within MIT1002_00154at 171.281 kb on + strand, within MIT1002_00154at 171.299 kb on + strand, within MIT1002_00154at 171.315 kb on - strand, within MIT1002_00154

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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167,238 + MIT1002_00152 0.31 +0.4
167,284 - MIT1002_00152 0.35 +1.3
167,285 + MIT1002_00152 0.35 -1.5
167,291 - MIT1002_00152 0.35 +1.7
167,340 - MIT1002_00152 0.39 +0.8
167,352 - MIT1002_00152 0.40 -0.7
167,404 - MIT1002_00152 0.44 +1.5
167,417 + MIT1002_00152 0.45 +1.3
167,417 + MIT1002_00152 0.45 -0.8
167,425 - MIT1002_00152 0.46 -0.3
167,476 + MIT1002_00152 0.50 +1.2
167,478 + MIT1002_00152 0.50 -1.3
167,484 - MIT1002_00152 0.50 +0.2
167,628 + MIT1002_00152 0.62 -0.5
167,657 - MIT1002_00152 0.64 -0.2
167,674 - MIT1002_00152 0.65 +0.3
167,725 - MIT1002_00152 0.69 +0.7
167,794 - MIT1002_00152 0.74 +0.2
167,899 - MIT1002_00152 0.83 +2.5
167,966 + MIT1002_00152 0.88 -0.5
168,035 + +0.6
168,035 + +0.5
168,036 + +0.1
168,036 + +0.4
168,036 + -0.2
168,036 + +0.2
168,036 + -0.3
168,041 + -0.7
168,043 - +0.5
168,044 - +0.0
168,071 + +0.7
168,079 - -2.3
168,107 - +0.5
168,141 - +0.3
168,245 + +0.7
168,293 + +0.3
168,299 - +1.1
168,301 - +1.7
168,363 + -0.3
168,371 - +1.5
168,456 - MIT1002_00153 0.14 -1.8
168,472 - MIT1002_00153 0.14 -1.4
168,522 - MIT1002_00153 0.17 -1.2
168,610 - MIT1002_00153 0.21 -1.6
168,659 - MIT1002_00153 0.23 -0.4
168,689 - MIT1002_00153 0.24 -2.4
168,695 + MIT1002_00153 0.25 -1.7
168,696 + MIT1002_00153 0.25 -1.4
168,778 - MIT1002_00153 0.28 -1.3
168,780 + MIT1002_00153 0.28 -1.1
168,852 - MIT1002_00153 0.32 -0.3
168,852 - MIT1002_00153 0.32 +0.2
168,916 - MIT1002_00153 0.35 -0.4
168,952 - MIT1002_00153 0.36 +0.7
168,959 - MIT1002_00153 0.37 -2.1
169,029 + MIT1002_00153 0.40 -1.6
169,045 + MIT1002_00153 0.41 -2.3
169,055 - MIT1002_00153 0.41 -2.2
169,215 - MIT1002_00153 0.48 -1.4
169,254 - MIT1002_00153 0.50 -1.0
169,254 - MIT1002_00153 0.50 -0.6
169,286 + MIT1002_00153 0.52 +0.6
169,618 + MIT1002_00153 0.67 -0.8
169,626 - MIT1002_00153 0.67 -2.3
169,626 - MIT1002_00153 0.67 -0.8
169,626 - MIT1002_00153 0.67 -0.6
169,875 - MIT1002_00153 0.79 -1.2
169,877 - MIT1002_00153 0.79 +0.1
169,929 - MIT1002_00153 0.81 +0.8
169,948 - MIT1002_00153 0.82 +0.3
170,087 - MIT1002_00153 0.89 -0.4
170,116 - -0.1
170,154 - -0.5
170,209 - +0.1
170,226 + +0.6
170,284 + +0.5
170,326 - -2.3
170,335 - -0.4
170,343 - -0.8
170,357 + -0.8
170,365 - -1.2
170,367 - -0.1
170,400 + +0.7
170,400 + +1.5
170,493 + -0.1
170,502 + +0.1
170,510 - -0.2
170,536 + +0.0
170,544 - +0.8
170,574 + -0.1
170,600 - +0.4
170,717 - -1.3
170,793 + -0.5
170,894 + MIT1002_00154 0.12 -1.5
170,919 - MIT1002_00154 0.15 +0.1
170,936 + MIT1002_00154 0.17 -1.6
170,944 - MIT1002_00154 0.18 -1.5
171,033 - MIT1002_00154 0.29 -1.8
171,133 + MIT1002_00154 0.41 -2.6
171,138 - MIT1002_00154 0.42 +0.4
171,139 - MIT1002_00154 0.42 -2.0
171,281 + MIT1002_00154 0.60 -1.4
171,299 + MIT1002_00154 0.62 -0.4
171,315 - MIT1002_00154 0.64 -0.8

Or see this region's nucleotide sequence