Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42590 and QEN71_RS42595 are separated by 464 nucleotides QEN71_RS42595 and QEN71_RS42600 are separated by 216 nucleotides QEN71_RS42600 and QEN71_RS42605 are separated by 606 nucleotides
QEN71_RS42590: QEN71_RS42590 - isochorismatase family cysteine hydrolase, at 607,158 to 607,745
_RS42590
QEN71_RS42595: QEN71_RS42595 - GNAT family N-acetyltransferase, at 608,210 to 608,791
_RS42595
QEN71_RS42600: QEN71_RS42600 - hypothetical protein, at 609,008 to 609,169
_RS42600
QEN71_RS42605: QEN71_RS42605 - IS630 family transposase, at 609,776 to 610,026
_RS42605
Position (kb) 608
609 Strain fitness (log2 ratio) -2
-1
0
1 at 607.246 kb on + strand, within QEN71_RS42590 at 607.247 kb on - strand, within QEN71_RS42590 at 607.327 kb on + strand, within QEN71_RS42590 at 607.327 kb on + strand, within QEN71_RS42590 at 607.445 kb on - strand, within QEN71_RS42590 at 607.445 kb on - strand, within QEN71_RS42590 at 607.506 kb on + strand, within QEN71_RS42590 at 607.507 kb on - strand, within QEN71_RS42590 at 607.507 kb on - strand, within QEN71_RS42590 at 607.543 kb on + strand, within QEN71_RS42590 at 607.543 kb on + strand, within QEN71_RS42590 at 607.552 kb on + strand, within QEN71_RS42590 at 607.696 kb on - strand at 607.766 kb on - strand at 607.991 kb on + strand at 607.991 kb on + strand at 607.992 kb on - strand at 608.073 kb on + strand at 608.073 kb on + strand at 608.101 kb on - strand at 608.105 kb on + strand at 608.105 kb on + strand at 608.105 kb on + strand at 608.106 kb on - strand at 608.106 kb on - strand at 608.106 kb on - strand at 608.106 kb on - strand at 608.307 kb on + strand, within QEN71_RS42595 at 608.308 kb on - strand, within QEN71_RS42595 at 608.328 kb on + strand, within QEN71_RS42595 at 608.420 kb on + strand, within QEN71_RS42595 at 608.420 kb on + strand, within QEN71_RS42595 at 608.421 kb on - strand, within QEN71_RS42595 at 608.435 kb on - strand, within QEN71_RS42595 at 608.435 kb on - strand, within QEN71_RS42595 at 608.447 kb on + strand, within QEN71_RS42595 at 608.447 kb on + strand, within QEN71_RS42595 at 608.447 kb on + strand, within QEN71_RS42595 at 608.448 kb on - strand, within QEN71_RS42595 at 608.830 kb on + strand at 608.830 kb on + strand at 609.159 kb on - strand at 609.232 kb on + strand at 609.236 kb on + strand at 609.236 kb on + strand at 609.237 kb on - strand at 609.237 kb on - strand at 609.237 kb on - strand at 609.289 kb on - strand at 609.355 kb on - strand at 609.367 kb on + strand at 609.368 kb on - strand at 609.390 kb on - strand at 609.480 kb on + strand at 609.481 kb on - strand at 609.604 kb on - strand at 609.670 kb on - strand at 609.758 kb on + strand at 609.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 607,246 + QEN71_RS42590 0.15 +0.1 607,247 - QEN71_RS42590 0.15 -0.4 607,327 + QEN71_RS42590 0.29 +0.1 607,327 + QEN71_RS42590 0.29 +0.1 607,445 - QEN71_RS42590 0.49 -1.5 607,445 - QEN71_RS42590 0.49 -0.2 607,506 + QEN71_RS42590 0.59 -0.8 607,507 - QEN71_RS42590 0.59 -0.9 607,507 - QEN71_RS42590 0.59 +0.3 607,543 + QEN71_RS42590 0.65 -0.6 607,543 + QEN71_RS42590 0.65 -0.5 607,552 + QEN71_RS42590 0.67 -0.7 607,696 - +0.5 607,766 - +0.9 607,991 + -1.7 607,991 + -0.4 607,992 - -0.9 608,073 + +0.3 608,073 + -0.9 608,101 - -0.7 608,105 + -0.1 608,105 + -0.1 608,105 + -0.2 608,106 - +0.5 608,106 - -0.6 608,106 - -0.7 608,106 - -0.7 608,307 + QEN71_RS42595 0.17 -0.7 608,308 - QEN71_RS42595 0.17 -0.2 608,328 + QEN71_RS42595 0.20 +0.8 608,420 + QEN71_RS42595 0.36 -0.8 608,420 + QEN71_RS42595 0.36 +1.0 608,421 - QEN71_RS42595 0.36 -0.6 608,435 - QEN71_RS42595 0.39 -1.2 608,435 - QEN71_RS42595 0.39 -0.2 608,447 + QEN71_RS42595 0.41 -2.3 608,447 + QEN71_RS42595 0.41 +0.3 608,447 + QEN71_RS42595 0.41 -0.3 608,448 - QEN71_RS42595 0.41 +0.4 608,830 + +0.1 608,830 + -0.4 609,159 - -0.2 609,232 + -0.8 609,236 + +0.5 609,236 + +0.5 609,237 - +0.1 609,237 - -1.0 609,237 - -0.6 609,289 - +0.2 609,355 - -0.0 609,367 + -1.2 609,368 - -1.3 609,390 - +1.1 609,480 + -2.7 609,481 - -0.6 609,604 - -0.3 609,670 - -0.7 609,758 + +0.3 609,759 - -0.3
Or see this region's nucleotide sequence