Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42530 and QEN71_RS42535 are separated by 71 nucleotides QEN71_RS42535 and QEN71_RS42540 are separated by 301 nucleotides QEN71_RS42540 and QEN71_RS42545 overlap by 4 nucleotides
QEN71_RS42530: QEN71_RS42530 - homoserine O-succinyltransferase, at 593,672 to 594,577
_RS42530
QEN71_RS42535: QEN71_RS42535 - glutamine synthetase family protein, at 594,649 to 596,007
_RS42535
QEN71_RS42540: QEN71_RS42540 - RES family NAD+ phosphorylase, at 596,309 to 596,830
_RS42540
QEN71_RS42545: QEN71_RS42545 - DUF2384 domain-containing protein, at 596,827 to 597,234
_RS42545
Position (kb) 594
595
596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 593.665 kb on + strand at 593.678 kb on - strand at 593.754 kb on + strand at 593.754 kb on + strand at 593.754 kb on + strand at 593.755 kb on - strand at 593.755 kb on - strand at 593.755 kb on - strand at 593.793 kb on + strand, within QEN71_RS42530 at 593.857 kb on + strand, within QEN71_RS42530 at 593.857 kb on + strand, within QEN71_RS42530 at 593.873 kb on - strand, within QEN71_RS42530 at 593.936 kb on + strand, within QEN71_RS42530 at 593.936 kb on + strand, within QEN71_RS42530 at 593.936 kb on + strand, within QEN71_RS42530 at 593.937 kb on - strand, within QEN71_RS42530 at 593.987 kb on - strand, within QEN71_RS42530 at 594.207 kb on - strand, within QEN71_RS42530 at 594.300 kb on + strand, within QEN71_RS42530 at 594.334 kb on - strand, within QEN71_RS42530 at 594.369 kb on - strand, within QEN71_RS42530 at 594.383 kb on + strand, within QEN71_RS42530 at 594.410 kb on + strand, within QEN71_RS42530 at 594.452 kb on - strand, within QEN71_RS42530 at 594.548 kb on + strand at 594.548 kb on + strand at 594.548 kb on + strand at 594.549 kb on - strand at 594.635 kb on + strand at 594.702 kb on + strand at 594.741 kb on + strand at 594.808 kb on + strand, within QEN71_RS42535 at 594.809 kb on - strand, within QEN71_RS42535 at 594.809 kb on - strand, within QEN71_RS42535 at 594.893 kb on + strand, within QEN71_RS42535 at 594.893 kb on + strand, within QEN71_RS42535 at 594.894 kb on - strand, within QEN71_RS42535 at 594.894 kb on - strand, within QEN71_RS42535 at 594.951 kb on - strand, within QEN71_RS42535 at 595.078 kb on + strand, within QEN71_RS42535 at 595.078 kb on + strand, within QEN71_RS42535 at 595.078 kb on + strand, within QEN71_RS42535 at 595.079 kb on - strand, within QEN71_RS42535 at 595.079 kb on - strand, within QEN71_RS42535 at 595.147 kb on + strand, within QEN71_RS42535 at 595.147 kb on + strand, within QEN71_RS42535 at 595.147 kb on + strand, within QEN71_RS42535 at 595.147 kb on + strand, within QEN71_RS42535 at 595.147 kb on + strand, within QEN71_RS42535 at 595.147 kb on + strand, within QEN71_RS42535 at 595.148 kb on - strand, within QEN71_RS42535 at 595.159 kb on + strand, within QEN71_RS42535 at 595.164 kb on + strand, within QEN71_RS42535 at 595.164 kb on + strand, within QEN71_RS42535 at 595.170 kb on - strand, within QEN71_RS42535 at 595.170 kb on - strand, within QEN71_RS42535 at 595.282 kb on - strand, within QEN71_RS42535 at 595.286 kb on + strand, within QEN71_RS42535 at 595.286 kb on + strand, within QEN71_RS42535 at 595.286 kb on + strand, within QEN71_RS42535 at 595.287 kb on - strand, within QEN71_RS42535 at 595.287 kb on - strand, within QEN71_RS42535 at 595.287 kb on - strand, within QEN71_RS42535 at 595.287 kb on - strand, within QEN71_RS42535 at 595.287 kb on - strand, within QEN71_RS42535 at 595.291 kb on + strand, within QEN71_RS42535 at 595.291 kb on + strand, within QEN71_RS42535 at 595.377 kb on + strand, within QEN71_RS42535 at 595.377 kb on + strand, within QEN71_RS42535 at 595.378 kb on - strand, within QEN71_RS42535 at 595.378 kb on - strand, within QEN71_RS42535 at 595.378 kb on - strand, within QEN71_RS42535 at 595.378 kb on - strand, within QEN71_RS42535 at 595.381 kb on + strand, within QEN71_RS42535 at 595.381 kb on + strand, within QEN71_RS42535 at 595.381 kb on + strand, within QEN71_RS42535 at 595.381 kb on + strand, within QEN71_RS42535 at 595.382 kb on - strand, within QEN71_RS42535 at 595.382 kb on - strand, within QEN71_RS42535 at 595.382 kb on - strand, within QEN71_RS42535 at 595.382 kb on - strand, within QEN71_RS42535 at 595.383 kb on + strand, within QEN71_RS42535 at 595.383 kb on + strand, within QEN71_RS42535 at 595.383 kb on + strand, within QEN71_RS42535 at 595.383 kb on + strand, within QEN71_RS42535 at 595.383 kb on + strand, within QEN71_RS42535 at 595.383 kb on + strand, within QEN71_RS42535 at 595.384 kb on - strand, within QEN71_RS42535 at 595.399 kb on + strand, within QEN71_RS42535 at 595.486 kb on + strand, within QEN71_RS42535 at 595.513 kb on + strand, within QEN71_RS42535 at 595.513 kb on + strand, within QEN71_RS42535 at 595.548 kb on + strand, within QEN71_RS42535 at 595.548 kb on + strand, within QEN71_RS42535 at 595.549 kb on - strand, within QEN71_RS42535 at 595.549 kb on - strand, within QEN71_RS42535 at 595.549 kb on - strand, within QEN71_RS42535 at 595.579 kb on + strand, within QEN71_RS42535 at 595.579 kb on + strand, within QEN71_RS42535 at 595.579 kb on + strand, within QEN71_RS42535 at 595.579 kb on + strand, within QEN71_RS42535 at 595.580 kb on - strand, within QEN71_RS42535 at 595.582 kb on - strand, within QEN71_RS42535 at 595.674 kb on + strand, within QEN71_RS42535 at 595.674 kb on + strand, within QEN71_RS42535 at 595.675 kb on - strand, within QEN71_RS42535 at 595.723 kb on + strand, within QEN71_RS42535 at 595.723 kb on + strand, within QEN71_RS42535 at 595.723 kb on + strand, within QEN71_RS42535 at 595.724 kb on - strand, within QEN71_RS42535 at 595.743 kb on + strand, within QEN71_RS42535 at 595.743 kb on + strand, within QEN71_RS42535 at 595.810 kb on + strand, within QEN71_RS42535 at 595.810 kb on + strand, within QEN71_RS42535 at 595.810 kb on + strand, within QEN71_RS42535 at 595.811 kb on - strand, within QEN71_RS42535 at 595.811 kb on - strand, within QEN71_RS42535 at 595.921 kb on + strand at 595.921 kb on + strand at 595.921 kb on + strand at 595.921 kb on + strand at 595.921 kb on + strand at 595.922 kb on - strand at 595.922 kb on - strand at 595.922 kb on - strand at 595.922 kb on - strand at 595.954 kb on + strand at 595.955 kb on - strand at 595.955 kb on - strand at 595.986 kb on + strand at 595.986 kb on + strand at 595.987 kb on - strand at 595.987 kb on - strand at 596.005 kb on + strand at 596.005 kb on + strand at 596.006 kb on - strand at 596.006 kb on - strand at 596.006 kb on - strand at 596.006 kb on - strand at 596.042 kb on + strand at 596.082 kb on + strand at 596.082 kb on + strand at 596.083 kb on - strand at 596.087 kb on + strand at 596.087 kb on + strand at 596.087 kb on + strand at 596.088 kb on - strand at 596.088 kb on - strand at 596.088 kb on - strand at 596.151 kb on + strand at 596.151 kb on + strand at 596.151 kb on + strand at 596.151 kb on + strand at 596.151 kb on + strand at 596.151 kb on + strand at 596.151 kb on + strand at 596.152 kb on - strand at 596.152 kb on - strand at 596.194 kb on + strand at 596.194 kb on + strand at 596.195 kb on - strand at 596.195 kb on - strand at 596.195 kb on - strand at 596.195 kb on - strand at 596.293 kb on - strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.310 kb on + strand at 596.311 kb on - strand at 596.311 kb on - strand at 596.311 kb on - strand at 596.311 kb on - strand at 596.311 kb on - strand at 596.311 kb on - strand at 596.311 kb on - strand at 596.311 kb on - strand at 596.311 kb on - strand at 596.311 kb on - strand at 596.311 kb on - strand at 596.355 kb on + strand at 596.356 kb on - strand at 596.356 kb on - strand at 596.356 kb on - strand at 596.356 kb on - strand at 596.356 kb on - strand at 596.356 kb on - strand at 596.356 kb on - strand at 596.363 kb on + strand, within QEN71_RS42540 at 596.364 kb on - strand, within QEN71_RS42540 at 596.364 kb on - strand, within QEN71_RS42540 at 596.364 kb on - strand, within QEN71_RS42540 at 596.364 kb on - strand, within QEN71_RS42540 at 596.364 kb on - strand, within QEN71_RS42540 at 596.364 kb on - strand, within QEN71_RS42540 at 596.364 kb on - strand, within QEN71_RS42540 at 596.364 kb on - strand, within QEN71_RS42540 at 596.364 kb on - strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.394 kb on + strand, within QEN71_RS42540 at 596.395 kb on - strand, within QEN71_RS42540 at 596.395 kb on - strand, within QEN71_RS42540 at 596.395 kb on - strand, within QEN71_RS42540 at 596.395 kb on - strand, within QEN71_RS42540 at 596.395 kb on - strand, within QEN71_RS42540 at 596.395 kb on - strand, within QEN71_RS42540 at 596.395 kb on - strand, within QEN71_RS42540 at 596.549 kb on + strand, within QEN71_RS42540 at 596.584 kb on + strand, within QEN71_RS42540 at 596.585 kb on - strand, within QEN71_RS42540 at 596.616 kb on + strand, within QEN71_RS42540 at 596.617 kb on - strand, within QEN71_RS42540 at 596.617 kb on - strand, within QEN71_RS42540 at 596.617 kb on - strand, within QEN71_RS42540 at 596.661 kb on + strand, within QEN71_RS42540 at 596.661 kb on + strand, within QEN71_RS42540 at 596.662 kb on - strand, within QEN71_RS42540 at 596.662 kb on - strand, within QEN71_RS42540 at 596.662 kb on - strand, within QEN71_RS42540 at 596.662 kb on - strand, within QEN71_RS42540 at 596.670 kb on - strand, within QEN71_RS42540 at 596.697 kb on + strand, within QEN71_RS42540 at 596.698 kb on - strand, within QEN71_RS42540 at 596.698 kb on - strand, within QEN71_RS42540 at 596.716 kb on + strand, within QEN71_RS42540 at 596.716 kb on + strand, within QEN71_RS42540 at 596.716 kb on + strand, within QEN71_RS42540 at 596.717 kb on - strand, within QEN71_RS42540 at 596.717 kb on - strand, within QEN71_RS42540
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 593,665 + +0.2 593,678 - -0.0 593,754 + -0.9 593,754 + +1.2 593,754 + +0.2 593,755 - +0.0 593,755 - -0.1 593,755 - -1.0 593,793 + QEN71_RS42530 0.13 +0.2 593,857 + QEN71_RS42530 0.20 +0.3 593,857 + QEN71_RS42530 0.20 -1.5 593,873 - QEN71_RS42530 0.22 -0.7 593,936 + QEN71_RS42530 0.29 -0.5 593,936 + QEN71_RS42530 0.29 -1.4 593,936 + QEN71_RS42530 0.29 -1.7 593,937 - QEN71_RS42530 0.29 +1.2 593,987 - QEN71_RS42530 0.35 -0.3 594,207 - QEN71_RS42530 0.59 +0.2 594,300 + QEN71_RS42530 0.69 +0.9 594,334 - QEN71_RS42530 0.73 -1.0 594,369 - QEN71_RS42530 0.77 -1.0 594,383 + QEN71_RS42530 0.78 -0.4 594,410 + QEN71_RS42530 0.81 -0.1 594,452 - QEN71_RS42530 0.86 -0.7 594,548 + -1.0 594,548 + +0.3 594,548 + -0.1 594,549 - -1.0 594,635 + -0.4 594,702 + -0.8 594,741 + -0.4 594,808 + QEN71_RS42535 0.12 -1.3 594,809 - QEN71_RS42535 0.12 +0.5 594,809 - QEN71_RS42535 0.12 -0.6 594,893 + QEN71_RS42535 0.18 +0.4 594,893 + QEN71_RS42535 0.18 -0.7 594,894 - QEN71_RS42535 0.18 -0.0 594,894 - QEN71_RS42535 0.18 -0.4 594,951 - QEN71_RS42535 0.22 +0.3 595,078 + QEN71_RS42535 0.32 -0.5 595,078 + QEN71_RS42535 0.32 +0.1 595,078 + QEN71_RS42535 0.32 +1.0 595,079 - QEN71_RS42535 0.32 -0.1 595,079 - QEN71_RS42535 0.32 -0.8 595,147 + QEN71_RS42535 0.37 -0.2 595,147 + QEN71_RS42535 0.37 -1.0 595,147 + QEN71_RS42535 0.37 -0.7 595,147 + QEN71_RS42535 0.37 -0.7 595,147 + QEN71_RS42535 0.37 -0.4 595,147 + QEN71_RS42535 0.37 +1.2 595,148 - QEN71_RS42535 0.37 +0.2 595,159 + QEN71_RS42535 0.38 +0.3 595,164 + QEN71_RS42535 0.38 -0.4 595,164 + QEN71_RS42535 0.38 -0.3 595,170 - QEN71_RS42535 0.38 +0.6 595,170 - QEN71_RS42535 0.38 +0.3 595,282 - QEN71_RS42535 0.47 -0.8 595,286 + QEN71_RS42535 0.47 +0.4 595,286 + QEN71_RS42535 0.47 +0.8 595,286 + QEN71_RS42535 0.47 +0.4 595,287 - QEN71_RS42535 0.47 -1.7 595,287 - QEN71_RS42535 0.47 -0.1 595,287 - QEN71_RS42535 0.47 -0.1 595,287 - QEN71_RS42535 0.47 +0.1 595,287 - QEN71_RS42535 0.47 -0.1 595,291 + QEN71_RS42535 0.47 +1.0 595,291 + QEN71_RS42535 0.47 +2.4 595,377 + QEN71_RS42535 0.54 +0.7 595,377 + QEN71_RS42535 0.54 +0.2 595,378 - QEN71_RS42535 0.54 -0.9 595,378 - QEN71_RS42535 0.54 +0.1 595,378 - QEN71_RS42535 0.54 +0.1 595,378 - QEN71_RS42535 0.54 -0.3 595,381 + QEN71_RS42535 0.54 -1.7 595,381 + QEN71_RS42535 0.54 -1.5 595,381 + QEN71_RS42535 0.54 -0.1 595,381 + QEN71_RS42535 0.54 -1.3 595,382 - QEN71_RS42535 0.54 +0.9 595,382 - QEN71_RS42535 0.54 +0.7 595,382 - QEN71_RS42535 0.54 +0.3 595,382 - QEN71_RS42535 0.54 -0.1 595,383 + QEN71_RS42535 0.54 +1.5 595,383 + QEN71_RS42535 0.54 +0.7 595,383 + QEN71_RS42535 0.54 +0.6 595,383 + QEN71_RS42535 0.54 +0.1 595,383 + QEN71_RS42535 0.54 +1.2 595,383 + QEN71_RS42535 0.54 -0.4 595,384 - QEN71_RS42535 0.54 +0.6 595,399 + QEN71_RS42535 0.55 +0.8 595,486 + QEN71_RS42535 0.62 +0.4 595,513 + QEN71_RS42535 0.64 -0.4 595,513 + QEN71_RS42535 0.64 +1.5 595,548 + QEN71_RS42535 0.66 +1.5 595,548 + QEN71_RS42535 0.66 -0.8 595,549 - QEN71_RS42535 0.66 -0.4 595,549 - QEN71_RS42535 0.66 -0.7 595,549 - QEN71_RS42535 0.66 -0.3 595,579 + QEN71_RS42535 0.68 -0.3 595,579 + QEN71_RS42535 0.68 -0.2 595,579 + QEN71_RS42535 0.68 -0.8 595,579 + QEN71_RS42535 0.68 +0.5 595,580 - QEN71_RS42535 0.69 -1.8 595,582 - QEN71_RS42535 0.69 -0.2 595,674 + QEN71_RS42535 0.75 +0.3 595,674 + QEN71_RS42535 0.75 -0.2 595,675 - QEN71_RS42535 0.75 -0.5 595,723 + QEN71_RS42535 0.79 -0.3 595,723 + QEN71_RS42535 0.79 +1.1 595,723 + QEN71_RS42535 0.79 -0.2 595,724 - QEN71_RS42535 0.79 +2.1 595,743 + QEN71_RS42535 0.81 -0.3 595,743 + QEN71_RS42535 0.81 +0.4 595,810 + QEN71_RS42535 0.85 +1.1 595,810 + QEN71_RS42535 0.85 +0.7 595,810 + QEN71_RS42535 0.85 +1.8 595,811 - QEN71_RS42535 0.86 +0.3 595,811 - QEN71_RS42535 0.86 -0.3 595,921 + -0.6 595,921 + -0.4 595,921 + +0.0 595,921 + +0.7 595,921 + -0.9 595,922 - -0.8 595,922 - +0.3 595,922 - +0.0 595,922 - +0.8 595,954 + +0.8 595,955 - +0.6 595,955 - +0.2 595,986 + -0.9 595,986 + -0.0 595,987 - -0.2 595,987 - +0.0 596,005 + +0.2 596,005 + +0.3 596,006 - +1.1 596,006 - +0.8 596,006 - -0.1 596,006 - -0.9 596,042 + -0.2 596,082 + -0.4 596,082 + -0.6 596,083 - +0.4 596,087 + +0.9 596,087 + -0.2 596,087 + +0.5 596,088 - -0.8 596,088 - +0.3 596,088 - -0.5 596,151 + +0.0 596,151 + -3.0 596,151 + -0.1 596,151 + -1.3 596,151 + -0.1 596,151 + +1.2 596,151 + -0.4 596,152 - -0.0 596,152 - -0.9 596,194 + +1.9 596,194 + +0.2 596,195 - -0.4 596,195 - +1.5 596,195 - +0.0 596,195 - +1.1 596,293 - -0.7 596,310 + +0.5 596,310 + -0.7 596,310 + +2.7 596,310 + -0.9 596,310 + +1.0 596,310 + +0.1 596,310 + -1.5 596,310 + +0.2 596,310 + -0.2 596,310 + -0.8 596,310 + +0.3 596,310 + -0.7 596,311 - -0.9 596,311 - +0.3 596,311 - +0.6 596,311 - -0.1 596,311 - -0.4 596,311 - -0.0 596,311 - +0.3 596,311 - -0.2 596,311 - -0.5 596,311 - -0.3 596,311 - +0.1 596,355 + -0.2 596,356 - -0.5 596,356 - +0.6 596,356 - -0.5 596,356 - -2.3 596,356 - +0.3 596,356 - -1.0 596,356 - +1.2 596,363 + QEN71_RS42540 0.10 +0.3 596,364 - QEN71_RS42540 0.11 -0.0 596,364 - QEN71_RS42540 0.11 -3.3 596,364 - QEN71_RS42540 0.11 -1.8 596,364 - QEN71_RS42540 0.11 +0.1 596,364 - QEN71_RS42540 0.11 -0.6 596,364 - QEN71_RS42540 0.11 +1.2 596,364 - QEN71_RS42540 0.11 -1.7 596,364 - QEN71_RS42540 0.11 -0.8 596,364 - QEN71_RS42540 0.11 -0.1 596,394 + QEN71_RS42540 0.16 +0.7 596,394 + QEN71_RS42540 0.16 -0.8 596,394 + QEN71_RS42540 0.16 +1.3 596,394 + QEN71_RS42540 0.16 +0.2 596,394 + QEN71_RS42540 0.16 +0.1 596,394 + QEN71_RS42540 0.16 -0.3 596,394 + QEN71_RS42540 0.16 -0.9 596,394 + QEN71_RS42540 0.16 -0.0 596,394 + QEN71_RS42540 0.16 -0.1 596,394 + QEN71_RS42540 0.16 +0.5 596,394 + QEN71_RS42540 0.16 +0.1 596,395 - QEN71_RS42540 0.16 -0.0 596,395 - QEN71_RS42540 0.16 -1.2 596,395 - QEN71_RS42540 0.16 -0.4 596,395 - QEN71_RS42540 0.16 +0.3 596,395 - QEN71_RS42540 0.16 -0.2 596,395 - QEN71_RS42540 0.16 -0.9 596,395 - QEN71_RS42540 0.16 -0.0 596,549 + QEN71_RS42540 0.46 +0.9 596,584 + QEN71_RS42540 0.53 -1.3 596,585 - QEN71_RS42540 0.53 +1.1 596,616 + QEN71_RS42540 0.59 -0.2 596,617 - QEN71_RS42540 0.59 +1.1 596,617 - QEN71_RS42540 0.59 +0.0 596,617 - QEN71_RS42540 0.59 -0.1 596,661 + QEN71_RS42540 0.67 +0.6 596,661 + QEN71_RS42540 0.67 +0.5 596,662 - QEN71_RS42540 0.68 +0.1 596,662 - QEN71_RS42540 0.68 +0.1 596,662 - QEN71_RS42540 0.68 -0.7 596,662 - QEN71_RS42540 0.68 -1.6 596,670 - QEN71_RS42540 0.69 +0.3 596,697 + QEN71_RS42540 0.74 +0.7 596,698 - QEN71_RS42540 0.75 -0.2 596,698 - QEN71_RS42540 0.75 -0.5 596,716 + QEN71_RS42540 0.78 -0.4 596,716 + QEN71_RS42540 0.78 -0.7 596,716 + QEN71_RS42540 0.78 -1.4 596,717 - QEN71_RS42540 0.78 -0.2 596,717 - QEN71_RS42540 0.78 -0.1
Or see this region's nucleotide sequence