Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS40740 and QEN71_RS40745 overlap by 1 nucleotides QEN71_RS40745 and QEN71_RS40750 are separated by 58 nucleotides QEN71_RS40750 and QEN71_RS40755 overlap by 4 nucleotides
QEN71_RS40740: QEN71_RS40740 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 208,442 to 209,602
_RS40740
QEN71_RS40745: QEN71_RS40745 - polysaccharide biosynthesis tyrosine autokinase, at 209,602 to 211,857
_RS40745
QEN71_RS40750: QEN71_RS40750 - low molecular weight phosphotyrosine protein phosphatase, at 211,916 to 212,368
_RS40750
QEN71_RS40755: QEN71_RS40755 - polysaccharide biosynthesis/export family protein, at 212,365 to 213,399
_RS40755
Position (kb) 209
210
211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.629 kb on - strand, within QEN71_RS40740 at 208.756 kb on + strand, within QEN71_RS40740 at 208.804 kb on + strand, within QEN71_RS40740 at 208.804 kb on + strand, within QEN71_RS40740 at 208.805 kb on - strand, within QEN71_RS40740 at 208.866 kb on + strand, within QEN71_RS40740 at 209.080 kb on + strand, within QEN71_RS40740 at 209.094 kb on + strand, within QEN71_RS40740 at 209.094 kb on + strand, within QEN71_RS40740 at 209.094 kb on + strand, within QEN71_RS40740 at 209.094 kb on + strand, within QEN71_RS40740 at 209.095 kb on - strand, within QEN71_RS40740 at 209.096 kb on + strand, within QEN71_RS40740 at 209.097 kb on - strand, within QEN71_RS40740 at 209.171 kb on + strand, within QEN71_RS40740 at 209.172 kb on - strand, within QEN71_RS40740 at 209.269 kb on + strand, within QEN71_RS40740 at 209.271 kb on + strand, within QEN71_RS40740 at 209.271 kb on + strand, within QEN71_RS40740 at 209.272 kb on - strand, within QEN71_RS40740 at 209.274 kb on + strand, within QEN71_RS40740 at 209.274 kb on + strand, within QEN71_RS40740 at 209.275 kb on - strand, within QEN71_RS40740 at 209.355 kb on + strand, within QEN71_RS40740 at 209.356 kb on - strand, within QEN71_RS40740 at 209.417 kb on - strand, within QEN71_RS40740 at 209.576 kb on + strand at 209.576 kb on + strand at 209.681 kb on + strand at 209.688 kb on - strand at 209.721 kb on + strand at 209.869 kb on + strand, within QEN71_RS40745 at 209.870 kb on - strand, within QEN71_RS40745 at 209.900 kb on + strand, within QEN71_RS40745 at 209.900 kb on + strand, within QEN71_RS40745 at 209.901 kb on - strand, within QEN71_RS40745 at 209.916 kb on + strand, within QEN71_RS40745 at 209.916 kb on + strand, within QEN71_RS40745 at 209.916 kb on + strand, within QEN71_RS40745 at 209.916 kb on + strand, within QEN71_RS40745 at 209.993 kb on - strand, within QEN71_RS40745 at 210.164 kb on - strand, within QEN71_RS40745 at 210.264 kb on + strand, within QEN71_RS40745 at 210.265 kb on - strand, within QEN71_RS40745 at 210.360 kb on + strand, within QEN71_RS40745 at 210.628 kb on + strand, within QEN71_RS40745 at 210.628 kb on + strand, within QEN71_RS40745 at 210.629 kb on - strand, within QEN71_RS40745 at 210.641 kb on + strand, within QEN71_RS40745 at 210.642 kb on - strand, within QEN71_RS40745 at 210.642 kb on - strand, within QEN71_RS40745 at 210.861 kb on - strand, within QEN71_RS40745 at 210.898 kb on + strand, within QEN71_RS40745 at 210.898 kb on + strand, within QEN71_RS40745 at 210.899 kb on - strand, within QEN71_RS40745 at 210.920 kb on + strand, within QEN71_RS40745 at 210.961 kb on + strand, within QEN71_RS40745 at 210.961 kb on + strand, within QEN71_RS40745 at 210.961 kb on + strand, within QEN71_RS40745 at 210.962 kb on - strand, within QEN71_RS40745 at 210.962 kb on - strand, within QEN71_RS40745 at 211.064 kb on - strand, within QEN71_RS40745 at 211.195 kb on + strand, within QEN71_RS40745 at 211.196 kb on - strand, within QEN71_RS40745 at 211.264 kb on - strand, within QEN71_RS40745 at 211.361 kb on + strand, within QEN71_RS40745 at 211.361 kb on + strand, within QEN71_RS40745 at 211.362 kb on - strand, within QEN71_RS40745 at 211.362 kb on - strand, within QEN71_RS40745 at 211.362 kb on - strand, within QEN71_RS40745 at 211.362 kb on - strand, within QEN71_RS40745 at 211.365 kb on + strand, within QEN71_RS40745 at 211.365 kb on + strand, within QEN71_RS40745 at 211.366 kb on - strand, within QEN71_RS40745 at 211.366 kb on - strand, within QEN71_RS40745 at 211.430 kb on + strand, within QEN71_RS40745 at 211.431 kb on - strand, within QEN71_RS40745 at 211.579 kb on + strand, within QEN71_RS40745 at 211.579 kb on + strand, within QEN71_RS40745 at 211.579 kb on + strand, within QEN71_RS40745 at 211.580 kb on - strand, within QEN71_RS40745 at 211.580 kb on - strand, within QEN71_RS40745 at 211.609 kb on + strand, within QEN71_RS40745 at 211.650 kb on + strand at 211.792 kb on + strand at 211.792 kb on + strand at 211.792 kb on + strand at 211.839 kb on + strand at 211.846 kb on - strand at 211.902 kb on + strand at 211.903 kb on - strand at 211.907 kb on - strand at 211.907 kb on - strand at 211.980 kb on - strand, within QEN71_RS40750 at 212.004 kb on + strand, within QEN71_RS40750 at 212.005 kb on - strand, within QEN71_RS40750 at 212.151 kb on - strand, within QEN71_RS40750 at 212.345 kb on + strand at 212.345 kb on + strand at 212.345 kb on + strand at 212.345 kb on + strand at 212.346 kb on - strand at 212.346 kb on - strand at 212.346 kb on - strand at 212.346 kb on - strand at 212.431 kb on - strand at 212.463 kb on - strand at 212.576 kb on + strand, within QEN71_RS40755 at 212.576 kb on + strand, within QEN71_RS40755 at 212.576 kb on + strand, within QEN71_RS40755 at 212.576 kb on + strand, within QEN71_RS40755 at 212.576 kb on + strand, within QEN71_RS40755 at 212.576 kb on + strand, within QEN71_RS40755 at 212.576 kb on + strand, within QEN71_RS40755 at 212.577 kb on - strand, within QEN71_RS40755 at 212.577 kb on - strand, within QEN71_RS40755 at 212.578 kb on + strand, within QEN71_RS40755 at 212.578 kb on + strand, within QEN71_RS40755 at 212.578 kb on + strand, within QEN71_RS40755 at 212.578 kb on + strand, within QEN71_RS40755 at 212.578 kb on + strand, within QEN71_RS40755 at 212.579 kb on - strand, within QEN71_RS40755 at 212.579 kb on - strand, within QEN71_RS40755 at 212.579 kb on - strand, within QEN71_RS40755 at 212.579 kb on - strand, within QEN71_RS40755 at 212.579 kb on - strand, within QEN71_RS40755 at 212.699 kb on - strand, within QEN71_RS40755 at 212.702 kb on + strand, within QEN71_RS40755 at 212.810 kb on + strand, within QEN71_RS40755 at 212.811 kb on - strand, within QEN71_RS40755
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 208,629 - QEN71_RS40740 0.16 +0.7 208,756 + QEN71_RS40740 0.27 -0.1 208,804 + QEN71_RS40740 0.31 -2.4 208,804 + QEN71_RS40740 0.31 -1.0 208,805 - QEN71_RS40740 0.31 -1.1 208,866 + QEN71_RS40740 0.37 -1.3 209,080 + QEN71_RS40740 0.55 -1.2 209,094 + QEN71_RS40740 0.56 -1.1 209,094 + QEN71_RS40740 0.56 +0.1 209,094 + QEN71_RS40740 0.56 -0.6 209,094 + QEN71_RS40740 0.56 +2.2 209,095 - QEN71_RS40740 0.56 -0.9 209,096 + QEN71_RS40740 0.56 +0.6 209,097 - QEN71_RS40740 0.56 -1.3 209,171 + QEN71_RS40740 0.63 +0.4 209,172 - QEN71_RS40740 0.63 -1.8 209,269 + QEN71_RS40740 0.71 -0.1 209,271 + QEN71_RS40740 0.71 -0.3 209,271 + QEN71_RS40740 0.71 -2.1 209,272 - QEN71_RS40740 0.71 -1.1 209,274 + QEN71_RS40740 0.72 -0.1 209,274 + QEN71_RS40740 0.72 +1.1 209,275 - QEN71_RS40740 0.72 -0.8 209,355 + QEN71_RS40740 0.79 -1.3 209,356 - QEN71_RS40740 0.79 -0.3 209,417 - QEN71_RS40740 0.84 -0.7 209,576 + -0.0 209,576 + -0.6 209,681 + -2.2 209,688 - -0.6 209,721 + -0.3 209,869 + QEN71_RS40745 0.12 +1.5 209,870 - QEN71_RS40745 0.12 +1.2 209,900 + QEN71_RS40745 0.13 +0.4 209,900 + QEN71_RS40745 0.13 +0.5 209,901 - QEN71_RS40745 0.13 +0.0 209,916 + QEN71_RS40745 0.14 +0.9 209,916 + QEN71_RS40745 0.14 +0.1 209,916 + QEN71_RS40745 0.14 -0.6 209,916 + QEN71_RS40745 0.14 -0.6 209,993 - QEN71_RS40745 0.17 -0.4 210,164 - QEN71_RS40745 0.25 -0.0 210,264 + QEN71_RS40745 0.29 +0.7 210,265 - QEN71_RS40745 0.29 -0.4 210,360 + QEN71_RS40745 0.34 -1.8 210,628 + QEN71_RS40745 0.45 -0.3 210,628 + QEN71_RS40745 0.45 -0.6 210,629 - QEN71_RS40745 0.46 -0.9 210,641 + QEN71_RS40745 0.46 -0.4 210,642 - QEN71_RS40745 0.46 -0.2 210,642 - QEN71_RS40745 0.46 -0.7 210,861 - QEN71_RS40745 0.56 -0.2 210,898 + QEN71_RS40745 0.57 -0.9 210,898 + QEN71_RS40745 0.57 +0.1 210,899 - QEN71_RS40745 0.57 -0.9 210,920 + QEN71_RS40745 0.58 -0.1 210,961 + QEN71_RS40745 0.60 -1.2 210,961 + QEN71_RS40745 0.60 +0.1 210,961 + QEN71_RS40745 0.60 +1.4 210,962 - QEN71_RS40745 0.60 +0.8 210,962 - QEN71_RS40745 0.60 +0.3 211,064 - QEN71_RS40745 0.65 -0.6 211,195 + QEN71_RS40745 0.71 -0.9 211,196 - QEN71_RS40745 0.71 -0.0 211,264 - QEN71_RS40745 0.74 -1.4 211,361 + QEN71_RS40745 0.78 -0.7 211,361 + QEN71_RS40745 0.78 +0.6 211,362 - QEN71_RS40745 0.78 -0.1 211,362 - QEN71_RS40745 0.78 -1.8 211,362 - QEN71_RS40745 0.78 +0.2 211,362 - QEN71_RS40745 0.78 +1.2 211,365 + QEN71_RS40745 0.78 -0.4 211,365 + QEN71_RS40745 0.78 -2.4 211,366 - QEN71_RS40745 0.78 +0.3 211,366 - QEN71_RS40745 0.78 +0.4 211,430 + QEN71_RS40745 0.81 +0.2 211,431 - QEN71_RS40745 0.81 +0.1 211,579 + QEN71_RS40745 0.88 -1.0 211,579 + QEN71_RS40745 0.88 +0.2 211,579 + QEN71_RS40745 0.88 -0.1 211,580 - QEN71_RS40745 0.88 +0.4 211,580 - QEN71_RS40745 0.88 +0.2 211,609 + QEN71_RS40745 0.89 +0.1 211,650 + +0.0 211,792 + +0.0 211,792 + -2.0 211,792 + -0.4 211,839 + -0.1 211,846 - -0.7 211,902 + -2.0 211,903 - -0.7 211,907 - +0.3 211,907 - -0.7 211,980 - QEN71_RS40750 0.14 -0.6 212,004 + QEN71_RS40750 0.19 -1.1 212,005 - QEN71_RS40750 0.20 +0.4 212,151 - QEN71_RS40750 0.52 -0.2 212,345 + +1.6 212,345 + +0.1 212,345 + -1.3 212,345 + -1.0 212,346 - +0.5 212,346 - -2.8 212,346 - -1.4 212,346 - -0.2 212,431 - +1.3 212,463 - -1.6 212,576 + QEN71_RS40755 0.20 -1.6 212,576 + QEN71_RS40755 0.20 -1.2 212,576 + QEN71_RS40755 0.20 +1.4 212,576 + QEN71_RS40755 0.20 -0.7 212,576 + QEN71_RS40755 0.20 -0.1 212,576 + QEN71_RS40755 0.20 -0.2 212,576 + QEN71_RS40755 0.20 -0.2 212,577 - QEN71_RS40755 0.20 +0.3 212,577 - QEN71_RS40755 0.20 -1.2 212,578 + QEN71_RS40755 0.21 +1.4 212,578 + QEN71_RS40755 0.21 -0.7 212,578 + QEN71_RS40755 0.21 -0.6 212,578 + QEN71_RS40755 0.21 -1.8 212,578 + QEN71_RS40755 0.21 -0.4 212,579 - QEN71_RS40755 0.21 -0.9 212,579 - QEN71_RS40755 0.21 -0.5 212,579 - QEN71_RS40755 0.21 -0.9 212,579 - QEN71_RS40755 0.21 -0.1 212,579 - QEN71_RS40755 0.21 +1.0 212,699 - QEN71_RS40755 0.32 -1.7 212,702 + QEN71_RS40755 0.33 -1.3 212,810 + QEN71_RS40755 0.43 -0.1 212,811 - QEN71_RS40755 0.43 -0.9
Or see this region's nucleotide sequence