Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39830 and QEN71_RS39835 are separated by 619 nucleotides QEN71_RS39835 and QEN71_RS39840 are separated by 1 nucleotides QEN71_RS39840 and QEN71_RS39845 are separated by 63 nucleotides
QEN71_RS39830: QEN71_RS39830 - EamA family transporter, at 12,162 to 13,070
_RS39830
QEN71_RS39835: QEN71_RS39835 - IS5/IS1182 family transposase, at 13,690 to 13,870
_RS39835
QEN71_RS39840: QEN71_RS39840 - IS66 family insertion sequence element accessory protein TnpB, at 13,872 to 14,060
_RS39840
QEN71_RS39845: QEN71_RS39845 - IS66 family transposase, at 14,124 to 15,446
_RS39845
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.797 kb on + strand, within QEN71_RS39830 at 12.822 kb on + strand, within QEN71_RS39830 at 12.822 kb on + strand, within QEN71_RS39830 at 12.823 kb on - strand, within QEN71_RS39830 at 12.852 kb on + strand, within QEN71_RS39830 at 12.853 kb on - strand, within QEN71_RS39830 at 12.853 kb on - strand, within QEN71_RS39830 at 12.856 kb on + strand, within QEN71_RS39830 at 12.856 kb on + strand, within QEN71_RS39830 at 12.857 kb on - strand, within QEN71_RS39830 at 12.857 kb on - strand, within QEN71_RS39830 at 12.860 kb on + strand, within QEN71_RS39830 at 12.860 kb on + strand, within QEN71_RS39830 at 12.860 kb on + strand, within QEN71_RS39830 at 12.860 kb on + strand, within QEN71_RS39830 at 12.860 kb on + strand, within QEN71_RS39830 at 12.860 kb on + strand, within QEN71_RS39830 at 12.861 kb on - strand, within QEN71_RS39830 at 12.861 kb on - strand, within QEN71_RS39830 at 12.865 kb on + strand, within QEN71_RS39830 at 12.865 kb on + strand, within QEN71_RS39830 at 12.866 kb on - strand, within QEN71_RS39830 at 12.866 kb on - strand, within QEN71_RS39830 at 12.866 kb on - strand, within QEN71_RS39830 at 12.866 kb on - strand, within QEN71_RS39830 at 12.952 kb on + strand, within QEN71_RS39830 at 12.952 kb on + strand, within QEN71_RS39830 at 12.953 kb on - strand, within QEN71_RS39830 at 12.953 kb on - strand, within QEN71_RS39830 at 12.953 kb on - strand, within QEN71_RS39830 at 12.967 kb on + strand, within QEN71_RS39830 at 12.967 kb on + strand, within QEN71_RS39830 at 12.971 kb on + strand, within QEN71_RS39830 at 12.971 kb on + strand, within QEN71_RS39830 at 12.971 kb on + strand, within QEN71_RS39830 at 12.971 kb on + strand, within QEN71_RS39830 at 12.971 kb on + strand, within QEN71_RS39830 at 12.972 kb on - strand, within QEN71_RS39830 at 12.972 kb on - strand, within QEN71_RS39830 at 12.972 kb on - strand, within QEN71_RS39830 at 12.972 kb on - strand, within QEN71_RS39830 at 12.972 kb on - strand, within QEN71_RS39830 at 13.013 kb on + strand at 13.013 kb on + strand at 13.013 kb on + strand at 13.013 kb on + strand at 13.014 kb on - strand at 13.014 kb on - strand at 13.014 kb on - strand at 13.109 kb on + strand at 13.109 kb on + strand at 13.109 kb on + strand at 13.310 kb on + strand at 13.311 kb on - strand at 13.311 kb on - strand at 13.311 kb on - strand at 13.325 kb on + strand at 13.342 kb on - strand at 13.344 kb on - strand at 13.348 kb on + strand at 13.349 kb on - strand at 13.349 kb on - strand at 13.361 kb on - strand at 13.361 kb on - strand at 13.370 kb on + strand at 13.395 kb on + strand at 13.406 kb on - strand at 13.421 kb on - strand at 13.421 kb on - strand at 13.427 kb on + strand at 13.428 kb on - strand at 13.437 kb on + strand at 13.437 kb on + strand at 13.438 kb on - strand at 13.442 kb on + strand at 13.442 kb on + strand at 13.442 kb on + strand at 13.442 kb on + strand at 13.448 kb on + strand at 13.475 kb on + strand at 13.476 kb on - strand at 13.499 kb on + strand at 13.499 kb on + strand at 13.499 kb on + strand at 13.499 kb on + strand at 13.499 kb on + strand at 13.499 kb on + strand at 13.500 kb on - strand at 13.500 kb on - strand at 13.500 kb on - strand at 13.500 kb on - strand at 13.586 kb on + strand at 13.586 kb on + strand at 13.586 kb on + strand at 13.587 kb on - strand at 13.720 kb on + strand, within QEN71_RS39835 at 13.772 kb on + strand, within QEN71_RS39835 at 13.773 kb on - strand, within QEN71_RS39835 at 13.773 kb on - strand, within QEN71_RS39835 at 13.773 kb on - strand, within QEN71_RS39835
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 12,797 + QEN71_RS39830 0.70 +0.7 12,822 + QEN71_RS39830 0.73 -0.2 12,822 + QEN71_RS39830 0.73 +1.4 12,823 - QEN71_RS39830 0.73 -0.7 12,852 + QEN71_RS39830 0.76 +0.9 12,853 - QEN71_RS39830 0.76 -0.4 12,853 - QEN71_RS39830 0.76 +1.2 12,856 + QEN71_RS39830 0.76 +0.6 12,856 + QEN71_RS39830 0.76 -0.7 12,857 - QEN71_RS39830 0.76 -0.2 12,857 - QEN71_RS39830 0.76 -0.7 12,860 + QEN71_RS39830 0.77 -0.7 12,860 + QEN71_RS39830 0.77 -0.4 12,860 + QEN71_RS39830 0.77 -0.4 12,860 + QEN71_RS39830 0.77 -0.5 12,860 + QEN71_RS39830 0.77 +0.3 12,860 + QEN71_RS39830 0.77 -0.2 12,861 - QEN71_RS39830 0.77 -0.7 12,861 - QEN71_RS39830 0.77 -1.2 12,865 + QEN71_RS39830 0.77 -1.2 12,865 + QEN71_RS39830 0.77 -1.9 12,866 - QEN71_RS39830 0.77 +0.1 12,866 - QEN71_RS39830 0.77 +0.1 12,866 - QEN71_RS39830 0.77 -0.2 12,866 - QEN71_RS39830 0.77 +0.1 12,952 + QEN71_RS39830 0.87 -1.3 12,952 + QEN71_RS39830 0.87 -0.3 12,953 - QEN71_RS39830 0.87 +0.3 12,953 - QEN71_RS39830 0.87 -1.3 12,953 - QEN71_RS39830 0.87 +0.5 12,967 + QEN71_RS39830 0.89 +0.6 12,967 + QEN71_RS39830 0.89 +0.1 12,971 + QEN71_RS39830 0.89 -0.2 12,971 + QEN71_RS39830 0.89 -0.5 12,971 + QEN71_RS39830 0.89 -0.2 12,971 + QEN71_RS39830 0.89 +1.1 12,971 + QEN71_RS39830 0.89 -0.8 12,972 - QEN71_RS39830 0.89 +0.5 12,972 - QEN71_RS39830 0.89 +0.2 12,972 - QEN71_RS39830 0.89 +0.6 12,972 - QEN71_RS39830 0.89 -0.3 12,972 - QEN71_RS39830 0.89 +0.4 13,013 + -0.5 13,013 + -1.1 13,013 + +1.0 13,013 + -0.7 13,014 - -0.2 13,014 - +0.8 13,014 - -0.8 13,109 + -1.3 13,109 + -0.2 13,109 + +0.4 13,310 + -0.5 13,311 - -0.3 13,311 - +0.4 13,311 - +0.9 13,325 + +0.7 13,342 - +0.6 13,344 - -0.2 13,348 + -0.3 13,349 - -0.1 13,349 - -0.5 13,361 - +0.2 13,361 - -0.0 13,370 + -0.1 13,395 + +0.3 13,406 - -0.9 13,421 - +0.5 13,421 - -0.1 13,427 + -1.7 13,428 - -0.4 13,437 + +1.3 13,437 + +0.7 13,438 - +0.4 13,442 + -1.1 13,442 + +0.1 13,442 + -0.4 13,442 + +0.9 13,448 + -0.3 13,475 + +0.2 13,476 - +0.3 13,499 + -0.1 13,499 + -0.4 13,499 + -0.1 13,499 + -0.1 13,499 + -2.0 13,499 + +0.1 13,500 - -0.4 13,500 - +0.9 13,500 - -0.5 13,500 - +0.8 13,586 + -0.3 13,586 + -0.6 13,586 + +1.7 13,587 - +1.9 13,720 + QEN71_RS39835 0.17 -0.3 13,772 + QEN71_RS39835 0.45 -2.1 13,773 - QEN71_RS39835 0.46 +0.1 13,773 - QEN71_RS39835 0.46 -0.5 13,773 - QEN71_RS39835 0.46 -0.7
Or see this region's nucleotide sequence