Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39610 and QEN71_RS39615 are separated by 206 nucleotides QEN71_RS39615 and QEN71_RS39620 overlap by 8 nucleotides QEN71_RS39620 and QEN71_RS39625 are separated by 59 nucleotides
QEN71_RS39610: QEN71_RS39610 - glycine betaine ABC transporter substrate-binding protein, at 2,275,232 to 2,276,236
_RS39610
QEN71_RS39615: QEN71_RS39615 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 2,276,443 to 2,277,570
_RS39615
QEN71_RS39620: QEN71_RS39620 - proline/glycine betaine ABC transporter permease, at 2,277,563 to 2,278,450
_RS39620
QEN71_RS39625: QEN71_RS39625 - FAD-binding oxidoreductase, at 2,278,510 to 2,279,781
_RS39625
Position (kb)
2276
2277
2278 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2275.635 kb on + strand, within QEN71_RS39610 at 2275.636 kb on - strand, within QEN71_RS39610 at 2275.636 kb on - strand, within QEN71_RS39610 at 2275.723 kb on - strand, within QEN71_RS39610 at 2275.723 kb on - strand, within QEN71_RS39610 at 2275.770 kb on + strand, within QEN71_RS39610 at 2276.444 kb on + strand at 2276.566 kb on + strand, within QEN71_RS39615 at 2276.781 kb on - strand, within QEN71_RS39615 at 2276.985 kb on - strand, within QEN71_RS39615 at 2277.172 kb on + strand, within QEN71_RS39615 at 2277.226 kb on + strand, within QEN71_RS39615 at 2277.497 kb on + strand at 2277.497 kb on + strand at 2277.498 kb on - strand at 2277.498 kb on - strand at 2277.936 kb on + strand, within QEN71_RS39620 at 2278.353 kb on + strand, within QEN71_RS39620 at 2278.400 kb on - strand at 2278.400 kb on - strand at 2278.439 kb on + strand at 2278.561 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 2,275,635 + QEN71_RS39610 0.40 -1.9 2,275,636 - QEN71_RS39610 0.40 +0.2 2,275,636 - QEN71_RS39610 0.40 +0.3 2,275,723 - QEN71_RS39610 0.49 +1.9 2,275,723 - QEN71_RS39610 0.49 +0.2 2,275,770 + QEN71_RS39610 0.54 +0.9 2,276,444 + -0.6 2,276,566 + QEN71_RS39615 0.11 +0.1 2,276,781 - QEN71_RS39615 0.30 -0.5 2,276,985 - QEN71_RS39615 0.48 +0.3 2,277,172 + QEN71_RS39615 0.65 +1.1 2,277,226 + QEN71_RS39615 0.69 -1.3 2,277,497 + -1.1 2,277,497 + -0.7 2,277,498 - -0.5 2,277,498 - +0.1 2,277,936 + QEN71_RS39620 0.42 +1.2 2,278,353 + QEN71_RS39620 0.89 +0.3 2,278,400 - +0.5 2,278,400 - +0.6 2,278,439 + +1.5 2,278,561 + -1.3
Or see this region's nucleotide sequence