Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS25470 and QEN71_RS25475 are separated by 254 nucleotides QEN71_RS25475 and QEN71_RS25480 are separated by 15 nucleotides QEN71_RS25480 and QEN71_RS25485 are separated by 32 nucleotides QEN71_RS25485 and QEN71_RS25490 are separated by 733 nucleotides
QEN71_RS25470: QEN71_RS25470 - hypothetical protein, at 5,668,137 to 5,668,592
_RS25470
QEN71_RS25475: QEN71_RS25475 - hypothetical protein, at 5,668,847 to 5,669,332
_RS25475
QEN71_RS25480: QEN71_RS25480 - hypothetical protein, at 5,669,348 to 5,669,608
_RS25480
QEN71_RS25485: QEN71_RS25485 - ATP-binding protein, at 5,669,641 to 5,669,835
_RS25485
QEN71_RS25490: QEN71_RS25490 - Imm72 family immunity protein, at 5,670,569 to 5,670,934
_RS25490
Position (kb) 5669
5670 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.403 kb on + strand, within QEN71_RS25470 at 5668.404 kb on - strand, within QEN71_RS25470 at 5668.482 kb on - strand, within QEN71_RS25470 at 5668.482 kb on - strand, within QEN71_RS25470 at 5668.519 kb on + strand, within QEN71_RS25470 at 5668.519 kb on + strand, within QEN71_RS25470 at 5668.520 kb on - strand, within QEN71_RS25470 at 5668.520 kb on - strand, within QEN71_RS25470 at 5668.520 kb on - strand, within QEN71_RS25470 at 5668.552 kb on - strand at 5668.552 kb on - strand at 5668.614 kb on + strand at 5668.615 kb on - strand at 5668.615 kb on - strand at 5668.659 kb on + strand at 5668.659 kb on + strand at 5668.660 kb on - strand at 5668.661 kb on + strand at 5668.661 kb on + strand at 5668.661 kb on + strand at 5668.662 kb on - strand at 5668.662 kb on - strand at 5668.706 kb on + strand at 5668.706 kb on + strand at 5668.803 kb on + strand at 5668.804 kb on - strand at 5668.804 kb on - strand at 5668.805 kb on + strand at 5668.805 kb on + strand at 5668.806 kb on - strand at 5668.806 kb on - strand at 5668.806 kb on - strand at 5668.812 kb on + strand at 5668.812 kb on + strand at 5668.812 kb on + strand at 5668.812 kb on + strand at 5668.813 kb on - strand at 5668.848 kb on + strand at 5668.849 kb on - strand at 5668.849 kb on - strand at 5668.849 kb on - strand at 5668.942 kb on + strand, within QEN71_RS25475 at 5668.943 kb on - strand, within QEN71_RS25475 at 5668.943 kb on - strand, within QEN71_RS25475 at 5668.943 kb on - strand, within QEN71_RS25475 at 5669.029 kb on + strand, within QEN71_RS25475 at 5669.104 kb on + strand, within QEN71_RS25475 at 5669.142 kb on - strand, within QEN71_RS25475 at 5669.142 kb on - strand, within QEN71_RS25475 at 5669.201 kb on + strand, within QEN71_RS25475 at 5669.201 kb on + strand, within QEN71_RS25475 at 5669.202 kb on - strand, within QEN71_RS25475 at 5669.225 kb on + strand, within QEN71_RS25475 at 5669.317 kb on + strand at 5669.317 kb on + strand at 5669.317 kb on + strand at 5669.318 kb on - strand at 5669.324 kb on + strand at 5669.324 kb on + strand at 5669.324 kb on + strand at 5669.325 kb on - strand at 5669.325 kb on - strand at 5669.325 kb on - strand at 5669.349 kb on + strand at 5669.349 kb on + strand at 5669.349 kb on + strand at 5669.349 kb on + strand at 5669.349 kb on + strand at 5669.350 kb on - strand at 5669.357 kb on - strand at 5669.417 kb on + strand, within QEN71_RS25480 at 5669.468 kb on + strand, within QEN71_RS25480 at 5669.554 kb on + strand, within QEN71_RS25480 at 5669.554 kb on + strand, within QEN71_RS25480 at 5669.555 kb on - strand, within QEN71_RS25480 at 5669.565 kb on - strand, within QEN71_RS25480 at 5669.585 kb on + strand at 5669.585 kb on + strand at 5669.585 kb on + strand at 5669.585 kb on + strand at 5669.586 kb on - strand at 5669.700 kb on + strand, within QEN71_RS25485 at 5669.839 kb on - strand at 5669.839 kb on - strand at 5669.839 kb on - strand at 5669.892 kb on - strand at 5669.969 kb on + strand at 5669.969 kb on + strand at 5669.969 kb on + strand at 5669.969 kb on + strand at 5669.970 kb on - strand at 5669.970 kb on - strand at 5670.032 kb on + strand at 5670.032 kb on + strand at 5670.033 kb on - strand at 5670.121 kb on + strand at 5670.138 kb on + strand at 5670.138 kb on + strand at 5670.138 kb on + strand at 5670.139 kb on - strand at 5670.139 kb on - strand at 5670.141 kb on + strand at 5670.141 kb on + strand at 5670.141 kb on + strand at 5670.141 kb on + strand at 5670.142 kb on - strand at 5670.142 kb on - strand at 5670.142 kb on - strand at 5670.142 kb on - strand at 5670.142 kb on - strand at 5670.268 kb on + strand at 5670.317 kb on - strand at 5670.323 kb on + strand at 5670.323 kb on + strand at 5670.324 kb on - strand at 5670.324 kb on - strand at 5670.324 kb on - strand at 5670.410 kb on + strand at 5670.443 kb on + strand at 5670.443 kb on + strand at 5670.443 kb on + strand at 5670.570 kb on + strand at 5670.570 kb on + strand at 5670.570 kb on + strand at 5670.570 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 5,668,348 + QEN71_RS25470 0.46 +0.8 5,668,348 + QEN71_RS25470 0.46 +0.4 5,668,348 + QEN71_RS25470 0.46 -1.0 5,668,348 + QEN71_RS25470 0.46 +1.0 5,668,348 + QEN71_RS25470 0.46 +0.8 5,668,348 + QEN71_RS25470 0.46 -0.3 5,668,348 + QEN71_RS25470 0.46 -1.6 5,668,349 - QEN71_RS25470 0.46 -0.2 5,668,349 - QEN71_RS25470 0.46 +0.0 5,668,349 - QEN71_RS25470 0.46 -0.4 5,668,349 - QEN71_RS25470 0.46 -1.7 5,668,349 - QEN71_RS25470 0.46 +0.7 5,668,349 - QEN71_RS25470 0.46 -0.8 5,668,403 + QEN71_RS25470 0.58 +0.2 5,668,404 - QEN71_RS25470 0.59 +0.6 5,668,482 - QEN71_RS25470 0.76 +0.0 5,668,482 - QEN71_RS25470 0.76 +0.9 5,668,519 + QEN71_RS25470 0.84 +0.0 5,668,519 + QEN71_RS25470 0.84 +0.8 5,668,520 - QEN71_RS25470 0.84 -0.0 5,668,520 - QEN71_RS25470 0.84 +1.3 5,668,520 - QEN71_RS25470 0.84 +0.0 5,668,552 - +1.9 5,668,552 - -1.2 5,668,614 + -0.6 5,668,615 - +0.0 5,668,615 - +0.2 5,668,659 + +1.0 5,668,659 + -0.8 5,668,660 - -0.3 5,668,661 + +0.0 5,668,661 + -1.6 5,668,661 + -1.3 5,668,662 - -0.2 5,668,662 - +0.4 5,668,706 + -1.8 5,668,706 + +0.2 5,668,803 + +0.4 5,668,804 - +0.0 5,668,804 - +0.0 5,668,805 + +0.1 5,668,805 + -0.6 5,668,806 - +0.4 5,668,806 - +1.9 5,668,806 - -0.0 5,668,812 + +0.0 5,668,812 + -1.6 5,668,812 + -0.3 5,668,812 + -0.1 5,668,813 - +0.1 5,668,848 + +1.5 5,668,849 - +0.3 5,668,849 - -0.5 5,668,849 - -0.1 5,668,942 + QEN71_RS25475 0.20 -0.2 5,668,943 - QEN71_RS25475 0.20 +0.0 5,668,943 - QEN71_RS25475 0.20 -0.1 5,668,943 - QEN71_RS25475 0.20 +0.7 5,669,029 + QEN71_RS25475 0.37 -0.7 5,669,104 + QEN71_RS25475 0.53 -0.4 5,669,142 - QEN71_RS25475 0.61 -1.0 5,669,142 - QEN71_RS25475 0.61 +0.4 5,669,201 + QEN71_RS25475 0.73 +0.0 5,669,201 + QEN71_RS25475 0.73 +0.2 5,669,202 - QEN71_RS25475 0.73 +0.3 5,669,225 + QEN71_RS25475 0.78 +0.3 5,669,317 + -0.6 5,669,317 + -1.5 5,669,317 + +0.3 5,669,318 - -1.5 5,669,324 + -1.3 5,669,324 + +0.2 5,669,324 + +0.3 5,669,325 - +0.0 5,669,325 - -1.0 5,669,325 - -1.6 5,669,349 + -1.0 5,669,349 + -0.1 5,669,349 + -0.9 5,669,349 + +0.3 5,669,349 + -0.3 5,669,350 - -0.2 5,669,357 - -0.2 5,669,417 + QEN71_RS25480 0.26 -0.9 5,669,468 + QEN71_RS25480 0.46 +0.1 5,669,554 + QEN71_RS25480 0.79 -0.4 5,669,554 + QEN71_RS25480 0.79 +0.4 5,669,555 - QEN71_RS25480 0.79 +0.3 5,669,565 - QEN71_RS25480 0.83 +0.7 5,669,585 + -0.2 5,669,585 + -1.6 5,669,585 + +0.1 5,669,585 + +0.4 5,669,586 - -0.4 5,669,700 + QEN71_RS25485 0.30 -1.7 5,669,839 - -0.4 5,669,839 - -0.2 5,669,839 - -2.3 5,669,892 - -0.9 5,669,969 + -1.2 5,669,969 + +0.4 5,669,969 + -0.7 5,669,969 + +0.0 5,669,970 - -0.3 5,669,970 - +0.7 5,670,032 + -1.6 5,670,032 + -0.2 5,670,033 - +0.1 5,670,121 + -0.3 5,670,138 + -0.6 5,670,138 + -1.2 5,670,138 + +0.1 5,670,139 - +0.2 5,670,139 - +1.0 5,670,141 + +0.0 5,670,141 + -1.5 5,670,141 + -0.8 5,670,141 + -0.6 5,670,142 - -0.8 5,670,142 - +0.4 5,670,142 - +0.6 5,670,142 - +0.4 5,670,142 - +0.2 5,670,268 + +0.1 5,670,317 - -1.0 5,670,323 + +0.9 5,670,323 + +1.5 5,670,324 - +0.0 5,670,324 - +0.7 5,670,324 - +0.9 5,670,410 + -0.6 5,670,443 + +1.2 5,670,443 + -0.6 5,670,443 + +0.9 5,670,570 + +0.4 5,670,570 + +1.2 5,670,570 + -0.2 5,670,570 + -0.8
Or see this region's nucleotide sequence