Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS25465 and QEN71_RS25470 are separated by 177 nucleotides QEN71_RS25470 and QEN71_RS25475 are separated by 254 nucleotides QEN71_RS25475 and QEN71_RS25480 are separated by 15 nucleotides
QEN71_RS25465: QEN71_RS25465 - tetratricopeptide repeat protein, at 5,666,151 to 5,667,959
_RS25465
QEN71_RS25470: QEN71_RS25470 - hypothetical protein, at 5,668,137 to 5,668,592
_RS25470
QEN71_RS25475: QEN71_RS25475 - hypothetical protein, at 5,668,847 to 5,669,332
_RS25475
QEN71_RS25480: QEN71_RS25480 - hypothetical protein, at 5,669,348 to 5,669,608
_RS25480
Position (kb) 5668
5669 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5667.159 kb on - strand, within QEN71_RS25465 at 5667.159 kb on - strand, within QEN71_RS25465 at 5667.369 kb on + strand, within QEN71_RS25465 at 5667.427 kb on + strand, within QEN71_RS25465 at 5667.427 kb on + strand, within QEN71_RS25465 at 5667.446 kb on - strand, within QEN71_RS25465 at 5667.446 kb on - strand, within QEN71_RS25465 at 5667.466 kb on + strand, within QEN71_RS25465 at 5667.466 kb on + strand, within QEN71_RS25465 at 5667.467 kb on - strand, within QEN71_RS25465 at 5667.467 kb on - strand, within QEN71_RS25465 at 5667.467 kb on - strand, within QEN71_RS25465 at 5667.467 kb on - strand, within QEN71_RS25465 at 5667.544 kb on + strand, within QEN71_RS25465 at 5667.545 kb on - strand, within QEN71_RS25465 at 5667.545 kb on - strand, within QEN71_RS25465 at 5667.551 kb on + strand, within QEN71_RS25465 at 5667.552 kb on - strand, within QEN71_RS25465 at 5667.552 kb on - strand, within QEN71_RS25465 at 5667.552 kb on - strand, within QEN71_RS25465 at 5667.552 kb on - strand, within QEN71_RS25465 at 5667.552 kb on - strand, within QEN71_RS25465 at 5667.638 kb on + strand, within QEN71_RS25465 at 5667.638 kb on + strand, within QEN71_RS25465 at 5667.647 kb on + strand, within QEN71_RS25465 at 5667.717 kb on - strand, within QEN71_RS25465 at 5667.726 kb on + strand, within QEN71_RS25465 at 5667.770 kb on - strand, within QEN71_RS25465 at 5667.831 kb on - strand at 5667.849 kb on - strand at 5667.906 kb on + strand at 5667.906 kb on + strand at 5667.907 kb on - strand at 5667.924 kb on + strand at 5667.924 kb on + strand at 5667.925 kb on - strand at 5667.941 kb on + strand at 5667.941 kb on + strand at 5667.942 kb on - strand at 5667.942 kb on - strand at 5667.945 kb on + strand at 5667.946 kb on - strand at 5667.946 kb on - strand at 5667.987 kb on + strand at 5668.023 kb on + strand at 5668.028 kb on + strand at 5668.126 kb on - strand at 5668.127 kb on + strand at 5668.127 kb on + strand at 5668.128 kb on - strand at 5668.168 kb on + strand at 5668.168 kb on + strand at 5668.169 kb on - strand at 5668.198 kb on + strand, within QEN71_RS25470 at 5668.198 kb on + strand, within QEN71_RS25470 at 5668.199 kb on - strand, within QEN71_RS25470 at 5668.199 kb on - strand, within QEN71_RS25470 at 5668.225 kb on - strand, within QEN71_RS25470 at 5668.304 kb on - strand, within QEN71_RS25470 at 5668.318 kb on + strand, within QEN71_RS25470 at 5668.319 kb on - strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.348 kb on + strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.349 kb on - strand, within QEN71_RS25470 at 5668.403 kb on + strand, within QEN71_RS25470 at 5668.404 kb on - strand, within QEN71_RS25470 at 5668.482 kb on - strand, within QEN71_RS25470 at 5668.482 kb on - strand, within QEN71_RS25470 at 5668.519 kb on + strand, within QEN71_RS25470 at 5668.519 kb on + strand, within QEN71_RS25470 at 5668.520 kb on - strand, within QEN71_RS25470 at 5668.520 kb on - strand, within QEN71_RS25470 at 5668.520 kb on - strand, within QEN71_RS25470 at 5668.552 kb on - strand at 5668.552 kb on - strand at 5668.614 kb on + strand at 5668.615 kb on - strand at 5668.615 kb on - strand at 5668.659 kb on + strand at 5668.659 kb on + strand at 5668.660 kb on - strand at 5668.661 kb on + strand at 5668.661 kb on + strand at 5668.661 kb on + strand at 5668.662 kb on - strand at 5668.662 kb on - strand at 5668.706 kb on + strand at 5668.706 kb on + strand at 5668.803 kb on + strand at 5668.804 kb on - strand at 5668.804 kb on - strand at 5668.805 kb on + strand at 5668.805 kb on + strand at 5668.806 kb on - strand at 5668.806 kb on - strand at 5668.806 kb on - strand at 5668.812 kb on + strand at 5668.812 kb on + strand at 5668.812 kb on + strand at 5668.812 kb on + strand at 5668.813 kb on - strand at 5668.848 kb on + strand at 5668.849 kb on - strand at 5668.849 kb on - strand at 5668.849 kb on - strand at 5668.942 kb on + strand, within QEN71_RS25475 at 5668.943 kb on - strand, within QEN71_RS25475 at 5668.943 kb on - strand, within QEN71_RS25475 at 5668.943 kb on - strand, within QEN71_RS25475 at 5669.029 kb on + strand, within QEN71_RS25475 at 5669.104 kb on + strand, within QEN71_RS25475 at 5669.142 kb on - strand, within QEN71_RS25475 at 5669.142 kb on - strand, within QEN71_RS25475 at 5669.201 kb on + strand, within QEN71_RS25475 at 5669.201 kb on + strand, within QEN71_RS25475 at 5669.202 kb on - strand, within QEN71_RS25475 at 5669.225 kb on + strand, within QEN71_RS25475 at 5669.317 kb on + strand at 5669.317 kb on + strand at 5669.317 kb on + strand at 5669.318 kb on - strand at 5669.324 kb on + strand at 5669.324 kb on + strand at 5669.324 kb on + strand at 5669.325 kb on - strand at 5669.325 kb on - strand at 5669.325 kb on - strand at 5669.349 kb on + strand at 5669.349 kb on + strand at 5669.349 kb on + strand at 5669.349 kb on + strand at 5669.349 kb on + strand at 5669.350 kb on - strand at 5669.357 kb on - strand at 5669.417 kb on + strand, within QEN71_RS25480 at 5669.468 kb on + strand, within QEN71_RS25480 at 5669.554 kb on + strand, within QEN71_RS25480 at 5669.554 kb on + strand, within QEN71_RS25480 at 5669.555 kb on - strand, within QEN71_RS25480 at 5669.565 kb on - strand, within QEN71_RS25480 at 5669.585 kb on + strand at 5669.585 kb on + strand at 5669.585 kb on + strand at 5669.585 kb on + strand at 5669.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 5,667,159 - QEN71_RS25465 0.56 +0.3 5,667,159 - QEN71_RS25465 0.56 -0.0 5,667,369 + QEN71_RS25465 0.67 +0.3 5,667,427 + QEN71_RS25465 0.71 +1.7 5,667,427 + QEN71_RS25465 0.71 +0.7 5,667,446 - QEN71_RS25465 0.72 -2.1 5,667,446 - QEN71_RS25465 0.72 -0.8 5,667,466 + QEN71_RS25465 0.73 -0.6 5,667,466 + QEN71_RS25465 0.73 +1.2 5,667,467 - QEN71_RS25465 0.73 -0.3 5,667,467 - QEN71_RS25465 0.73 -0.6 5,667,467 - QEN71_RS25465 0.73 -1.0 5,667,467 - QEN71_RS25465 0.73 +0.0 5,667,544 + QEN71_RS25465 0.77 +0.7 5,667,545 - QEN71_RS25465 0.77 -1.0 5,667,545 - QEN71_RS25465 0.77 +0.9 5,667,551 + QEN71_RS25465 0.77 +1.2 5,667,552 - QEN71_RS25465 0.77 +0.6 5,667,552 - QEN71_RS25465 0.77 +0.0 5,667,552 - QEN71_RS25465 0.77 +0.7 5,667,552 - QEN71_RS25465 0.77 +0.3 5,667,552 - QEN71_RS25465 0.77 +0.1 5,667,638 + QEN71_RS25465 0.82 -0.7 5,667,638 + QEN71_RS25465 0.82 +0.2 5,667,647 + QEN71_RS25465 0.83 +0.1 5,667,717 - QEN71_RS25465 0.87 +1.1 5,667,726 + QEN71_RS25465 0.87 +0.7 5,667,770 - QEN71_RS25465 0.89 +0.3 5,667,831 - -1.7 5,667,849 - +1.2 5,667,906 + -0.8 5,667,906 + -0.7 5,667,907 - +0.0 5,667,924 + +0.3 5,667,924 + +1.0 5,667,925 - +0.1 5,667,941 + +0.6 5,667,941 + -2.3 5,667,942 - -1.2 5,667,942 - +0.3 5,667,945 + -1.1 5,667,946 - -1.3 5,667,946 - +0.3 5,667,987 + +0.8 5,668,023 + +0.7 5,668,028 + +1.2 5,668,126 - +2.6 5,668,127 + -0.6 5,668,127 + +0.6 5,668,128 - -0.2 5,668,168 + +0.7 5,668,168 + +0.7 5,668,169 - +0.0 5,668,198 + QEN71_RS25470 0.13 +0.8 5,668,198 + QEN71_RS25470 0.13 +0.4 5,668,199 - QEN71_RS25470 0.14 -0.6 5,668,199 - QEN71_RS25470 0.14 -0.1 5,668,225 - QEN71_RS25470 0.19 +0.4 5,668,304 - QEN71_RS25470 0.37 +1.2 5,668,318 + QEN71_RS25470 0.40 +0.7 5,668,319 - QEN71_RS25470 0.40 -1.0 5,668,348 + QEN71_RS25470 0.46 +0.8 5,668,348 + QEN71_RS25470 0.46 +0.4 5,668,348 + QEN71_RS25470 0.46 -1.0 5,668,348 + QEN71_RS25470 0.46 +1.0 5,668,348 + QEN71_RS25470 0.46 +0.8 5,668,348 + QEN71_RS25470 0.46 -0.3 5,668,348 + QEN71_RS25470 0.46 -1.6 5,668,349 - QEN71_RS25470 0.46 -0.2 5,668,349 - QEN71_RS25470 0.46 +0.0 5,668,349 - QEN71_RS25470 0.46 -0.4 5,668,349 - QEN71_RS25470 0.46 -1.7 5,668,349 - QEN71_RS25470 0.46 +0.7 5,668,349 - QEN71_RS25470 0.46 -0.8 5,668,403 + QEN71_RS25470 0.58 +0.2 5,668,404 - QEN71_RS25470 0.59 +0.6 5,668,482 - QEN71_RS25470 0.76 +0.0 5,668,482 - QEN71_RS25470 0.76 +0.9 5,668,519 + QEN71_RS25470 0.84 +0.0 5,668,519 + QEN71_RS25470 0.84 +0.8 5,668,520 - QEN71_RS25470 0.84 -0.0 5,668,520 - QEN71_RS25470 0.84 +1.3 5,668,520 - QEN71_RS25470 0.84 +0.0 5,668,552 - +1.9 5,668,552 - -1.2 5,668,614 + -0.6 5,668,615 - +0.0 5,668,615 - +0.2 5,668,659 + +1.0 5,668,659 + -0.8 5,668,660 - -0.3 5,668,661 + +0.0 5,668,661 + -1.6 5,668,661 + -1.3 5,668,662 - -0.2 5,668,662 - +0.4 5,668,706 + -1.8 5,668,706 + +0.2 5,668,803 + +0.4 5,668,804 - +0.0 5,668,804 - +0.0 5,668,805 + +0.1 5,668,805 + -0.6 5,668,806 - +0.4 5,668,806 - +1.9 5,668,806 - -0.0 5,668,812 + +0.0 5,668,812 + -1.6 5,668,812 + -0.3 5,668,812 + -0.1 5,668,813 - +0.1 5,668,848 + +1.5 5,668,849 - +0.3 5,668,849 - -0.5 5,668,849 - -0.1 5,668,942 + QEN71_RS25475 0.20 -0.2 5,668,943 - QEN71_RS25475 0.20 +0.0 5,668,943 - QEN71_RS25475 0.20 -0.1 5,668,943 - QEN71_RS25475 0.20 +0.7 5,669,029 + QEN71_RS25475 0.37 -0.7 5,669,104 + QEN71_RS25475 0.53 -0.4 5,669,142 - QEN71_RS25475 0.61 -1.0 5,669,142 - QEN71_RS25475 0.61 +0.4 5,669,201 + QEN71_RS25475 0.73 +0.0 5,669,201 + QEN71_RS25475 0.73 +0.2 5,669,202 - QEN71_RS25475 0.73 +0.3 5,669,225 + QEN71_RS25475 0.78 +0.3 5,669,317 + -0.6 5,669,317 + -1.5 5,669,317 + +0.3 5,669,318 - -1.5 5,669,324 + -1.3 5,669,324 + +0.2 5,669,324 + +0.3 5,669,325 - +0.0 5,669,325 - -1.0 5,669,325 - -1.6 5,669,349 + -1.0 5,669,349 + -0.1 5,669,349 + -0.9 5,669,349 + +0.3 5,669,349 + -0.3 5,669,350 - -0.2 5,669,357 - -0.2 5,669,417 + QEN71_RS25480 0.26 -0.9 5,669,468 + QEN71_RS25480 0.46 +0.1 5,669,554 + QEN71_RS25480 0.79 -0.4 5,669,554 + QEN71_RS25480 0.79 +0.4 5,669,555 - QEN71_RS25480 0.79 +0.3 5,669,565 - QEN71_RS25480 0.83 +0.7 5,669,585 + -0.2 5,669,585 + -1.6 5,669,585 + +0.1 5,669,585 + +0.4 5,669,586 - -0.4
Or see this region's nucleotide sequence