Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS20550 and QEN71_RS20555 overlap by 16 nucleotides QEN71_RS20555 and QEN71_RS20560 overlap by 4 nucleotides QEN71_RS20560 and QEN71_RS20565 are separated by 242 nucleotides QEN71_RS20565 and QEN71_RS20570 are separated by 41 nucleotides
QEN71_RS20550: QEN71_RS20550 - peptidoglycan DD-metalloendopeptidase family protein, at 4,561,964 to 4,562,707
_RS20550
QEN71_RS20555: QEN71_RS20555 - hypothetical protein, at 4,562,692 to 4,562,946
_RS20555
QEN71_RS20560: QEN71_RS20560 - hypothetical protein, at 4,562,943 to 4,563,221
_RS20560
QEN71_RS20565: QEN71_RS20565 - divalent metal cation transporter, at 4,563,464 to 4,565,107
_RS20565
QEN71_RS20570: QEN71_RS20570 - hypothetical protein, at 4,565,149 to 4,565,313
_RS20570
Position (kb) 4563
4564
4565
4566 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4562.923 kb on - strand at 4563.022 kb on + strand, within QEN71_RS20560 at 4563.022 kb on + strand, within QEN71_RS20560 at 4563.022 kb on + strand, within QEN71_RS20560 at 4563.022 kb on + strand, within QEN71_RS20560 at 4563.022 kb on + strand, within QEN71_RS20560 at 4563.022 kb on + strand, within QEN71_RS20560 at 4563.023 kb on - strand, within QEN71_RS20560 at 4563.023 kb on - strand, within QEN71_RS20560 at 4563.023 kb on - strand, within QEN71_RS20560 at 4563.023 kb on - strand, within QEN71_RS20560 at 4563.023 kb on - strand, within QEN71_RS20560 at 4563.023 kb on - strand, within QEN71_RS20560 at 4563.171 kb on + strand, within QEN71_RS20560 at 4563.171 kb on + strand, within QEN71_RS20560 at 4563.172 kb on - strand, within QEN71_RS20560 at 4563.172 kb on - strand, within QEN71_RS20560 at 4563.184 kb on - strand, within QEN71_RS20560 at 4563.184 kb on - strand, within QEN71_RS20560 at 4563.184 kb on - strand, within QEN71_RS20560 at 4563.281 kb on + strand at 4563.281 kb on + strand at 4563.343 kb on - strand at 4563.343 kb on - strand at 4563.393 kb on - strand at 4563.522 kb on + strand at 4563.523 kb on - strand at 4563.760 kb on - strand, within QEN71_RS20565 at 4563.760 kb on - strand, within QEN71_RS20565 at 4564.008 kb on + strand, within QEN71_RS20565 at 4564.008 kb on + strand, within QEN71_RS20565 at 4564.008 kb on + strand, within QEN71_RS20565 at 4564.008 kb on + strand, within QEN71_RS20565 at 4564.008 kb on + strand, within QEN71_RS20565 at 4564.008 kb on + strand, within QEN71_RS20565 at 4564.008 kb on + strand, within QEN71_RS20565 at 4564.008 kb on + strand, within QEN71_RS20565 at 4564.009 kb on - strand, within QEN71_RS20565 at 4564.009 kb on - strand, within QEN71_RS20565 at 4564.009 kb on - strand, within QEN71_RS20565 at 4564.009 kb on - strand, within QEN71_RS20565 at 4564.009 kb on - strand, within QEN71_RS20565 at 4564.009 kb on - strand, within QEN71_RS20565 at 4564.017 kb on + strand, within QEN71_RS20565 at 4564.018 kb on - strand, within QEN71_RS20565 at 4564.086 kb on + strand, within QEN71_RS20565 at 4564.086 kb on + strand, within QEN71_RS20565 at 4564.087 kb on - strand, within QEN71_RS20565 at 4564.176 kb on + strand, within QEN71_RS20565 at 4564.196 kb on + strand, within QEN71_RS20565 at 4564.297 kb on + strand, within QEN71_RS20565 at 4564.297 kb on + strand, within QEN71_RS20565 at 4564.323 kb on + strand, within QEN71_RS20565 at 4564.324 kb on - strand, within QEN71_RS20565 at 4564.324 kb on - strand, within QEN71_RS20565 at 4564.324 kb on - strand, within QEN71_RS20565 at 4564.324 kb on - strand, within QEN71_RS20565 at 4564.358 kb on + strand, within QEN71_RS20565 at 4564.359 kb on - strand, within QEN71_RS20565 at 4564.359 kb on - strand, within QEN71_RS20565 at 4564.362 kb on + strand, within QEN71_RS20565 at 4564.362 kb on + strand, within QEN71_RS20565 at 4564.362 kb on + strand, within QEN71_RS20565 at 4564.362 kb on + strand, within QEN71_RS20565 at 4564.362 kb on + strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.363 kb on - strand, within QEN71_RS20565 at 4564.669 kb on + strand, within QEN71_RS20565 at 4564.669 kb on + strand, within QEN71_RS20565 at 4564.669 kb on + strand, within QEN71_RS20565 at 4564.670 kb on - strand, within QEN71_RS20565 at 4564.670 kb on - strand, within QEN71_RS20565 at 4564.670 kb on - strand, within QEN71_RS20565 at 4564.670 kb on - strand, within QEN71_RS20565 at 4564.670 kb on - strand, within QEN71_RS20565 at 4564.670 kb on - strand, within QEN71_RS20565 at 4564.709 kb on + strand, within QEN71_RS20565 at 4564.709 kb on + strand, within QEN71_RS20565 at 4564.709 kb on + strand, within QEN71_RS20565 at 4564.709 kb on + strand, within QEN71_RS20565 at 4564.710 kb on - strand, within QEN71_RS20565 at 4564.710 kb on - strand, within QEN71_RS20565 at 4564.710 kb on - strand, within QEN71_RS20565 at 4564.827 kb on + strand, within QEN71_RS20565 at 4564.828 kb on - strand, within QEN71_RS20565 at 4564.875 kb on + strand, within QEN71_RS20565 at 4564.875 kb on + strand, within QEN71_RS20565 at 4564.876 kb on - strand, within QEN71_RS20565 at 4564.876 kb on - strand, within QEN71_RS20565 at 4564.894 kb on + strand, within QEN71_RS20565 at 4564.894 kb on + strand, within QEN71_RS20565 at 4564.895 kb on - strand, within QEN71_RS20565 at 4564.895 kb on - strand, within QEN71_RS20565 at 4564.895 kb on - strand, within QEN71_RS20565 at 4564.895 kb on - strand, within QEN71_RS20565 at 4564.896 kb on + strand, within QEN71_RS20565 at 4564.896 kb on + strand, within QEN71_RS20565 at 4564.896 kb on + strand, within QEN71_RS20565 at 4564.896 kb on + strand, within QEN71_RS20565 at 4564.896 kb on + strand, within QEN71_RS20565 at 4564.896 kb on + strand, within QEN71_RS20565 at 4564.897 kb on - strand, within QEN71_RS20565 at 4564.897 kb on - strand, within QEN71_RS20565 at 4564.897 kb on - strand, within QEN71_RS20565 at 4564.897 kb on - strand, within QEN71_RS20565 at 4564.897 kb on - strand, within QEN71_RS20565 at 4565.151 kb on - strand at 4565.192 kb on + strand, within QEN71_RS20570 at 4565.192 kb on + strand, within QEN71_RS20570 at 4565.193 kb on - strand, within QEN71_RS20570 at 4565.193 kb on - strand, within QEN71_RS20570 at 4565.193 kb on - strand, within QEN71_RS20570 at 4565.193 kb on - strand, within QEN71_RS20570 at 4565.193 kb on - strand, within QEN71_RS20570 at 4565.218 kb on + strand, within QEN71_RS20570 at 4565.219 kb on - strand, within QEN71_RS20570 at 4565.219 kb on - strand, within QEN71_RS20570 at 4565.219 kb on - strand, within QEN71_RS20570 at 4565.258 kb on + strand, within QEN71_RS20570 at 4565.258 kb on + strand, within QEN71_RS20570 at 4565.258 kb on + strand, within QEN71_RS20570 at 4565.259 kb on - strand, within QEN71_RS20570 at 4565.259 kb on - strand, within QEN71_RS20570 at 4565.410 kb on + strand at 4565.469 kb on - strand at 4565.475 kb on + strand at 4565.475 kb on + strand at 4565.476 kb on - strand at 4565.497 kb on + strand at 4565.497 kb on + strand at 4565.497 kb on + strand at 4565.497 kb on + strand at 4565.497 kb on + strand at 4565.498 kb on - strand at 4565.604 kb on + strand at 4565.604 kb on + strand at 4565.604 kb on + strand at 4565.604 kb on + strand at 4565.605 kb on - strand at 4565.605 kb on - strand at 4565.605 kb on - strand at 4565.605 kb on - strand at 4565.617 kb on - strand at 4565.652 kb on + strand at 4565.652 kb on + strand at 4565.652 kb on + strand at 4565.652 kb on + strand at 4565.652 kb on + strand at 4565.652 kb on + strand at 4565.653 kb on - strand at 4565.687 kb on + strand at 4565.732 kb on - strand at 4565.773 kb on + strand at 4565.773 kb on + strand at 4565.774 kb on - strand at 4565.774 kb on - strand at 4565.850 kb on + strand at 4565.851 kb on - strand at 4565.851 kb on - strand at 4565.853 kb on + strand at 4565.854 kb on - strand at 4565.854 kb on - strand at 4565.854 kb on - strand at 4565.854 kb on - strand at 4565.893 kb on + strand at 4565.893 kb on + strand at 4565.940 kb on + strand at 4565.941 kb on - strand at 4565.941 kb on - strand at 4565.955 kb on + strand at 4565.955 kb on + strand at 4565.955 kb on + strand at 4565.955 kb on + strand at 4565.956 kb on - strand at 4566.015 kb on + strand at 4566.015 kb on + strand at 4566.028 kb on + strand at 4566.029 kb on - strand at 4566.029 kb on - strand at 4566.069 kb on + strand at 4566.069 kb on + strand at 4566.069 kb on + strand at 4566.069 kb on + strand at 4566.069 kb on + strand at 4566.069 kb on + strand at 4566.069 kb on + strand at 4566.070 kb on - strand at 4566.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 4,562,923 - -0.2 4,563,022 + QEN71_RS20560 0.28 -0.3 4,563,022 + QEN71_RS20560 0.28 -0.2 4,563,022 + QEN71_RS20560 0.28 +0.5 4,563,022 + QEN71_RS20560 0.28 +0.5 4,563,022 + QEN71_RS20560 0.28 +0.8 4,563,022 + QEN71_RS20560 0.28 +0.3 4,563,023 - QEN71_RS20560 0.29 +1.4 4,563,023 - QEN71_RS20560 0.29 -0.2 4,563,023 - QEN71_RS20560 0.29 -0.5 4,563,023 - QEN71_RS20560 0.29 +0.0 4,563,023 - QEN71_RS20560 0.29 +0.1 4,563,023 - QEN71_RS20560 0.29 -1.3 4,563,171 + QEN71_RS20560 0.82 +0.3 4,563,171 + QEN71_RS20560 0.82 -0.1 4,563,172 - QEN71_RS20560 0.82 -1.8 4,563,172 - QEN71_RS20560 0.82 +0.6 4,563,184 - QEN71_RS20560 0.86 -0.2 4,563,184 - QEN71_RS20560 0.86 +0.0 4,563,184 - QEN71_RS20560 0.86 -0.4 4,563,281 + -0.5 4,563,281 + +1.1 4,563,343 - +0.1 4,563,343 - +1.5 4,563,393 - -0.7 4,563,522 + +0.9 4,563,523 - -0.1 4,563,760 - QEN71_RS20565 0.18 +1.0 4,563,760 - QEN71_RS20565 0.18 -0.2 4,564,008 + QEN71_RS20565 0.33 -0.4 4,564,008 + QEN71_RS20565 0.33 +0.4 4,564,008 + QEN71_RS20565 0.33 +0.5 4,564,008 + QEN71_RS20565 0.33 +1.3 4,564,008 + QEN71_RS20565 0.33 -0.2 4,564,008 + QEN71_RS20565 0.33 -0.9 4,564,008 + QEN71_RS20565 0.33 -0.3 4,564,008 + QEN71_RS20565 0.33 +0.1 4,564,009 - QEN71_RS20565 0.33 -0.6 4,564,009 - QEN71_RS20565 0.33 +0.1 4,564,009 - QEN71_RS20565 0.33 -0.9 4,564,009 - QEN71_RS20565 0.33 -0.5 4,564,009 - QEN71_RS20565 0.33 -0.8 4,564,009 - QEN71_RS20565 0.33 +0.1 4,564,017 + QEN71_RS20565 0.34 -0.5 4,564,018 - QEN71_RS20565 0.34 -1.4 4,564,086 + QEN71_RS20565 0.38 -1.0 4,564,086 + QEN71_RS20565 0.38 +1.2 4,564,087 - QEN71_RS20565 0.38 -1.0 4,564,176 + QEN71_RS20565 0.43 -0.5 4,564,196 + QEN71_RS20565 0.45 -1.1 4,564,297 + QEN71_RS20565 0.51 -0.0 4,564,297 + QEN71_RS20565 0.51 +2.2 4,564,323 + QEN71_RS20565 0.52 +0.3 4,564,324 - QEN71_RS20565 0.52 -2.3 4,564,324 - QEN71_RS20565 0.52 +0.5 4,564,324 - QEN71_RS20565 0.52 -0.5 4,564,324 - QEN71_RS20565 0.52 -0.5 4,564,358 + QEN71_RS20565 0.54 -0.6 4,564,359 - QEN71_RS20565 0.54 +0.7 4,564,359 - QEN71_RS20565 0.54 +0.4 4,564,362 + QEN71_RS20565 0.55 +0.0 4,564,362 + QEN71_RS20565 0.55 +0.9 4,564,362 + QEN71_RS20565 0.55 -0.6 4,564,362 + QEN71_RS20565 0.55 +0.5 4,564,362 + QEN71_RS20565 0.55 +0.5 4,564,363 - QEN71_RS20565 0.55 -0.1 4,564,363 - QEN71_RS20565 0.55 +0.7 4,564,363 - QEN71_RS20565 0.55 +1.1 4,564,363 - QEN71_RS20565 0.55 -0.7 4,564,363 - QEN71_RS20565 0.55 -0.5 4,564,363 - QEN71_RS20565 0.55 -1.2 4,564,363 - QEN71_RS20565 0.55 -1.2 4,564,363 - QEN71_RS20565 0.55 +0.6 4,564,363 - QEN71_RS20565 0.55 +0.0 4,564,363 - QEN71_RS20565 0.55 -0.3 4,564,363 - QEN71_RS20565 0.55 -0.1 4,564,363 - QEN71_RS20565 0.55 +0.0 4,564,669 + QEN71_RS20565 0.73 +0.9 4,564,669 + QEN71_RS20565 0.73 +0.4 4,564,669 + QEN71_RS20565 0.73 -0.5 4,564,670 - QEN71_RS20565 0.73 -0.9 4,564,670 - QEN71_RS20565 0.73 -0.0 4,564,670 - QEN71_RS20565 0.73 -0.6 4,564,670 - QEN71_RS20565 0.73 -0.1 4,564,670 - QEN71_RS20565 0.73 -1.2 4,564,670 - QEN71_RS20565 0.73 -0.3 4,564,709 + QEN71_RS20565 0.76 +0.6 4,564,709 + QEN71_RS20565 0.76 +0.5 4,564,709 + QEN71_RS20565 0.76 +0.1 4,564,709 + QEN71_RS20565 0.76 +0.5 4,564,710 - QEN71_RS20565 0.76 +0.9 4,564,710 - QEN71_RS20565 0.76 -0.3 4,564,710 - QEN71_RS20565 0.76 -0.3 4,564,827 + QEN71_RS20565 0.83 +1.0 4,564,828 - QEN71_RS20565 0.83 +1.2 4,564,875 + QEN71_RS20565 0.86 +0.4 4,564,875 + QEN71_RS20565 0.86 -0.9 4,564,876 - QEN71_RS20565 0.86 -1.4 4,564,876 - QEN71_RS20565 0.86 +1.2 4,564,894 + QEN71_RS20565 0.87 +1.1 4,564,894 + QEN71_RS20565 0.87 -0.1 4,564,895 - QEN71_RS20565 0.87 -1.2 4,564,895 - QEN71_RS20565 0.87 +0.6 4,564,895 - QEN71_RS20565 0.87 +0.7 4,564,895 - QEN71_RS20565 0.87 -0.5 4,564,896 + QEN71_RS20565 0.87 -0.9 4,564,896 + QEN71_RS20565 0.87 -0.7 4,564,896 + QEN71_RS20565 0.87 -1.5 4,564,896 + QEN71_RS20565 0.87 -0.6 4,564,896 + QEN71_RS20565 0.87 +0.0 4,564,896 + QEN71_RS20565 0.87 +0.2 4,564,897 - QEN71_RS20565 0.87 -0.6 4,564,897 - QEN71_RS20565 0.87 +0.5 4,564,897 - QEN71_RS20565 0.87 +0.2 4,564,897 - QEN71_RS20565 0.87 +0.4 4,564,897 - QEN71_RS20565 0.87 +0.5 4,565,151 - +2.2 4,565,192 + QEN71_RS20570 0.26 +0.9 4,565,192 + QEN71_RS20570 0.26 +0.0 4,565,193 - QEN71_RS20570 0.27 -1.2 4,565,193 - QEN71_RS20570 0.27 +0.3 4,565,193 - QEN71_RS20570 0.27 -0.5 4,565,193 - QEN71_RS20570 0.27 -1.5 4,565,193 - QEN71_RS20570 0.27 +0.9 4,565,218 + QEN71_RS20570 0.42 -1.9 4,565,219 - QEN71_RS20570 0.42 +0.2 4,565,219 - QEN71_RS20570 0.42 +0.2 4,565,219 - QEN71_RS20570 0.42 +0.2 4,565,258 + QEN71_RS20570 0.66 -1.1 4,565,258 + QEN71_RS20570 0.66 +0.3 4,565,258 + QEN71_RS20570 0.66 -0.7 4,565,259 - QEN71_RS20570 0.67 -0.4 4,565,259 - QEN71_RS20570 0.67 -0.1 4,565,410 + +1.0 4,565,469 - -0.7 4,565,475 + -0.7 4,565,475 + +0.3 4,565,476 - -1.0 4,565,497 + -0.9 4,565,497 + -0.2 4,565,497 + -1.8 4,565,497 + -0.2 4,565,497 + -1.1 4,565,498 - +0.0 4,565,604 + -0.5 4,565,604 + +0.4 4,565,604 + +0.9 4,565,604 + -0.7 4,565,605 - -0.0 4,565,605 - -0.7 4,565,605 - +0.4 4,565,605 - +0.6 4,565,617 - -1.7 4,565,652 + -0.1 4,565,652 + +0.2 4,565,652 + -0.1 4,565,652 + +0.6 4,565,652 + -0.1 4,565,652 + -0.4 4,565,653 - -0.5 4,565,687 + +0.0 4,565,732 - -0.8 4,565,773 + -0.4 4,565,773 + -0.5 4,565,774 - -1.1 4,565,774 - +0.4 4,565,850 + +0.9 4,565,851 - +2.1 4,565,851 - +0.6 4,565,853 + +0.9 4,565,854 - -0.3 4,565,854 - -0.7 4,565,854 - +0.4 4,565,854 - +0.2 4,565,893 + +1.3 4,565,893 + -0.5 4,565,940 + -2.0 4,565,941 - +1.4 4,565,941 - -0.3 4,565,955 + +0.2 4,565,955 + +0.5 4,565,955 + -0.8 4,565,955 + +0.7 4,565,956 - +0.4 4,566,015 + -0.1 4,566,015 + +0.2 4,566,028 + -1.4 4,566,029 - +0.0 4,566,029 - +0.1 4,566,069 + +1.0 4,566,069 + +0.0 4,566,069 + +1.3 4,566,069 + -0.6 4,566,069 + -0.4 4,566,069 + -0.9 4,566,069 + -1.0 4,566,070 - +0.4 4,566,070 - +0.1
Or see this region's nucleotide sequence