Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS19660 and QEN71_RS19665 are separated by 89 nucleotides QEN71_RS19665 and QEN71_RS19670 are separated by 169 nucleotides QEN71_RS19670 and QEN71_RS19675 are separated by 31 nucleotides
QEN71_RS19660: QEN71_RS19660 - LysR substrate-binding domain-containing protein, at 4,379,578 to 4,380,834
_RS19660
QEN71_RS19665: QEN71_RS19665 - LysR family transcriptional regulator, at 4,380,924 to 4,381,037
_RS19665
QEN71_RS19670: QEN71_RS19670 - DUF1295 domain-containing protein, at 4,381,207 to 4,381,986
_RS19670
QEN71_RS19675: QEN71_RS19675 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 4,382,018 to 4,383,115
_RS19675
Position (kb)
4380
4381
4382 Strain fitness (log2 ratio)
-1
0
1 at 4380.055 kb on + strand, within QEN71_RS19660 at 4380.130 kb on + strand, within QEN71_RS19660 at 4380.131 kb on - strand, within QEN71_RS19660 at 4380.320 kb on + strand, within QEN71_RS19660 at 4380.412 kb on + strand, within QEN71_RS19660 at 4380.727 kb on + strand at 4380.727 kb on + strand at 4380.729 kb on + strand at 4380.729 kb on + strand at 4380.729 kb on + strand at 4380.819 kb on + strand at 4380.820 kb on - strand at 4380.917 kb on - strand at 4381.158 kb on - strand at 4381.158 kb on - strand at 4381.158 kb on - strand at 4381.160 kb on - strand at 4381.170 kb on + strand at 4381.170 kb on + strand at 4381.171 kb on - strand at 4381.171 kb on - strand at 4381.351 kb on + strand, within QEN71_RS19670 at 4381.352 kb on - strand, within QEN71_RS19670 at 4381.765 kb on + strand, within QEN71_RS19670 at 4381.795 kb on + strand, within QEN71_RS19670 at 4381.796 kb on - strand, within QEN71_RS19670 at 4381.796 kb on - strand, within QEN71_RS19670 at 4381.796 kb on - strand, within QEN71_RS19670 at 4381.877 kb on + strand, within QEN71_RS19670 at 4381.937 kb on - strand at 4382.010 kb on + strand at 4382.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 4,380,055 + QEN71_RS19660 0.38 -1.5 4,380,130 + QEN71_RS19660 0.44 +0.0 4,380,131 - QEN71_RS19660 0.44 -0.4 4,380,320 + QEN71_RS19660 0.59 +1.6 4,380,412 + QEN71_RS19660 0.66 +0.3 4,380,727 + -0.8 4,380,727 + +0.5 4,380,729 + -0.2 4,380,729 + +0.9 4,380,729 + +0.8 4,380,819 + +0.1 4,380,820 - -0.1 4,380,917 - +0.0 4,381,158 - +0.0 4,381,158 - -1.2 4,381,158 - +0.8 4,381,160 - -0.6 4,381,170 + +0.1 4,381,170 + +0.3 4,381,171 - -0.5 4,381,171 - -0.2 4,381,351 + QEN71_RS19670 0.18 +0.1 4,381,352 - QEN71_RS19670 0.19 -0.3 4,381,765 + QEN71_RS19670 0.72 -0.5 4,381,795 + QEN71_RS19670 0.75 +0.2 4,381,796 - QEN71_RS19670 0.76 +0.8 4,381,796 - QEN71_RS19670 0.76 -0.4 4,381,796 - QEN71_RS19670 0.76 +1.2 4,381,877 + QEN71_RS19670 0.86 -0.5 4,381,937 - -1.1 4,382,010 + -0.4 4,382,011 - +0.2
Or see this region's nucleotide sequence