Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS19650 and QEN71_RS19655 are separated by 34 nucleotides QEN71_RS19655 and QEN71_RS19660 are separated by 139 nucleotides
QEN71_RS19650: QEN71_RS19650 - hypothetical protein, at 4,377,638 to 4,378,552
_RS19650
QEN71_RS19655: QEN71_RS19655 - amidohydrolase family protein, at 4,378,587 to 4,379,438
_RS19655
QEN71_RS19660: QEN71_RS19660 - LysR substrate-binding domain-containing protein, at 4,379,578 to 4,380,834
_RS19660
Position (kb) 4378
4379
4380 Strain fitness (log2 ratio) -1
0
1 at 4377.660 kb on - strand at 4377.847 kb on - strand, within QEN71_RS19650 at 4377.917 kb on + strand, within QEN71_RS19650 at 4377.917 kb on + strand, within QEN71_RS19650 at 4377.921 kb on + strand, within QEN71_RS19650 at 4377.922 kb on - strand, within QEN71_RS19650 at 4377.936 kb on + strand, within QEN71_RS19650 at 4378.158 kb on + strand, within QEN71_RS19650 at 4378.272 kb on + strand, within QEN71_RS19650 at 4378.272 kb on + strand, within QEN71_RS19650 at 4378.272 kb on + strand, within QEN71_RS19650 at 4378.273 kb on - strand, within QEN71_RS19650 at 4378.273 kb on - strand, within QEN71_RS19650 at 4378.273 kb on - strand, within QEN71_RS19650 at 4378.276 kb on + strand, within QEN71_RS19650 at 4378.276 kb on + strand, within QEN71_RS19650 at 4378.277 kb on - strand, within QEN71_RS19650 at 4378.356 kb on + strand, within QEN71_RS19650 at 4378.356 kb on + strand, within QEN71_RS19650 at 4378.357 kb on - strand, within QEN71_RS19650 at 4378.555 kb on - strand at 4378.888 kb on + strand, within QEN71_RS19655 at 4378.889 kb on - strand, within QEN71_RS19655 at 4379.013 kb on + strand, within QEN71_RS19655 at 4379.013 kb on + strand, within QEN71_RS19655 at 4379.014 kb on - strand, within QEN71_RS19655 at 4379.014 kb on - strand, within QEN71_RS19655 at 4379.014 kb on - strand, within QEN71_RS19655 at 4379.032 kb on + strand, within QEN71_RS19655 at 4379.032 kb on + strand, within QEN71_RS19655 at 4379.172 kb on + strand, within QEN71_RS19655 at 4379.172 kb on + strand, within QEN71_RS19655 at 4379.233 kb on + strand, within QEN71_RS19655 at 4379.234 kb on - strand, within QEN71_RS19655 at 4379.237 kb on + strand, within QEN71_RS19655 at 4379.237 kb on + strand, within QEN71_RS19655 at 4379.237 kb on + strand, within QEN71_RS19655 at 4379.238 kb on - strand, within QEN71_RS19655 at 4379.512 kb on - strand at 4379.901 kb on + strand, within QEN71_RS19660 at 4380.055 kb on + strand, within QEN71_RS19660 at 4380.130 kb on + strand, within QEN71_RS19660 at 4380.131 kb on - strand, within QEN71_RS19660 at 4380.320 kb on + strand, within QEN71_RS19660 at 4380.412 kb on + strand, within QEN71_RS19660
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 4,377,660 - +0.0 4,377,847 - QEN71_RS19650 0.23 -0.4 4,377,917 + QEN71_RS19650 0.30 -0.8 4,377,917 + QEN71_RS19650 0.30 +0.3 4,377,921 + QEN71_RS19650 0.31 +0.0 4,377,922 - QEN71_RS19650 0.31 -0.5 4,377,936 + QEN71_RS19650 0.33 -0.6 4,378,158 + QEN71_RS19650 0.57 -1.0 4,378,272 + QEN71_RS19650 0.69 -0.8 4,378,272 + QEN71_RS19650 0.69 +0.3 4,378,272 + QEN71_RS19650 0.69 -0.1 4,378,273 - QEN71_RS19650 0.69 -0.6 4,378,273 - QEN71_RS19650 0.69 -0.4 4,378,273 - QEN71_RS19650 0.69 +0.8 4,378,276 + QEN71_RS19650 0.70 -0.4 4,378,276 + QEN71_RS19650 0.70 +0.7 4,378,277 - QEN71_RS19650 0.70 +0.1 4,378,356 + QEN71_RS19650 0.78 +0.4 4,378,356 + QEN71_RS19650 0.78 -0.7 4,378,357 - QEN71_RS19650 0.79 -0.1 4,378,555 - -1.1 4,378,888 + QEN71_RS19655 0.35 -0.9 4,378,889 - QEN71_RS19655 0.35 -1.0 4,379,013 + QEN71_RS19655 0.50 -0.4 4,379,013 + QEN71_RS19655 0.50 +1.1 4,379,014 - QEN71_RS19655 0.50 +0.1 4,379,014 - QEN71_RS19655 0.50 -1.3 4,379,014 - QEN71_RS19655 0.50 +0.2 4,379,032 + QEN71_RS19655 0.52 -1.1 4,379,032 + QEN71_RS19655 0.52 -0.8 4,379,172 + QEN71_RS19655 0.69 +0.1 4,379,172 + QEN71_RS19655 0.69 -0.4 4,379,233 + QEN71_RS19655 0.76 +0.2 4,379,234 - QEN71_RS19655 0.76 -0.1 4,379,237 + QEN71_RS19655 0.76 +0.3 4,379,237 + QEN71_RS19655 0.76 -0.2 4,379,237 + QEN71_RS19655 0.76 +1.6 4,379,238 - QEN71_RS19655 0.76 +0.2 4,379,512 - -0.4 4,379,901 + QEN71_RS19660 0.26 +1.6 4,380,055 + QEN71_RS19660 0.38 -1.5 4,380,130 + QEN71_RS19660 0.44 +0.0 4,380,131 - QEN71_RS19660 0.44 -0.4 4,380,320 + QEN71_RS19660 0.59 +1.6 4,380,412 + QEN71_RS19660 0.66 +0.3
Or see this region's nucleotide sequence