Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS18235 and QEN71_RS18240 are separated by 13 nucleotides QEN71_RS18240 and QEN71_RS18245 are separated by 20 nucleotides QEN71_RS18245 and QEN71_RS18250 are separated by 26 nucleotides QEN71_RS18250 and QEN71_RS18255 are separated by 113 nucleotides
QEN71_RS18235: QEN71_RS18235 - hypothetical protein, at 4,056,612 to 4,056,962
_RS18235
QEN71_RS18240: QEN71_RS18240 - RNA polymerase sigma factor, at 4,056,976 to 4,057,695
_RS18240
QEN71_RS18245: QEN71_RS18245 - cupredoxin family copper-binding protein, at 4,057,716 to 4,058,030
_RS18245
QEN71_RS18250: QEN71_RS18250 - DUF4142 domain-containing protein, at 4,058,057 to 4,058,596
_RS18250
QEN71_RS18255: QEN71_RS18255 - chloride channel protein, at 4,058,710 to 4,060,527
_RS18255
Position (kb) 4057
4058
4059 Strain fitness (log2 ratio) -1
0
1 at 4056.783 kb on - strand, within QEN71_RS18235 at 4056.785 kb on - strand, within QEN71_RS18235 at 4056.785 kb on - strand, within QEN71_RS18235 at 4056.865 kb on + strand, within QEN71_RS18235 at 4056.865 kb on + strand, within QEN71_RS18235 at 4056.865 kb on + strand, within QEN71_RS18235 at 4056.866 kb on - strand, within QEN71_RS18235 at 4056.866 kb on - strand, within QEN71_RS18235 at 4056.886 kb on - strand, within QEN71_RS18235 at 4056.977 kb on + strand at 4056.977 kb on + strand at 4056.978 kb on - strand at 4057.138 kb on + strand, within QEN71_RS18240 at 4057.139 kb on - strand, within QEN71_RS18240 at 4057.289 kb on + strand, within QEN71_RS18240 at 4057.476 kb on - strand, within QEN71_RS18240 at 4057.476 kb on - strand, within QEN71_RS18240 at 4057.487 kb on + strand, within QEN71_RS18240 at 4057.487 kb on + strand, within QEN71_RS18240 at 4057.550 kb on + strand, within QEN71_RS18240 at 4057.732 kb on - strand at 4057.774 kb on + strand, within QEN71_RS18245 at 4057.778 kb on + strand, within QEN71_RS18245 at 4057.778 kb on + strand, within QEN71_RS18245 at 4057.778 kb on + strand, within QEN71_RS18245 at 4057.778 kb on + strand, within QEN71_RS18245 at 4057.778 kb on + strand, within QEN71_RS18245 at 4057.778 kb on + strand, within QEN71_RS18245 at 4057.779 kb on - strand, within QEN71_RS18245 at 4057.779 kb on - strand, within QEN71_RS18245 at 4057.978 kb on + strand, within QEN71_RS18245 at 4057.978 kb on + strand, within QEN71_RS18245 at 4057.979 kb on - strand, within QEN71_RS18245 at 4057.979 kb on - strand, within QEN71_RS18245 at 4058.211 kb on + strand, within QEN71_RS18250 at 4058.212 kb on - strand, within QEN71_RS18250 at 4058.300 kb on + strand, within QEN71_RS18250 at 4058.300 kb on + strand, within QEN71_RS18250 at 4058.301 kb on - strand, within QEN71_RS18250 at 4058.638 kb on - strand at 4058.672 kb on + strand at 4058.673 kb on - strand at 4058.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 4,056,783 - QEN71_RS18235 0.49 -0.4 4,056,785 - QEN71_RS18235 0.49 -0.4 4,056,785 - QEN71_RS18235 0.49 -0.9 4,056,865 + QEN71_RS18235 0.72 -1.0 4,056,865 + QEN71_RS18235 0.72 +0.1 4,056,865 + QEN71_RS18235 0.72 -0.3 4,056,866 - QEN71_RS18235 0.72 -1.5 4,056,866 - QEN71_RS18235 0.72 -0.7 4,056,886 - QEN71_RS18235 0.78 -0.4 4,056,977 + +0.5 4,056,977 + -0.4 4,056,978 - +0.3 4,057,138 + QEN71_RS18240 0.23 -1.5 4,057,139 - QEN71_RS18240 0.23 -0.9 4,057,289 + QEN71_RS18240 0.43 -0.1 4,057,476 - QEN71_RS18240 0.69 -0.2 4,057,476 - QEN71_RS18240 0.69 +1.3 4,057,487 + QEN71_RS18240 0.71 +1.0 4,057,487 + QEN71_RS18240 0.71 +0.6 4,057,550 + QEN71_RS18240 0.80 -0.1 4,057,732 - -1.2 4,057,774 + QEN71_RS18245 0.18 +1.0 4,057,778 + QEN71_RS18245 0.20 +0.8 4,057,778 + QEN71_RS18245 0.20 +0.5 4,057,778 + QEN71_RS18245 0.20 -0.2 4,057,778 + QEN71_RS18245 0.20 -0.6 4,057,778 + QEN71_RS18245 0.20 +0.4 4,057,778 + QEN71_RS18245 0.20 +0.6 4,057,779 - QEN71_RS18245 0.20 +0.0 4,057,779 - QEN71_RS18245 0.20 -1.1 4,057,978 + QEN71_RS18245 0.83 +0.5 4,057,978 + QEN71_RS18245 0.83 -1.0 4,057,979 - QEN71_RS18245 0.83 -0.3 4,057,979 - QEN71_RS18245 0.83 -1.3 4,058,211 + QEN71_RS18250 0.29 -0.7 4,058,212 - QEN71_RS18250 0.29 +0.2 4,058,300 + QEN71_RS18250 0.45 -1.2 4,058,300 + QEN71_RS18250 0.45 +1.6 4,058,301 - QEN71_RS18250 0.45 +1.2 4,058,638 - -0.2 4,058,672 + -0.3 4,058,673 - +0.3 4,058,715 + -0.7
Or see this region's nucleotide sequence