Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS10200 and QEN71_RS10205 overlap by 14 nucleotides QEN71_RS10205 and QEN71_RS10210 are separated by 876 nucleotides
QEN71_RS10200: QEN71_RS10200 - ABC transporter ATP-binding protein, at 2,273,529 to 2,274,638
_RS10200
QEN71_RS10205: QEN71_RS10205 - ABC transporter ATP-binding protein, at 2,274,625 to 2,275,737
_RS10205
QEN71_RS10210: QEN71_RS10210 - FAD-binding oxidoreductase, at 2,276,614 to 2,278,008
_RS10210
Position (kb)
2274
2275
2276 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2273.640 kb on - strand, within QEN71_RS10200 at 2273.699 kb on + strand, within QEN71_RS10200 at 2273.700 kb on - strand, within QEN71_RS10200 at 2273.700 kb on - strand, within QEN71_RS10200 at 2273.700 kb on - strand, within QEN71_RS10200 at 2274.052 kb on + strand, within QEN71_RS10200 at 2274.052 kb on + strand, within QEN71_RS10200 at 2274.053 kb on - strand, within QEN71_RS10200 at 2274.053 kb on - strand, within QEN71_RS10200 at 2274.361 kb on + strand, within QEN71_RS10200 at 2274.572 kb on - strand at 2274.601 kb on + strand at 2274.639 kb on - strand at 2274.716 kb on + strand at 2274.717 kb on - strand at 2274.717 kb on - strand at 2274.809 kb on + strand, within QEN71_RS10205 at 2274.810 kb on - strand, within QEN71_RS10205 at 2274.905 kb on - strand, within QEN71_RS10205 at 2275.076 kb on + strand, within QEN71_RS10205 at 2275.176 kb on - strand, within QEN71_RS10205 at 2275.481 kb on + strand, within QEN71_RS10205 at 2275.499 kb on + strand, within QEN71_RS10205 at 2275.500 kb on - strand, within QEN71_RS10205 at 2275.500 kb on - strand, within QEN71_RS10205 at 2275.642 kb on + strand at 2275.642 kb on + strand at 2275.682 kb on + strand at 2275.682 kb on + strand at 2275.682 kb on + strand at 2275.683 kb on - strand at 2275.804 kb on + strand at 2275.834 kb on + strand at 2275.970 kb on - strand at 2276.024 kb on - strand at 2276.047 kb on + strand at 2276.070 kb on + strand at 2276.094 kb on + strand at 2276.103 kb on + strand at 2276.103 kb on + strand at 2276.103 kb on + strand at 2276.103 kb on + strand at 2276.104 kb on - strand at 2276.123 kb on - strand at 2276.143 kb on + strand at 2276.143 kb on + strand at 2276.143 kb on + strand at 2276.321 kb on + strand at 2276.322 kb on - strand at 2276.322 kb on - strand at 2276.322 kb on - strand at 2276.379 kb on - strand at 2276.492 kb on + strand at 2276.493 kb on - strand at 2276.611 kb on - strand at 2276.675 kb on + strand at 2276.675 kb on + strand at 2276.676 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 2,273,640 - QEN71_RS10200 0.10 +0.4 2,273,699 + QEN71_RS10200 0.15 -0.1 2,273,700 - QEN71_RS10200 0.15 +0.0 2,273,700 - QEN71_RS10200 0.15 -0.2 2,273,700 - QEN71_RS10200 0.15 -0.1 2,274,052 + QEN71_RS10200 0.47 -0.3 2,274,052 + QEN71_RS10200 0.47 +0.6 2,274,053 - QEN71_RS10200 0.47 +0.1 2,274,053 - QEN71_RS10200 0.47 +0.7 2,274,361 + QEN71_RS10200 0.75 -0.1 2,274,572 - -0.2 2,274,601 + -0.9 2,274,639 - +0.4 2,274,716 + -0.4 2,274,717 - -1.4 2,274,717 - -0.0 2,274,809 + QEN71_RS10205 0.17 -0.7 2,274,810 - QEN71_RS10205 0.17 +0.4 2,274,905 - QEN71_RS10205 0.25 -1.2 2,275,076 + QEN71_RS10205 0.41 +0.3 2,275,176 - QEN71_RS10205 0.50 -0.4 2,275,481 + QEN71_RS10205 0.77 -0.0 2,275,499 + QEN71_RS10205 0.79 -1.0 2,275,500 - QEN71_RS10205 0.79 -0.5 2,275,500 - QEN71_RS10205 0.79 +3.1 2,275,642 + +0.6 2,275,642 + +0.3 2,275,682 + -0.3 2,275,682 + -0.3 2,275,682 + -1.7 2,275,683 - -0.1 2,275,804 + +0.6 2,275,834 + -1.0 2,275,970 - +0.5 2,276,024 - -1.6 2,276,047 + -1.8 2,276,070 + -0.4 2,276,094 + -0.0 2,276,103 + -1.6 2,276,103 + -0.1 2,276,103 + -0.8 2,276,103 + -0.9 2,276,104 - +1.3 2,276,123 - -0.7 2,276,143 + -0.1 2,276,143 + +0.7 2,276,143 + -0.6 2,276,321 + -0.1 2,276,322 - +0.2 2,276,322 - -0.4 2,276,322 - -0.3 2,276,379 - -1.8 2,276,492 + -1.2 2,276,493 - +0.2 2,276,611 - -0.9 2,276,675 + -0.6 2,276,675 + -1.7 2,276,676 - -0.6
Or see this region's nucleotide sequence