Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10205

Experiment: Filtered_supernatant_MT183_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10200 and QEN71_RS10205 overlap by 14 nucleotidesQEN71_RS10205 and QEN71_RS10210 are separated by 876 nucleotides QEN71_RS10200: QEN71_RS10200 - ABC transporter ATP-binding protein, at 2,273,529 to 2,274,638 _RS10200 QEN71_RS10205: QEN71_RS10205 - ABC transporter ATP-binding protein, at 2,274,625 to 2,275,737 _RS10205 QEN71_RS10210: QEN71_RS10210 - FAD-binding oxidoreductase, at 2,276,614 to 2,278,008 _RS10210 Position (kb) 2274 2275 2276Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2273.640 kb on - strand, within QEN71_RS10200at 2273.699 kb on + strand, within QEN71_RS10200at 2273.700 kb on - strand, within QEN71_RS10200at 2273.700 kb on - strand, within QEN71_RS10200at 2273.700 kb on - strand, within QEN71_RS10200at 2274.052 kb on + strand, within QEN71_RS10200at 2274.052 kb on + strand, within QEN71_RS10200at 2274.053 kb on - strand, within QEN71_RS10200at 2274.053 kb on - strand, within QEN71_RS10200at 2274.361 kb on + strand, within QEN71_RS10200at 2274.572 kb on - strandat 2274.601 kb on + strandat 2274.639 kb on - strandat 2274.716 kb on + strandat 2274.717 kb on - strandat 2274.717 kb on - strandat 2274.809 kb on + strand, within QEN71_RS10205at 2274.810 kb on - strand, within QEN71_RS10205at 2274.905 kb on - strand, within QEN71_RS10205at 2275.076 kb on + strand, within QEN71_RS10205at 2275.176 kb on - strand, within QEN71_RS10205at 2275.481 kb on + strand, within QEN71_RS10205at 2275.499 kb on + strand, within QEN71_RS10205at 2275.500 kb on - strand, within QEN71_RS10205at 2275.500 kb on - strand, within QEN71_RS10205at 2275.642 kb on + strandat 2275.642 kb on + strandat 2275.682 kb on + strandat 2275.682 kb on + strandat 2275.682 kb on + strandat 2275.683 kb on - strandat 2275.804 kb on + strandat 2275.834 kb on + strandat 2275.970 kb on - strandat 2276.024 kb on - strandat 2276.047 kb on + strandat 2276.070 kb on + strandat 2276.094 kb on + strandat 2276.103 kb on + strandat 2276.103 kb on + strandat 2276.103 kb on + strandat 2276.103 kb on + strandat 2276.104 kb on - strandat 2276.123 kb on - strandat 2276.143 kb on + strandat 2276.143 kb on + strandat 2276.143 kb on + strandat 2276.321 kb on + strandat 2276.322 kb on - strandat 2276.322 kb on - strandat 2276.322 kb on - strandat 2276.379 kb on - strandat 2276.492 kb on + strandat 2276.493 kb on - strandat 2276.611 kb on - strandat 2276.675 kb on + strandat 2276.675 kb on + strandat 2276.676 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB
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2,273,640 - QEN71_RS10200 0.10 +0.4
2,273,699 + QEN71_RS10200 0.15 -0.1
2,273,700 - QEN71_RS10200 0.15 +0.0
2,273,700 - QEN71_RS10200 0.15 -0.2
2,273,700 - QEN71_RS10200 0.15 -0.1
2,274,052 + QEN71_RS10200 0.47 -0.3
2,274,052 + QEN71_RS10200 0.47 +0.6
2,274,053 - QEN71_RS10200 0.47 +0.1
2,274,053 - QEN71_RS10200 0.47 +0.7
2,274,361 + QEN71_RS10200 0.75 -0.1
2,274,572 - -0.2
2,274,601 + -0.9
2,274,639 - +0.4
2,274,716 + -0.4
2,274,717 - -1.4
2,274,717 - -0.0
2,274,809 + QEN71_RS10205 0.17 -0.7
2,274,810 - QEN71_RS10205 0.17 +0.4
2,274,905 - QEN71_RS10205 0.25 -1.2
2,275,076 + QEN71_RS10205 0.41 +0.3
2,275,176 - QEN71_RS10205 0.50 -0.4
2,275,481 + QEN71_RS10205 0.77 -0.0
2,275,499 + QEN71_RS10205 0.79 -1.0
2,275,500 - QEN71_RS10205 0.79 -0.5
2,275,500 - QEN71_RS10205 0.79 +3.1
2,275,642 + +0.6
2,275,642 + +0.3
2,275,682 + -0.3
2,275,682 + -0.3
2,275,682 + -1.7
2,275,683 - -0.1
2,275,804 + +0.6
2,275,834 + -1.0
2,275,970 - +0.5
2,276,024 - -1.6
2,276,047 + -1.8
2,276,070 + -0.4
2,276,094 + -0.0
2,276,103 + -1.6
2,276,103 + -0.1
2,276,103 + -0.8
2,276,103 + -0.9
2,276,104 - +1.3
2,276,123 - -0.7
2,276,143 + -0.1
2,276,143 + +0.7
2,276,143 + -0.6
2,276,321 + -0.1
2,276,322 - +0.2
2,276,322 - -0.4
2,276,322 - -0.3
2,276,379 - -1.8
2,276,492 + -1.2
2,276,493 - +0.2
2,276,611 - -0.9
2,276,675 + -0.6
2,276,675 + -1.7
2,276,676 - -0.6

Or see this region's nucleotide sequence