Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05830

Experiment: Filtered_supernatant_MT183_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05825 and QEN71_RS05830 are separated by 102 nucleotidesQEN71_RS05830 and QEN71_RS05835 are separated by 705 nucleotides QEN71_RS05825: QEN71_RS05825 - lysine--tRNA ligase, at 1,290,771 to 1,292,306 _RS05825 QEN71_RS05830: QEN71_RS05830 - peptide chain release factor 2, at 1,292,409 to 1,293,513 _RS05830 QEN71_RS05835: QEN71_RS05835 - single-stranded-DNA-specific exonuclease RecJ, at 1,294,219 to 1,295,925 _RS05835 Position (kb) 1292 1293 1294Strain fitness (log2 ratio) -2 -1 0 1 2at 1292.310 kb on - strandat 1292.310 kb on - strandat 1292.411 kb on - strandat 1292.411 kb on - strandat 1292.411 kb on - strandat 1292.411 kb on - strandat 1292.411 kb on - strandat 1292.411 kb on - strandat 1292.411 kb on - strandat 1292.411 kb on - strandat 1293.531 kb on - strandat 1293.531 kb on - strandat 1293.531 kb on - strandat 1293.535 kb on - strandat 1293.535 kb on - strandat 1293.535 kb on - strandat 1293.609 kb on - strandat 1294.177 kb on - strandat 1294.177 kb on - strandat 1294.220 kb on + strandat 1294.220 kb on + strandat 1294.220 kb on + strandat 1294.220 kb on + strandat 1294.220 kb on + strandat 1294.220 kb on + strandat 1294.221 kb on - strandat 1294.221 kb on - strandat 1294.221 kb on - strandat 1294.221 kb on - strandat 1294.290 kb on - strandat 1294.290 kb on - strandat 1294.290 kb on - strandat 1294.323 kb on + strandat 1294.323 kb on + strandat 1294.323 kb on + strandat 1294.324 kb on - strandat 1294.324 kb on - strandat 1294.499 kb on + strand, within QEN71_RS05835at 1294.499 kb on + strand, within QEN71_RS05835at 1294.499 kb on + strand, within QEN71_RS05835at 1294.499 kb on + strand, within QEN71_RS05835at 1294.500 kb on - strand, within QEN71_RS05835at 1294.500 kb on - strand, within QEN71_RS05835at 1294.500 kb on - strand, within QEN71_RS05835

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB
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1,292,310 - +2.1
1,292,310 - -0.2
1,292,411 - -0.9
1,292,411 - +0.3
1,292,411 - +0.3
1,292,411 - +1.1
1,292,411 - +0.2
1,292,411 - +0.1
1,292,411 - +0.3
1,292,411 - +0.6
1,293,531 - +0.3
1,293,531 - +0.1
1,293,531 - +0.9
1,293,535 - +0.0
1,293,535 - -0.8
1,293,535 - +0.3
1,293,609 - +1.1
1,294,177 - -0.2
1,294,177 - -0.0
1,294,220 + -0.5
1,294,220 + -0.9
1,294,220 + +0.0
1,294,220 + +0.3
1,294,220 + -0.6
1,294,220 + +1.0
1,294,221 - -0.3
1,294,221 - +0.2
1,294,221 - +0.4
1,294,221 - -0.3
1,294,290 - -1.6
1,294,290 - +1.2
1,294,290 - +0.1
1,294,323 + -0.5
1,294,323 + +0.0
1,294,323 + +0.5
1,294,324 - -0.3
1,294,324 - +0.6
1,294,499 + QEN71_RS05835 0.16 -0.6
1,294,499 + QEN71_RS05835 0.16 +0.5
1,294,499 + QEN71_RS05835 0.16 -0.1
1,294,499 + QEN71_RS05835 0.16 -2.1
1,294,500 - QEN71_RS05835 0.16 -0.0
1,294,500 - QEN71_RS05835 0.16 -0.4
1,294,500 - QEN71_RS05835 0.16 +0.4

Or see this region's nucleotide sequence