Experiment: Filtered_supernatant_MT183_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03385 and QEN71_RS03390 are separated by 36 nucleotides QEN71_RS03390 and QEN71_RS03395 are separated by 9 nucleotides QEN71_RS03395 and QEN71_RS03400 are separated by 162 nucleotides
QEN71_RS03385: QEN71_RS03385 - DNA translocase FtsK, at 752,473 to 754,788
_RS03385
QEN71_RS03390: QEN71_RS03390 - outer membrane lipoprotein chaperone LolA, at 754,825 to 755,520
_RS03390
QEN71_RS03395: QEN71_RS03395 - LysR family transcriptional regulator, at 755,530 to 756,444
_RS03395
QEN71_RS03400: QEN71_RS03400 - agmatinase, at 756,607 to 757,599
_RS03400
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1 at 754.809 kb on + strand at 754.809 kb on + strand at 754.822 kb on + strand at 754.822 kb on + strand at 754.822 kb on + strand at 754.822 kb on + strand at 754.822 kb on + strand at 755.519 kb on - strand at 755.519 kb on - strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.539 kb on + strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.540 kb on - strand at 755.568 kb on + strand at 755.568 kb on + strand at 755.569 kb on - strand at 755.577 kb on + strand at 755.624 kb on + strand, within QEN71_RS03395 at 755.625 kb on + strand, within QEN71_RS03395 at 755.625 kb on + strand, within QEN71_RS03395 at 755.626 kb on - strand, within QEN71_RS03395 at 755.626 kb on - strand, within QEN71_RS03395 at 755.626 kb on - strand, within QEN71_RS03395 at 755.626 kb on - strand, within QEN71_RS03395 at 755.626 kb on - strand, within QEN71_RS03395 at 755.690 kb on + strand, within QEN71_RS03395 at 755.690 kb on + strand, within QEN71_RS03395 at 755.690 kb on + strand, within QEN71_RS03395 at 755.690 kb on + strand, within QEN71_RS03395 at 755.691 kb on - strand, within QEN71_RS03395 at 755.691 kb on - strand, within QEN71_RS03395 at 755.718 kb on - strand, within QEN71_RS03395 at 755.826 kb on - strand, within QEN71_RS03395 at 755.826 kb on - strand, within QEN71_RS03395 at 755.912 kb on + strand, within QEN71_RS03395 at 755.945 kb on + strand, within QEN71_RS03395 at 755.945 kb on + strand, within QEN71_RS03395 at 755.946 kb on - strand, within QEN71_RS03395 at 755.946 kb on - strand, within QEN71_RS03395 at 755.946 kb on - strand, within QEN71_RS03395 at 755.975 kb on + strand, within QEN71_RS03395 at 755.975 kb on + strand, within QEN71_RS03395 at 756.100 kb on - strand, within QEN71_RS03395 at 756.123 kb on + strand, within QEN71_RS03395 at 756.124 kb on - strand, within QEN71_RS03395 at 756.124 kb on - strand, within QEN71_RS03395 at 756.124 kb on - strand, within QEN71_RS03395 at 756.344 kb on - strand, within QEN71_RS03395 at 756.354 kb on + strand at 756.355 kb on - strand at 756.355 kb on - strand at 756.445 kb on - strand at 756.497 kb on + strand at 756.497 kb on + strand at 756.497 kb on + strand at 756.498 kb on - strand at 756.498 kb on - strand at 756.498 kb on - strand at 756.498 kb on - strand at 756.498 kb on - strand at 756.612 kb on + strand at 756.613 kb on - strand at 756.613 kb on - strand at 756.613 kb on - strand at 756.847 kb on + strand, within QEN71_RS03400 at 756.847 kb on + strand, within QEN71_RS03400 at 756.847 kb on + strand, within QEN71_RS03400 at 756.847 kb on + strand, within QEN71_RS03400 at 756.847 kb on + strand, within QEN71_RS03400 at 756.847 kb on + strand, within QEN71_RS03400 at 756.847 kb on + strand, within QEN71_RS03400 at 756.848 kb on - strand, within QEN71_RS03400 at 756.848 kb on - strand, within QEN71_RS03400 at 756.922 kb on + strand, within QEN71_RS03400 at 756.922 kb on + strand, within QEN71_RS03400 at 756.922 kb on + strand, within QEN71_RS03400 at 756.922 kb on + strand, within QEN71_RS03400 at 756.922 kb on + strand, within QEN71_RS03400 at 756.922 kb on + strand, within QEN71_RS03400 at 756.923 kb on - strand, within QEN71_RS03400 at 756.923 kb on - strand, within QEN71_RS03400 at 756.923 kb on - strand, within QEN71_RS03400 at 756.923 kb on - strand, within QEN71_RS03400 at 756.923 kb on - strand, within QEN71_RS03400 at 756.925 kb on - strand, within QEN71_RS03400 at 756.925 kb on - strand, within QEN71_RS03400 at 756.961 kb on + strand, within QEN71_RS03400 at 756.961 kb on + strand, within QEN71_RS03400 at 756.961 kb on + strand, within QEN71_RS03400 at 757.054 kb on + strand, within QEN71_RS03400 at 757.054 kb on + strand, within QEN71_RS03400 at 757.054 kb on + strand, within QEN71_RS03400 at 757.055 kb on - strand, within QEN71_RS03400 at 757.213 kb on + strand, within QEN71_RS03400 at 757.213 kb on + strand, within QEN71_RS03400 at 757.214 kb on - strand, within QEN71_RS03400 at 757.342 kb on + strand, within QEN71_RS03400 at 757.342 kb on + strand, within QEN71_RS03400 at 757.343 kb on - strand, within QEN71_RS03400 at 757.343 kb on - strand, within QEN71_RS03400 at 757.343 kb on - strand, within QEN71_RS03400 at 757.343 kb on - strand, within QEN71_RS03400
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT183_in_LB remove 754,809 + +0.3 754,809 + +0.0 754,822 + +0.6 754,822 + +0.0 754,822 + +0.5 754,822 + +0.3 754,822 + +0.5 755,519 - -0.5 755,519 - -0.4 755,539 + +0.6 755,539 + -0.1 755,539 + -0.8 755,539 + +0.2 755,539 + -1.2 755,539 + +0.7 755,539 + -0.1 755,539 + +0.3 755,539 + -0.8 755,539 + -1.1 755,540 - -0.2 755,540 - -0.3 755,540 - -0.9 755,540 - -0.3 755,540 - -0.2 755,540 - -0.3 755,540 - -0.5 755,540 - -1.2 755,568 + -0.9 755,568 + +0.0 755,569 - -0.7 755,577 + +0.9 755,624 + QEN71_RS03395 0.10 -1.4 755,625 + QEN71_RS03395 0.10 -0.2 755,625 + QEN71_RS03395 0.10 -0.2 755,626 - QEN71_RS03395 0.10 +0.4 755,626 - QEN71_RS03395 0.10 +1.2 755,626 - QEN71_RS03395 0.10 -1.0 755,626 - QEN71_RS03395 0.10 -1.0 755,626 - QEN71_RS03395 0.10 -0.1 755,690 + QEN71_RS03395 0.17 -1.8 755,690 + QEN71_RS03395 0.17 -1.0 755,690 + QEN71_RS03395 0.17 +0.2 755,690 + QEN71_RS03395 0.17 +1.0 755,691 - QEN71_RS03395 0.18 -1.0 755,691 - QEN71_RS03395 0.18 +0.3 755,718 - QEN71_RS03395 0.21 -1.0 755,826 - QEN71_RS03395 0.32 -0.3 755,826 - QEN71_RS03395 0.32 -0.4 755,912 + QEN71_RS03395 0.42 +0.2 755,945 + QEN71_RS03395 0.45 -0.6 755,945 + QEN71_RS03395 0.45 +1.3 755,946 - QEN71_RS03395 0.45 +0.6 755,946 - QEN71_RS03395 0.45 -0.1 755,946 - QEN71_RS03395 0.45 -1.3 755,975 + QEN71_RS03395 0.49 -1.3 755,975 + QEN71_RS03395 0.49 -2.2 756,100 - QEN71_RS03395 0.62 -0.3 756,123 + QEN71_RS03395 0.65 -0.0 756,124 - QEN71_RS03395 0.65 +0.0 756,124 - QEN71_RS03395 0.65 -0.1 756,124 - QEN71_RS03395 0.65 -0.3 756,344 - QEN71_RS03395 0.89 -0.8 756,354 + -1.1 756,355 - -0.7 756,355 - +0.6 756,445 - +0.1 756,497 + -1.7 756,497 + -0.7 756,497 + -0.5 756,498 - +0.3 756,498 - -2.3 756,498 - -1.6 756,498 - -0.2 756,498 - -0.4 756,612 + -0.8 756,613 - -0.3 756,613 - -1.7 756,613 - -0.5 756,847 + QEN71_RS03400 0.24 -0.4 756,847 + QEN71_RS03400 0.24 -0.5 756,847 + QEN71_RS03400 0.24 -1.1 756,847 + QEN71_RS03400 0.24 +0.3 756,847 + QEN71_RS03400 0.24 -0.3 756,847 + QEN71_RS03400 0.24 -0.7 756,847 + QEN71_RS03400 0.24 +0.6 756,848 - QEN71_RS03400 0.24 -0.9 756,848 - QEN71_RS03400 0.24 -0.6 756,922 + QEN71_RS03400 0.32 -0.2 756,922 + QEN71_RS03400 0.32 -1.0 756,922 + QEN71_RS03400 0.32 +0.4 756,922 + QEN71_RS03400 0.32 +0.1 756,922 + QEN71_RS03400 0.32 -1.1 756,922 + QEN71_RS03400 0.32 -0.5 756,923 - QEN71_RS03400 0.32 -0.5 756,923 - QEN71_RS03400 0.32 -0.4 756,923 - QEN71_RS03400 0.32 -0.4 756,923 - QEN71_RS03400 0.32 -0.3 756,923 - QEN71_RS03400 0.32 +0.2 756,925 - QEN71_RS03400 0.32 +0.1 756,925 - QEN71_RS03400 0.32 -0.6 756,961 + QEN71_RS03400 0.36 -0.9 756,961 + QEN71_RS03400 0.36 -0.8 756,961 + QEN71_RS03400 0.36 +0.0 757,054 + QEN71_RS03400 0.45 +1.0 757,054 + QEN71_RS03400 0.45 -0.3 757,054 + QEN71_RS03400 0.45 -0.3 757,055 - QEN71_RS03400 0.45 +0.6 757,213 + QEN71_RS03400 0.61 +0.1 757,213 + QEN71_RS03400 0.61 +0.3 757,214 - QEN71_RS03400 0.61 -1.6 757,342 + QEN71_RS03400 0.74 -2.4 757,342 + QEN71_RS03400 0.74 +0.7 757,343 - QEN71_RS03400 0.74 -2.0 757,343 - QEN71_RS03400 0.74 +0.0 757,343 - QEN71_RS03400 0.74 +1.0 757,343 - QEN71_RS03400 0.74 -0.2
Or see this region's nucleotide sequence