Experiment: Filtered_supernatant_MT71_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS38410 and QEN71_RS38415 overlap by 4 nucleotides QEN71_RS38415 and QEN71_RS38420 are separated by 115 nucleotides
QEN71_RS38410: QEN71_RS38410 - sugar ABC transporter ATP-binding protein, at 2,002,758 to 2,004,314
_RS38410
QEN71_RS38415: QEN71_RS38415 - DUF2291 domain-containing protein, at 2,004,311 to 2,004,958
_RS38415
QEN71_RS38420: QEN71_RS38420 - D-ribose ABC transporter substrate-binding protein, at 2,005,074 to 2,006,012
_RS38420
Position (kb)
2004
2005 Strain fitness (log2 ratio)
-2
-1
0
1 at 2003.382 kb on + strand, within QEN71_RS38410 at 2003.382 kb on + strand, within QEN71_RS38410 at 2003.383 kb on - strand, within QEN71_RS38410 at 2003.426 kb on - strand, within QEN71_RS38410 at 2003.426 kb on - strand, within QEN71_RS38410 at 2003.674 kb on - strand, within QEN71_RS38410 at 2003.706 kb on - strand, within QEN71_RS38410 at 2003.964 kb on - strand, within QEN71_RS38410 at 2004.253 kb on + strand at 2004.375 kb on + strand at 2004.457 kb on - strand, within QEN71_RS38415 at 2004.708 kb on + strand, within QEN71_RS38415 at 2004.714 kb on + strand, within QEN71_RS38415 at 2004.715 kb on - strand, within QEN71_RS38415 at 2004.715 kb on - strand, within QEN71_RS38415 at 2004.843 kb on + strand, within QEN71_RS38415 at 2004.843 kb on + strand, within QEN71_RS38415 at 2004.858 kb on + strand, within QEN71_RS38415 at 2004.858 kb on + strand, within QEN71_RS38415 at 2004.859 kb on - strand, within QEN71_RS38415 at 2004.954 kb on + strand at 2004.954 kb on + strand at 2005.070 kb on + strand at 2005.071 kb on - strand at 2005.071 kb on - strand at 2005.071 kb on - strand at 2005.071 kb on - strand at 2005.071 kb on - strand at 2005.177 kb on + strand, within QEN71_RS38420 at 2005.177 kb on + strand, within QEN71_RS38420 at 2005.177 kb on + strand, within QEN71_RS38420 at 2005.177 kb on + strand, within QEN71_RS38420 at 2005.420 kb on + strand, within QEN71_RS38420 at 2005.421 kb on - strand, within QEN71_RS38420 at 2005.499 kb on - strand, within QEN71_RS38420 at 2005.555 kb on + strand, within QEN71_RS38420 at 2005.555 kb on + strand, within QEN71_RS38420 at 2005.555 kb on + strand, within QEN71_RS38420 at 2005.555 kb on + strand, within QEN71_RS38420 at 2005.555 kb on + strand, within QEN71_RS38420 at 2005.615 kb on + strand, within QEN71_RS38420 at 2005.615 kb on + strand, within QEN71_RS38420 at 2005.615 kb on + strand, within QEN71_RS38420 at 2005.615 kb on + strand, within QEN71_RS38420 at 2005.615 kb on + strand, within QEN71_RS38420 at 2005.616 kb on - strand, within QEN71_RS38420 at 2005.616 kb on - strand, within QEN71_RS38420 at 2005.913 kb on + strand, within QEN71_RS38420 at 2005.913 kb on + strand, within QEN71_RS38420 at 2005.914 kb on - strand, within QEN71_RS38420
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT71_in_LB remove 2,003,382 + QEN71_RS38410 0.40 -0.7 2,003,382 + QEN71_RS38410 0.40 -0.7 2,003,383 - QEN71_RS38410 0.40 -0.3 2,003,426 - QEN71_RS38410 0.43 +0.1 2,003,426 - QEN71_RS38410 0.43 +0.0 2,003,674 - QEN71_RS38410 0.59 -0.7 2,003,706 - QEN71_RS38410 0.61 +1.3 2,003,964 - QEN71_RS38410 0.77 +0.6 2,004,253 + +0.1 2,004,375 + -1.7 2,004,457 - QEN71_RS38415 0.23 -1.0 2,004,708 + QEN71_RS38415 0.61 -0.3 2,004,714 + QEN71_RS38415 0.62 +0.2 2,004,715 - QEN71_RS38415 0.62 -1.5 2,004,715 - QEN71_RS38415 0.62 -1.6 2,004,843 + QEN71_RS38415 0.82 -0.3 2,004,843 + QEN71_RS38415 0.82 -2.1 2,004,858 + QEN71_RS38415 0.84 -0.6 2,004,858 + QEN71_RS38415 0.84 -0.2 2,004,859 - QEN71_RS38415 0.85 -0.3 2,004,954 + -0.4 2,004,954 + -0.3 2,005,070 + -1.1 2,005,071 - +0.6 2,005,071 - +0.1 2,005,071 - -0.2 2,005,071 - -0.3 2,005,071 - +1.4 2,005,177 + QEN71_RS38420 0.11 -0.3 2,005,177 + QEN71_RS38420 0.11 +0.3 2,005,177 + QEN71_RS38420 0.11 -0.9 2,005,177 + QEN71_RS38420 0.11 +0.2 2,005,420 + QEN71_RS38420 0.37 +0.4 2,005,421 - QEN71_RS38420 0.37 -0.3 2,005,499 - QEN71_RS38420 0.45 -0.3 2,005,555 + QEN71_RS38420 0.51 -1.5 2,005,555 + QEN71_RS38420 0.51 -2.2 2,005,555 + QEN71_RS38420 0.51 +0.3 2,005,555 + QEN71_RS38420 0.51 -0.6 2,005,555 + QEN71_RS38420 0.51 -0.5 2,005,615 + QEN71_RS38420 0.58 -0.5 2,005,615 + QEN71_RS38420 0.58 +1.1 2,005,615 + QEN71_RS38420 0.58 +0.1 2,005,615 + QEN71_RS38420 0.58 -1.6 2,005,615 + QEN71_RS38420 0.58 +0.1 2,005,616 - QEN71_RS38420 0.58 +1.1 2,005,616 - QEN71_RS38420 0.58 -0.3 2,005,913 + QEN71_RS38420 0.89 -0.7 2,005,913 + QEN71_RS38420 0.89 -1.1 2,005,914 - QEN71_RS38420 0.89 +0.7
Or see this region's nucleotide sequence