Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37110

Experiment: Filtered_supernatant_MT71_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37105 and QEN71_RS37110 overlap by 11 nucleotidesQEN71_RS37110 and QEN71_RS37115 are separated by 11 nucleotidesQEN71_RS37115 and QEN71_RS37120 are separated by 66 nucleotides QEN71_RS37105: QEN71_RS37105 - MmgE/PrpD family protein, at 1,692,273 to 1,693,658 _RS37105 QEN71_RS37110: QEN71_RS37110 - SDR family oxidoreductase, at 1,693,648 to 1,694,433 _RS37110 QEN71_RS37115: QEN71_RS37115 - N-acyl homoserine lactonase family protein, at 1,694,445 to 1,695,245 _RS37115 QEN71_RS37120: QEN71_RS37120 - MFS transporter, at 1,695,312 to 1,696,727 _RS37120 Position (kb) 1693 1694 1695Strain fitness (log2 ratio) -1 0 1at 1692.835 kb on + strand, within QEN71_RS37105at 1692.835 kb on + strand, within QEN71_RS37105at 1692.836 kb on - strand, within QEN71_RS37105at 1692.836 kb on - strand, within QEN71_RS37105at 1693.183 kb on + strand, within QEN71_RS37105at 1693.248 kb on + strand, within QEN71_RS37105at 1693.325 kb on + strand, within QEN71_RS37105at 1693.326 kb on - strand, within QEN71_RS37105at 1693.326 kb on - strand, within QEN71_RS37105at 1693.335 kb on + strand, within QEN71_RS37105at 1693.336 kb on - strand, within QEN71_RS37105at 1693.336 kb on - strand, within QEN71_RS37105at 1693.336 kb on - strand, within QEN71_RS37105at 1693.459 kb on + strand, within QEN71_RS37105at 1693.519 kb on + strand, within QEN71_RS37105at 1693.890 kb on + strand, within QEN71_RS37110at 1693.891 kb on - strand, within QEN71_RS37110at 1693.967 kb on + strand, within QEN71_RS37110at 1694.188 kb on + strand, within QEN71_RS37110at 1694.255 kb on + strand, within QEN71_RS37110at 1694.256 kb on - strand, within QEN71_RS37110at 1694.299 kb on - strand, within QEN71_RS37110at 1694.433 kb on + strandat 1694.434 kb on - strandat 1694.447 kb on - strandat 1694.608 kb on + strand, within QEN71_RS37115at 1694.609 kb on - strand, within QEN71_RS37115at 1694.609 kb on - strand, within QEN71_RS37115at 1694.609 kb on - strand, within QEN71_RS37115at 1694.885 kb on - strand, within QEN71_RS37115at 1694.885 kb on - strand, within QEN71_RS37115at 1694.954 kb on - strand, within QEN71_RS37115at 1695.091 kb on + strand, within QEN71_RS37115at 1695.092 kb on - strand, within QEN71_RS37115at 1695.092 kb on - strand, within QEN71_RS37115at 1695.128 kb on - strand, within QEN71_RS37115at 1695.214 kb on + strandat 1695.215 kb on - strandat 1695.223 kb on + strandat 1695.224 kb on - strandat 1695.294 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT71_in_LB
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1,692,835 + QEN71_RS37105 0.41 -0.7
1,692,835 + QEN71_RS37105 0.41 -0.4
1,692,836 - QEN71_RS37105 0.41 -0.5
1,692,836 - QEN71_RS37105 0.41 -1.2
1,693,183 + QEN71_RS37105 0.66 +0.5
1,693,248 + QEN71_RS37105 0.70 -0.2
1,693,325 + QEN71_RS37105 0.76 +1.1
1,693,326 - QEN71_RS37105 0.76 -1.7
1,693,326 - QEN71_RS37105 0.76 +0.2
1,693,335 + QEN71_RS37105 0.77 +0.2
1,693,336 - QEN71_RS37105 0.77 +0.5
1,693,336 - QEN71_RS37105 0.77 +0.5
1,693,336 - QEN71_RS37105 0.77 +0.1
1,693,459 + QEN71_RS37105 0.86 -0.4
1,693,519 + QEN71_RS37105 0.90 +0.0
1,693,890 + QEN71_RS37110 0.31 -0.2
1,693,891 - QEN71_RS37110 0.31 +0.2
1,693,967 + QEN71_RS37110 0.41 -0.7
1,694,188 + QEN71_RS37110 0.69 -0.3
1,694,255 + QEN71_RS37110 0.77 -0.3
1,694,256 - QEN71_RS37110 0.77 +0.3
1,694,299 - QEN71_RS37110 0.83 -1.1
1,694,433 + -1.7
1,694,434 - -0.7
1,694,447 - -0.4
1,694,608 + QEN71_RS37115 0.20 -0.8
1,694,609 - QEN71_RS37115 0.20 -0.5
1,694,609 - QEN71_RS37115 0.20 +1.5
1,694,609 - QEN71_RS37115 0.20 -0.4
1,694,885 - QEN71_RS37115 0.55 -0.0
1,694,885 - QEN71_RS37115 0.55 -0.5
1,694,954 - QEN71_RS37115 0.64 -0.2
1,695,091 + QEN71_RS37115 0.81 +1.5
1,695,092 - QEN71_RS37115 0.81 -0.5
1,695,092 - QEN71_RS37115 0.81 -0.1
1,695,128 - QEN71_RS37115 0.85 -0.2
1,695,214 + -1.5
1,695,215 - -0.2
1,695,223 + -0.8
1,695,224 - +1.1
1,695,294 + -0.9

Or see this region's nucleotide sequence