Experiment: Filtered_supernatant_MT71_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32980 and QEN71_RS32985 are separated by 12 nucleotides QEN71_RS32985 and QEN71_RS32990 are separated by 38 nucleotides
QEN71_RS32980: QEN71_RS32980 - DUF2955 domain-containing protein, at 727,231 to 728,274
_RS32980
QEN71_RS32985: QEN71_RS32985 - potassium channel family protein, at 728,287 to 728,673
_RS32985
QEN71_RS32990: QEN71_RS32990 - hypothetical protein, at 728,712 to 729,731
_RS32990
Position (kb) 728
729 Strain fitness (log2 ratio) -2
-1
0
1 at 727.758 kb on + strand, within QEN71_RS32980 at 727.795 kb on + strand, within QEN71_RS32980 at 727.825 kb on + strand, within QEN71_RS32980 at 727.825 kb on + strand, within QEN71_RS32980 at 727.825 kb on + strand, within QEN71_RS32980 at 727.826 kb on - strand, within QEN71_RS32980 at 727.826 kb on - strand, within QEN71_RS32980 at 727.826 kb on - strand, within QEN71_RS32980 at 728.053 kb on + strand, within QEN71_RS32980 at 728.143 kb on + strand, within QEN71_RS32980 at 728.307 kb on + strand at 728.366 kb on - strand, within QEN71_RS32985 at 728.425 kb on + strand, within QEN71_RS32985 at 728.679 kb on - strand at 728.795 kb on - strand at 728.795 kb on - strand at 728.925 kb on + strand, within QEN71_RS32990 at 728.925 kb on + strand, within QEN71_RS32990 at 729.048 kb on + strand, within QEN71_RS32990 at 729.069 kb on + strand, within QEN71_RS32990 at 729.078 kb on + strand, within QEN71_RS32990 at 729.078 kb on + strand, within QEN71_RS32990 at 729.351 kb on + strand, within QEN71_RS32990 at 729.373 kb on - strand, within QEN71_RS32990 at 729.408 kb on + strand, within QEN71_RS32990 at 729.409 kb on - strand, within QEN71_RS32990 at 729.409 kb on - strand, within QEN71_RS32990 at 729.529 kb on - strand, within QEN71_RS32990 at 729.546 kb on + strand, within QEN71_RS32990
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT71_in_LB remove 727,758 + QEN71_RS32980 0.50 +0.2 727,795 + QEN71_RS32980 0.54 +1.6 727,825 + QEN71_RS32980 0.57 +0.3 727,825 + QEN71_RS32980 0.57 -0.8 727,825 + QEN71_RS32980 0.57 -0.6 727,826 - QEN71_RS32980 0.57 -0.3 727,826 - QEN71_RS32980 0.57 -0.6 727,826 - QEN71_RS32980 0.57 +0.2 728,053 + QEN71_RS32980 0.79 -2.6 728,143 + QEN71_RS32980 0.87 -0.4 728,307 + +1.0 728,366 - QEN71_RS32985 0.20 -0.4 728,425 + QEN71_RS32985 0.36 +0.2 728,679 - -0.8 728,795 - -0.9 728,795 - +1.5 728,925 + QEN71_RS32990 0.21 -1.1 728,925 + QEN71_RS32990 0.21 +0.7 729,048 + QEN71_RS32990 0.33 +0.7 729,069 + QEN71_RS32990 0.35 -0.3 729,078 + QEN71_RS32990 0.36 -1.2 729,078 + QEN71_RS32990 0.36 +0.9 729,351 + QEN71_RS32990 0.63 +0.7 729,373 - QEN71_RS32990 0.65 -0.0 729,408 + QEN71_RS32990 0.68 -1.4 729,409 - QEN71_RS32990 0.68 -0.2 729,409 - QEN71_RS32990 0.68 -0.2 729,529 - QEN71_RS32990 0.80 -0.1 729,546 + QEN71_RS32990 0.82 +1.2
Or see this region's nucleotide sequence