Experiment: Filtered_supernatant_MT71_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30555 and QEN71_RS30560 overlap by 4 nucleotides QEN71_RS30560 and QEN71_RS30565 are separated by 104 nucleotides QEN71_RS30565 and QEN71_RS30570 are separated by 68 nucleotides QEN71_RS30570 and QEN71_RS30575 are separated by 299 nucleotides
QEN71_RS30555: QEN71_RS30555 - hydroxymethylglutaryl-CoA lyase, at 194,536 to 195,486
_RS30555
QEN71_RS30560: QEN71_RS30560 - PaaI family thioesterase, at 195,483 to 195,869
_RS30560
QEN71_RS30565: QEN71_RS30565 - MarR family transcriptional regulator, at 195,974 to 196,525
_RS30565
QEN71_RS30570: QEN71_RS30570 - DUF2945 domain-containing protein, at 196,594 to 196,812
_RS30570
QEN71_RS30575: QEN71_RS30575 - esterase, at 197,112 to 197,789
_RS30575
Position (kb) 195
196
197 Strain fitness (log2 ratio) -1
0
1
2 at 195.194 kb on - strand, within QEN71_RS30555 at 195.226 kb on + strand, within QEN71_RS30555 at 195.227 kb on - strand, within QEN71_RS30555 at 195.274 kb on + strand, within QEN71_RS30555 at 195.274 kb on + strand, within QEN71_RS30555 at 195.274 kb on + strand, within QEN71_RS30555 at 195.642 kb on - strand, within QEN71_RS30560 at 195.648 kb on - strand, within QEN71_RS30560 at 195.714 kb on + strand, within QEN71_RS30560 at 195.757 kb on + strand, within QEN71_RS30560 at 195.757 kb on + strand, within QEN71_RS30560 at 195.864 kb on - strand at 195.864 kb on - strand at 195.864 kb on - strand at 195.864 kb on - strand at 195.864 kb on - strand at 195.868 kb on - strand at 195.894 kb on - strand at 195.908 kb on - strand at 195.927 kb on + strand at 195.928 kb on - strand at 195.928 kb on - strand at 195.988 kb on + strand at 196.103 kb on + strand, within QEN71_RS30565 at 196.103 kb on + strand, within QEN71_RS30565 at 196.104 kb on - strand, within QEN71_RS30565 at 196.104 kb on - strand, within QEN71_RS30565 at 196.127 kb on + strand, within QEN71_RS30565 at 196.735 kb on + strand, within QEN71_RS30570 at 196.735 kb on + strand, within QEN71_RS30570 at 196.735 kb on + strand, within QEN71_RS30570 at 196.736 kb on - strand, within QEN71_RS30570 at 197.198 kb on - strand, within QEN71_RS30575 at 197.229 kb on + strand, within QEN71_RS30575 at 197.229 kb on + strand, within QEN71_RS30575 at 197.229 kb on + strand, within QEN71_RS30575 at 197.229 kb on + strand, within QEN71_RS30575 at 197.229 kb on + strand, within QEN71_RS30575 at 197.230 kb on - strand, within QEN71_RS30575 at 197.230 kb on - strand, within QEN71_RS30575 at 197.319 kb on + strand, within QEN71_RS30575 at 197.319 kb on + strand, within QEN71_RS30575 at 197.319 kb on + strand, within QEN71_RS30575 at 197.319 kb on + strand, within QEN71_RS30575 at 197.396 kb on - strand, within QEN71_RS30575 at 197.449 kb on + strand, within QEN71_RS30575 at 197.449 kb on + strand, within QEN71_RS30575 at 197.449 kb on + strand, within QEN71_RS30575 at 197.449 kb on + strand, within QEN71_RS30575 at 197.449 kb on + strand, within QEN71_RS30575 at 197.450 kb on - strand, within QEN71_RS30575 at 197.514 kb on + strand, within QEN71_RS30575 at 197.514 kb on + strand, within QEN71_RS30575 at 197.514 kb on + strand, within QEN71_RS30575 at 197.515 kb on - strand, within QEN71_RS30575
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT71_in_LB remove 195,194 - QEN71_RS30555 0.69 +0.4 195,226 + QEN71_RS30555 0.73 -0.4 195,227 - QEN71_RS30555 0.73 -0.0 195,274 + QEN71_RS30555 0.78 -0.1 195,274 + QEN71_RS30555 0.78 -0.2 195,274 + QEN71_RS30555 0.78 -0.4 195,642 - QEN71_RS30560 0.41 +1.4 195,648 - QEN71_RS30560 0.43 -0.8 195,714 + QEN71_RS30560 0.60 -0.1 195,757 + QEN71_RS30560 0.71 -0.1 195,757 + QEN71_RS30560 0.71 +0.8 195,864 - -1.0 195,864 - +0.3 195,864 - +0.6 195,864 - -0.8 195,864 - -0.9 195,868 - +0.1 195,894 - -0.1 195,908 - +0.4 195,927 + -0.1 195,928 - -0.0 195,928 - +0.3 195,988 + -0.7 196,103 + QEN71_RS30565 0.23 +1.2 196,103 + QEN71_RS30565 0.23 -1.2 196,104 - QEN71_RS30565 0.24 -0.4 196,104 - QEN71_RS30565 0.24 +1.5 196,127 + QEN71_RS30565 0.28 +2.3 196,735 + QEN71_RS30570 0.64 -0.5 196,735 + QEN71_RS30570 0.64 +0.3 196,735 + QEN71_RS30570 0.64 -0.1 196,736 - QEN71_RS30570 0.65 +0.7 197,198 - QEN71_RS30575 0.13 -0.0 197,229 + QEN71_RS30575 0.17 -0.9 197,229 + QEN71_RS30575 0.17 +0.5 197,229 + QEN71_RS30575 0.17 -0.3 197,229 + QEN71_RS30575 0.17 -0.3 197,229 + QEN71_RS30575 0.17 -0.7 197,230 - QEN71_RS30575 0.17 -0.6 197,230 - QEN71_RS30575 0.17 -0.5 197,319 + QEN71_RS30575 0.31 -0.5 197,319 + QEN71_RS30575 0.31 +0.3 197,319 + QEN71_RS30575 0.31 -0.2 197,319 + QEN71_RS30575 0.31 +0.1 197,396 - QEN71_RS30575 0.42 +0.1 197,449 + QEN71_RS30575 0.50 +0.4 197,449 + QEN71_RS30575 0.50 -0.2 197,449 + QEN71_RS30575 0.50 +0.1 197,449 + QEN71_RS30575 0.50 +1.1 197,449 + QEN71_RS30575 0.50 +0.1 197,450 - QEN71_RS30575 0.50 -0.7 197,514 + QEN71_RS30575 0.59 -0.3 197,514 + QEN71_RS30575 0.59 +0.1 197,514 + QEN71_RS30575 0.59 -0.2 197,515 - QEN71_RS30575 0.59 -0.3
Or see this region's nucleotide sequence