Experiment: Filtered_supernatant_MT71_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29845 and QEN71_RS29850 overlap by 4 nucleotides QEN71_RS29850 and QEN71_RS29855 are separated by 24 nucleotides
QEN71_RS29845: QEN71_RS29845 - efflux RND transporter permease subunit, at 36,081 to 39,173
_RS29845
QEN71_RS29850: QEN71_RS29850 - efflux RND transporter permease subunit, at 39,170 to 42,283
_RS29850
QEN71_RS29855: QEN71_RS29855 - efflux RND transporter periplasmic adaptor subunit, at 42,308 to 43,453
_RS29855
Position (kb) 39
40
41
42
43 Strain fitness (log2 ratio) -2
-1
0
1 at 38.452 kb on + strand, within QEN71_RS29845 at 38.453 kb on - strand, within QEN71_RS29845 at 38.494 kb on + strand, within QEN71_RS29845 at 38.495 kb on - strand, within QEN71_RS29845 at 38.558 kb on + strand, within QEN71_RS29845 at 38.584 kb on + strand, within QEN71_RS29845 at 38.710 kb on + strand, within QEN71_RS29845 at 38.710 kb on + strand, within QEN71_RS29845 at 38.710 kb on + strand, within QEN71_RS29845 at 38.710 kb on + strand, within QEN71_RS29845 at 38.711 kb on - strand, within QEN71_RS29845 at 38.711 kb on - strand, within QEN71_RS29845 at 38.748 kb on + strand, within QEN71_RS29845 at 38.748 kb on + strand, within QEN71_RS29845 at 38.748 kb on + strand, within QEN71_RS29845 at 38.788 kb on + strand, within QEN71_RS29845 at 38.788 kb on + strand, within QEN71_RS29845 at 39.002 kb on + strand at 39.126 kb on + strand at 39.639 kb on + strand, within QEN71_RS29850 at 39.926 kb on - strand, within QEN71_RS29850 at 39.926 kb on - strand, within QEN71_RS29850 at 39.975 kb on + strand, within QEN71_RS29850 at 39.975 kb on + strand, within QEN71_RS29850 at 39.975 kb on + strand, within QEN71_RS29850 at 39.975 kb on + strand, within QEN71_RS29850 at 39.975 kb on + strand, within QEN71_RS29850 at 39.975 kb on + strand, within QEN71_RS29850 at 39.976 kb on - strand, within QEN71_RS29850 at 40.044 kb on + strand, within QEN71_RS29850 at 40.060 kb on + strand, within QEN71_RS29850 at 40.062 kb on + strand, within QEN71_RS29850 at 40.062 kb on + strand, within QEN71_RS29850 at 40.062 kb on + strand, within QEN71_RS29850 at 40.063 kb on - strand, within QEN71_RS29850 at 40.063 kb on - strand, within QEN71_RS29850 at 40.063 kb on - strand, within QEN71_RS29850 at 40.063 kb on - strand, within QEN71_RS29850 at 40.063 kb on - strand, within QEN71_RS29850 at 40.099 kb on - strand, within QEN71_RS29850 at 40.099 kb on - strand, within QEN71_RS29850 at 40.299 kb on + strand, within QEN71_RS29850 at 40.354 kb on - strand, within QEN71_RS29850 at 41.800 kb on + strand, within QEN71_RS29850 at 41.800 kb on + strand, within QEN71_RS29850 at 41.800 kb on + strand, within QEN71_RS29850 at 41.898 kb on + strand, within QEN71_RS29850 at 42.160 kb on - strand at 42.278 kb on - strand at 42.473 kb on + strand, within QEN71_RS29855 at 42.799 kb on - strand, within QEN71_RS29855 at 42.811 kb on + strand, within QEN71_RS29855 at 42.927 kb on + strand, within QEN71_RS29855 at 43.013 kb on - strand, within QEN71_RS29855 at 43.059 kb on + strand, within QEN71_RS29855 at 43.060 kb on - strand, within QEN71_RS29855
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT71_in_LB remove 38,452 + QEN71_RS29845 0.77 -0.7 38,453 - QEN71_RS29845 0.77 -0.8 38,494 + QEN71_RS29845 0.78 -0.7 38,495 - QEN71_RS29845 0.78 +0.7 38,558 + QEN71_RS29845 0.80 +1.7 38,584 + QEN71_RS29845 0.81 -0.6 38,710 + QEN71_RS29845 0.85 -0.4 38,710 + QEN71_RS29845 0.85 -0.7 38,710 + QEN71_RS29845 0.85 +1.1 38,710 + QEN71_RS29845 0.85 -0.3 38,711 - QEN71_RS29845 0.85 +0.2 38,711 - QEN71_RS29845 0.85 +0.4 38,748 + QEN71_RS29845 0.86 -0.1 38,748 + QEN71_RS29845 0.86 +0.1 38,748 + QEN71_RS29845 0.86 +1.6 38,788 + QEN71_RS29845 0.88 +0.0 38,788 + QEN71_RS29845 0.88 -0.2 39,002 + -1.3 39,126 + +0.4 39,639 + QEN71_RS29850 0.15 +0.1 39,926 - QEN71_RS29850 0.24 -1.1 39,926 - QEN71_RS29850 0.24 -1.0 39,975 + QEN71_RS29850 0.26 -0.9 39,975 + QEN71_RS29850 0.26 -0.9 39,975 + QEN71_RS29850 0.26 -0.7 39,975 + QEN71_RS29850 0.26 +0.5 39,975 + QEN71_RS29850 0.26 -0.8 39,975 + QEN71_RS29850 0.26 -0.5 39,976 - QEN71_RS29850 0.26 -1.2 40,044 + QEN71_RS29850 0.28 -0.7 40,060 + QEN71_RS29850 0.29 -0.5 40,062 + QEN71_RS29850 0.29 -0.5 40,062 + QEN71_RS29850 0.29 +0.3 40,062 + QEN71_RS29850 0.29 +1.1 40,063 - QEN71_RS29850 0.29 -0.7 40,063 - QEN71_RS29850 0.29 +0.5 40,063 - QEN71_RS29850 0.29 -1.0 40,063 - QEN71_RS29850 0.29 -0.6 40,063 - QEN71_RS29850 0.29 +0.9 40,099 - QEN71_RS29850 0.30 -2.3 40,099 - QEN71_RS29850 0.30 +0.7 40,299 + QEN71_RS29850 0.36 -0.5 40,354 - QEN71_RS29850 0.38 -0.2 41,800 + QEN71_RS29850 0.84 -0.9 41,800 + QEN71_RS29850 0.84 -1.5 41,800 + QEN71_RS29850 0.84 -0.2 41,898 + QEN71_RS29850 0.88 -1.3 42,160 - -0.5 42,278 - +0.7 42,473 + QEN71_RS29855 0.14 -0.1 42,799 - QEN71_RS29855 0.43 +0.5 42,811 + QEN71_RS29855 0.44 -0.0 42,927 + QEN71_RS29855 0.54 -0.5 43,013 - QEN71_RS29855 0.62 +0.1 43,059 + QEN71_RS29855 0.66 -0.2 43,060 - QEN71_RS29855 0.66 +0.6
Or see this region's nucleotide sequence