Experiment: Filtered_supernatant_MT71_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS22235 and QEN71_RS22240 are separated by 6 nucleotides QEN71_RS22240 and QEN71_RS22245 are separated by 16 nucleotides QEN71_RS22245 and QEN71_RS22250 are separated by 5 nucleotides
QEN71_RS22235: QEN71_RS22235 - 3'-5' exonuclease, at 4,937,310 to 4,938,086
_RS22235
QEN71_RS22240: QEN71_RS22240 - RNA polymerase sigma factor RpoS, at 4,938,093 to 4,939,187
_RS22240
QEN71_RS22245: QEN71_RS22245 - peptidoglycan DD-metalloendopeptidase family protein, at 4,939,204 to 4,940,151
_RS22245
QEN71_RS22250: QEN71_RS22250 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 4,940,157 to 4,941,215
_RS22250
Position (kb) 4938
4939
4940 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4937.214 kb on + strand at 4937.214 kb on + strand at 4937.219 kb on + strand at 4937.219 kb on + strand at 4937.288 kb on + strand at 4937.315 kb on + strand at 4937.315 kb on + strand at 4937.315 kb on + strand at 4937.315 kb on + strand at 4937.316 kb on - strand at 4937.332 kb on + strand at 4937.332 kb on + strand at 4937.332 kb on + strand at 4937.332 kb on + strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.385 kb on + strand at 4937.385 kb on + strand at 4937.385 kb on + strand at 4937.386 kb on - strand at 4937.386 kb on - strand at 4937.386 kb on - strand at 4937.398 kb on + strand, within QEN71_RS22235 at 4937.398 kb on + strand, within QEN71_RS22235 at 4937.398 kb on + strand, within QEN71_RS22235 at 4937.399 kb on - strand, within QEN71_RS22235 at 4937.399 kb on - strand, within QEN71_RS22235 at 4937.443 kb on + strand, within QEN71_RS22235 at 4937.443 kb on + strand, within QEN71_RS22235 at 4937.443 kb on + strand, within QEN71_RS22235 at 4937.444 kb on - strand, within QEN71_RS22235 at 4937.444 kb on - strand, within QEN71_RS22235 at 4937.444 kb on - strand, within QEN71_RS22235 at 4937.444 kb on - strand, within QEN71_RS22235 at 4937.444 kb on - strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.479 kb on + strand, within QEN71_RS22235 at 4937.479 kb on + strand, within QEN71_RS22235 at 4937.479 kb on + strand, within QEN71_RS22235 at 4937.479 kb on + strand, within QEN71_RS22235 at 4937.480 kb on - strand, within QEN71_RS22235 at 4937.480 kb on - strand, within QEN71_RS22235 at 4937.480 kb on - strand, within QEN71_RS22235 at 4937.483 kb on + strand, within QEN71_RS22235 at 4937.483 kb on + strand, within QEN71_RS22235 at 4937.483 kb on + strand, within QEN71_RS22235 at 4937.483 kb on + strand, within QEN71_RS22235 at 4937.484 kb on - strand, within QEN71_RS22235 at 4937.484 kb on - strand, within QEN71_RS22235 at 4937.523 kb on + strand, within QEN71_RS22235 at 4937.523 kb on + strand, within QEN71_RS22235 at 4937.523 kb on + strand, within QEN71_RS22235 at 4937.523 kb on + strand, within QEN71_RS22235 at 4937.523 kb on + strand, within QEN71_RS22235 at 4937.524 kb on - strand, within QEN71_RS22235 at 4937.524 kb on - strand, within QEN71_RS22235 at 4937.524 kb on - strand, within QEN71_RS22235 at 4937.524 kb on - strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.609 kb on - strand, within QEN71_RS22235 at 4937.609 kb on - strand, within QEN71_RS22235 at 4937.609 kb on - strand, within QEN71_RS22235 at 4937.609 kb on - strand, within QEN71_RS22235 at 4937.609 kb on - strand, within QEN71_RS22235 at 4937.636 kb on + strand, within QEN71_RS22235 at 4937.636 kb on + strand, within QEN71_RS22235 at 4937.651 kb on - strand, within QEN71_RS22235 at 4937.657 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.708 kb on - strand, within QEN71_RS22235 at 4937.729 kb on + strand, within QEN71_RS22235 at 4937.729 kb on + strand, within QEN71_RS22235 at 4937.730 kb on - strand, within QEN71_RS22235 at 4937.744 kb on - strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.801 kb on - strand, within QEN71_RS22235 at 4937.801 kb on - strand, within QEN71_RS22235 at 4938.095 kb on - strand at 4938.114 kb on + strand at 4938.115 kb on - strand at 4938.115 kb on - strand at 4938.115 kb on - strand at 4938.481 kb on + strand, within QEN71_RS22240 at 4938.482 kb on - strand, within QEN71_RS22240 at 4938.482 kb on - strand, within QEN71_RS22240 at 4938.482 kb on - strand, within QEN71_RS22240 at 4938.498 kb on - strand, within QEN71_RS22240 at 4938.498 kb on - strand, within QEN71_RS22240 at 4938.670 kb on + strand, within QEN71_RS22240 at 4938.670 kb on + strand, within QEN71_RS22240 at 4938.670 kb on + strand, within QEN71_RS22240 at 4938.670 kb on + strand, within QEN71_RS22240 at 4938.670 kb on + strand, within QEN71_RS22240 at 4938.671 kb on - strand, within QEN71_RS22240 at 4938.671 kb on - strand, within QEN71_RS22240 at 4938.671 kb on - strand, within QEN71_RS22240 at 4938.868 kb on + strand, within QEN71_RS22240 at 4938.869 kb on - strand, within QEN71_RS22240 at 4938.891 kb on - strand, within QEN71_RS22240 at 4938.891 kb on - strand, within QEN71_RS22240 at 4938.922 kb on + strand, within QEN71_RS22240 at 4938.922 kb on + strand, within QEN71_RS22240 at 4938.922 kb on + strand, within QEN71_RS22240 at 4938.922 kb on + strand, within QEN71_RS22240 at 4938.923 kb on - strand, within QEN71_RS22240 at 4938.923 kb on - strand, within QEN71_RS22240 at 4938.923 kb on - strand, within QEN71_RS22240 at 4938.923 kb on - strand, within QEN71_RS22240 at 4939.193 kb on + strand at 4939.194 kb on - strand at 4939.205 kb on + strand at 4939.206 kb on - strand at 4939.206 kb on - strand at 4940.146 kb on - strand at 4940.146 kb on - strand at 4940.146 kb on - strand at 4940.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT71_in_LB remove 4,937,214 + -0.4 4,937,214 + +0.2 4,937,219 + -1.0 4,937,219 + -0.9 4,937,288 + -0.9 4,937,315 + +0.0 4,937,315 + +0.4 4,937,315 + -1.7 4,937,315 + +0.1 4,937,316 - +1.0 4,937,332 + -2.0 4,937,332 + -1.2 4,937,332 + +1.0 4,937,332 + -0.9 4,937,333 - +1.2 4,937,333 - -0.0 4,937,333 - -0.6 4,937,333 - +0.2 4,937,333 - -0.7 4,937,333 - -0.2 4,937,333 - -0.2 4,937,333 - +2.0 4,937,385 + -1.1 4,937,385 + -1.1 4,937,385 + -0.3 4,937,386 - -0.7 4,937,386 - -0.4 4,937,386 - -0.2 4,937,398 + QEN71_RS22235 0.11 +0.4 4,937,398 + QEN71_RS22235 0.11 -1.0 4,937,398 + QEN71_RS22235 0.11 -0.1 4,937,399 - QEN71_RS22235 0.11 -0.0 4,937,399 - QEN71_RS22235 0.11 -0.4 4,937,443 + QEN71_RS22235 0.17 -0.1 4,937,443 + QEN71_RS22235 0.17 -0.1 4,937,443 + QEN71_RS22235 0.17 -0.9 4,937,444 - QEN71_RS22235 0.17 -0.9 4,937,444 - QEN71_RS22235 0.17 -2.7 4,937,444 - QEN71_RS22235 0.17 -0.6 4,937,444 - QEN71_RS22235 0.17 -1.5 4,937,444 - QEN71_RS22235 0.17 +1.4 4,937,452 + QEN71_RS22235 0.18 -0.6 4,937,452 + QEN71_RS22235 0.18 +0.0 4,937,452 + QEN71_RS22235 0.18 +0.0 4,937,452 + QEN71_RS22235 0.18 -1.8 4,937,452 + QEN71_RS22235 0.18 -0.7 4,937,452 + QEN71_RS22235 0.18 -0.3 4,937,452 + QEN71_RS22235 0.18 -0.7 4,937,452 + QEN71_RS22235 0.18 +1.1 4,937,452 + QEN71_RS22235 0.18 -0.0 4,937,453 - QEN71_RS22235 0.18 -1.3 4,937,453 - QEN71_RS22235 0.18 -0.0 4,937,453 - QEN71_RS22235 0.18 -1.5 4,937,453 - QEN71_RS22235 0.18 -0.5 4,937,453 - QEN71_RS22235 0.18 -0.2 4,937,453 - QEN71_RS22235 0.18 -1.5 4,937,453 - QEN71_RS22235 0.18 +1.0 4,937,453 - QEN71_RS22235 0.18 +0.1 4,937,453 - QEN71_RS22235 0.18 -1.5 4,937,453 - QEN71_RS22235 0.18 -0.4 4,937,453 - QEN71_RS22235 0.18 +0.4 4,937,453 - QEN71_RS22235 0.18 -1.2 4,937,453 - QEN71_RS22235 0.18 -0.8 4,937,453 - QEN71_RS22235 0.18 -0.9 4,937,453 - QEN71_RS22235 0.18 -0.3 4,937,453 - QEN71_RS22235 0.18 -1.2 4,937,453 - QEN71_RS22235 0.18 -1.2 4,937,456 + QEN71_RS22235 0.19 -0.6 4,937,456 + QEN71_RS22235 0.19 -1.0 4,937,456 + QEN71_RS22235 0.19 -1.1 4,937,456 + QEN71_RS22235 0.19 +1.3 4,937,456 + QEN71_RS22235 0.19 -1.0 4,937,456 + QEN71_RS22235 0.19 -1.2 4,937,456 + QEN71_RS22235 0.19 +1.4 4,937,456 + QEN71_RS22235 0.19 +2.0 4,937,456 + QEN71_RS22235 0.19 +0.5 4,937,456 + QEN71_RS22235 0.19 +0.1 4,937,456 + QEN71_RS22235 0.19 -1.3 4,937,456 + QEN71_RS22235 0.19 -0.3 4,937,457 - QEN71_RS22235 0.19 -0.0 4,937,457 - QEN71_RS22235 0.19 +0.8 4,937,457 - QEN71_RS22235 0.19 -0.1 4,937,457 - QEN71_RS22235 0.19 +0.7 4,937,457 - QEN71_RS22235 0.19 -0.1 4,937,457 - QEN71_RS22235 0.19 -1.3 4,937,457 - QEN71_RS22235 0.19 +0.2 4,937,457 - QEN71_RS22235 0.19 +1.0 4,937,479 + QEN71_RS22235 0.22 +0.3 4,937,479 + QEN71_RS22235 0.22 -1.1 4,937,479 + QEN71_RS22235 0.22 -1.0 4,937,479 + QEN71_RS22235 0.22 +0.5 4,937,480 - QEN71_RS22235 0.22 -1.6 4,937,480 - QEN71_RS22235 0.22 -0.0 4,937,480 - QEN71_RS22235 0.22 -1.3 4,937,483 + QEN71_RS22235 0.22 +1.0 4,937,483 + QEN71_RS22235 0.22 -1.0 4,937,483 + QEN71_RS22235 0.22 -0.2 4,937,483 + QEN71_RS22235 0.22 -1.2 4,937,484 - QEN71_RS22235 0.22 -1.1 4,937,484 - QEN71_RS22235 0.22 +0.7 4,937,523 + QEN71_RS22235 0.27 +0.2 4,937,523 + QEN71_RS22235 0.27 +0.0 4,937,523 + QEN71_RS22235 0.27 +1.3 4,937,523 + QEN71_RS22235 0.27 +0.1 4,937,523 + QEN71_RS22235 0.27 -0.2 4,937,524 - QEN71_RS22235 0.28 -0.0 4,937,524 - QEN71_RS22235 0.28 +1.1 4,937,524 - QEN71_RS22235 0.28 -1.4 4,937,524 - QEN71_RS22235 0.28 +0.6 4,937,608 + QEN71_RS22235 0.38 -0.4 4,937,608 + QEN71_RS22235 0.38 +0.8 4,937,608 + QEN71_RS22235 0.38 -0.5 4,937,608 + QEN71_RS22235 0.38 -0.0 4,937,608 + QEN71_RS22235 0.38 -1.0 4,937,608 + QEN71_RS22235 0.38 +0.4 4,937,608 + QEN71_RS22235 0.38 -1.5 4,937,609 - QEN71_RS22235 0.38 -0.9 4,937,609 - QEN71_RS22235 0.38 +1.0 4,937,609 - QEN71_RS22235 0.38 -1.2 4,937,609 - QEN71_RS22235 0.38 -1.1 4,937,609 - QEN71_RS22235 0.38 -1.5 4,937,636 + QEN71_RS22235 0.42 -0.9 4,937,636 + QEN71_RS22235 0.42 +0.8 4,937,651 - QEN71_RS22235 0.44 +0.1 4,937,657 + QEN71_RS22235 0.45 -0.5 4,937,662 + QEN71_RS22235 0.45 -1.2 4,937,662 + QEN71_RS22235 0.45 -0.4 4,937,662 + QEN71_RS22235 0.45 -1.2 4,937,662 + QEN71_RS22235 0.45 -0.9 4,937,662 + QEN71_RS22235 0.45 -0.6 4,937,662 + QEN71_RS22235 0.45 +0.1 4,937,663 - QEN71_RS22235 0.45 +0.6 4,937,663 - QEN71_RS22235 0.45 +0.4 4,937,663 - QEN71_RS22235 0.45 -1.6 4,937,663 - QEN71_RS22235 0.45 +2.0 4,937,663 - QEN71_RS22235 0.45 +0.1 4,937,663 - QEN71_RS22235 0.45 -0.0 4,937,663 - QEN71_RS22235 0.45 -0.5 4,937,708 - QEN71_RS22235 0.51 +1.2 4,937,729 + QEN71_RS22235 0.54 -0.0 4,937,729 + QEN71_RS22235 0.54 +0.5 4,937,730 - QEN71_RS22235 0.54 -0.0 4,937,744 - QEN71_RS22235 0.56 +0.8 4,937,800 + QEN71_RS22235 0.63 -1.3 4,937,800 + QEN71_RS22235 0.63 +0.3 4,937,800 + QEN71_RS22235 0.63 -0.9 4,937,800 + QEN71_RS22235 0.63 -1.2 4,937,800 + QEN71_RS22235 0.63 -1.7 4,937,800 + QEN71_RS22235 0.63 -0.0 4,937,801 - QEN71_RS22235 0.63 -2.0 4,937,801 - QEN71_RS22235 0.63 +0.5 4,938,095 - -0.6 4,938,114 + +0.7 4,938,115 - -0.0 4,938,115 - +1.0 4,938,115 - -0.8 4,938,481 + QEN71_RS22240 0.35 -1.0 4,938,482 - QEN71_RS22240 0.36 +0.2 4,938,482 - QEN71_RS22240 0.36 -0.0 4,938,482 - QEN71_RS22240 0.36 -0.4 4,938,498 - QEN71_RS22240 0.37 -0.6 4,938,498 - QEN71_RS22240 0.37 -0.6 4,938,670 + QEN71_RS22240 0.53 -1.2 4,938,670 + QEN71_RS22240 0.53 +0.6 4,938,670 + QEN71_RS22240 0.53 +0.1 4,938,670 + QEN71_RS22240 0.53 -0.9 4,938,670 + QEN71_RS22240 0.53 +1.1 4,938,671 - QEN71_RS22240 0.53 +0.3 4,938,671 - QEN71_RS22240 0.53 -0.0 4,938,671 - QEN71_RS22240 0.53 -0.0 4,938,868 + QEN71_RS22240 0.71 -0.5 4,938,869 - QEN71_RS22240 0.71 +1.3 4,938,891 - QEN71_RS22240 0.73 +0.1 4,938,891 - QEN71_RS22240 0.73 -0.4 4,938,922 + QEN71_RS22240 0.76 -1.5 4,938,922 + QEN71_RS22240 0.76 +0.1 4,938,922 + QEN71_RS22240 0.76 -0.0 4,938,922 + QEN71_RS22240 0.76 +0.1 4,938,923 - QEN71_RS22240 0.76 -1.0 4,938,923 - QEN71_RS22240 0.76 -0.2 4,938,923 - QEN71_RS22240 0.76 +1.1 4,938,923 - QEN71_RS22240 0.76 -1.8 4,939,193 + -0.4 4,939,194 - +1.5 4,939,205 + -1.0 4,939,206 - +0.1 4,939,206 - -0.3 4,940,146 - +0.6 4,940,146 - -1.1 4,940,146 - -0.0 4,940,146 - -0.4
Or see this region's nucleotide sequence