Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22220

Experiment: Filtered_supernatant_MT71_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS22215 and QEN71_RS22220 are separated by 39 nucleotidesQEN71_RS22220 and QEN71_RS22225 are separated by 105 nucleotides QEN71_RS22215: QEN71_RS22215 - RluA family pseudouridine synthase, at 4,931,960 to 4,933,282 _RS22215 QEN71_RS22220: QEN71_RS22220 - outer membrane protein assembly factor BamD, at 4,933,322 to 4,934,179 _RS22220 QEN71_RS22225: QEN71_RS22225 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 4,934,285 to 4,935,589 _RS22225 Position (kb) 4933 4934 4935Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4933.198 kb on + strandat 4933.198 kb on + strandat 4933.198 kb on + strandat 4933.199 kb on - strandat 4933.199 kb on - strandat 4933.200 kb on + strandat 4933.267 kb on + strandat 4933.304 kb on + strandat 4933.311 kb on + strandat 4933.311 kb on + strandat 4933.311 kb on + strandat 4934.126 kb on + strandat 4934.126 kb on + strandat 4934.126 kb on + strandat 4934.126 kb on + strandat 4934.126 kb on + strandat 4934.127 kb on - strandat 4934.127 kb on - strandat 4934.127 kb on - strandat 4934.259 kb on + strandat 4934.259 kb on + strandat 4934.326 kb on + strandat 4934.326 kb on + strandat 4934.327 kb on - strandat 4934.327 kb on - strandat 4934.327 kb on - strandat 4934.327 kb on - strandat 4934.327 kb on - strandat 4934.327 kb on - strandat 4934.431 kb on - strand, within QEN71_RS22225at 4934.431 kb on - strand, within QEN71_RS22225at 4934.431 kb on - strand, within QEN71_RS22225at 4934.431 kb on - strand, within QEN71_RS22225at 4934.431 kb on - strand, within QEN71_RS22225at 4934.431 kb on - strand, within QEN71_RS22225at 4934.431 kb on - strand, within QEN71_RS22225at 4934.431 kb on - strand, within QEN71_RS22225at 4934.431 kb on - strand, within QEN71_RS22225at 4934.431 kb on - strand, within QEN71_RS22225at 4934.529 kb on + strand, within QEN71_RS22225at 4934.529 kb on + strand, within QEN71_RS22225at 4934.529 kb on + strand, within QEN71_RS22225at 4934.529 kb on + strand, within QEN71_RS22225at 4934.529 kb on + strand, within QEN71_RS22225at 4934.529 kb on + strand, within QEN71_RS22225at 4934.529 kb on + strand, within QEN71_RS22225at 4934.530 kb on - strand, within QEN71_RS22225at 4934.530 kb on - strand, within QEN71_RS22225at 4934.530 kb on - strand, within QEN71_RS22225at 4934.530 kb on - strand, within QEN71_RS22225at 4934.530 kb on - strand, within QEN71_RS22225at 4934.530 kb on - strand, within QEN71_RS22225at 4934.530 kb on - strand, within QEN71_RS22225at 4934.530 kb on - strand, within QEN71_RS22225at 4934.530 kb on - strand, within QEN71_RS22225at 4934.530 kb on - strand, within QEN71_RS22225at 4934.871 kb on + strand, within QEN71_RS22225at 4934.871 kb on + strand, within QEN71_RS22225at 4934.872 kb on - strand, within QEN71_RS22225at 4934.872 kb on - strand, within QEN71_RS22225at 4934.895 kb on + strand, within QEN71_RS22225at 4934.895 kb on + strand, within QEN71_RS22225at 4934.896 kb on - strand, within QEN71_RS22225at 4934.904 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.162 kb on + strand, within QEN71_RS22225at 4935.163 kb on - strand, within QEN71_RS22225at 4935.163 kb on - strand, within QEN71_RS22225at 4935.163 kb on - strand, within QEN71_RS22225at 4935.163 kb on - strand, within QEN71_RS22225at 4935.163 kb on - strand, within QEN71_RS22225at 4935.163 kb on - strand, within QEN71_RS22225at 4935.163 kb on - strand, within QEN71_RS22225at 4935.163 kb on - strand, within QEN71_RS22225

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT71_in_LB
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4,933,198 + +0.1
4,933,198 + -0.4
4,933,198 + -0.2
4,933,199 - -0.0
4,933,199 - +0.2
4,933,200 + +0.4
4,933,267 + -0.2
4,933,304 + -0.3
4,933,311 + -0.1
4,933,311 + +0.2
4,933,311 + +0.8
4,934,126 + -1.0
4,934,126 + -0.3
4,934,126 + +1.7
4,934,126 + -0.6
4,934,126 + -1.9
4,934,127 - -0.7
4,934,127 - -0.4
4,934,127 - +0.7
4,934,259 + -1.0
4,934,259 + +1.2
4,934,326 + +0.4
4,934,326 + +1.5
4,934,327 - -0.4
4,934,327 - +0.2
4,934,327 - +0.9
4,934,327 - -0.0
4,934,327 - -1.0
4,934,327 - +0.1
4,934,431 - QEN71_RS22225 0.11 +0.0
4,934,431 - QEN71_RS22225 0.11 +0.5
4,934,431 - QEN71_RS22225 0.11 -0.7
4,934,431 - QEN71_RS22225 0.11 -1.9
4,934,431 - QEN71_RS22225 0.11 +0.6
4,934,431 - QEN71_RS22225 0.11 +0.0
4,934,431 - QEN71_RS22225 0.11 -0.9
4,934,431 - QEN71_RS22225 0.11 -0.0
4,934,431 - QEN71_RS22225 0.11 +0.0
4,934,431 - QEN71_RS22225 0.11 -0.6
4,934,529 + QEN71_RS22225 0.19 +0.4
4,934,529 + QEN71_RS22225 0.19 +0.8
4,934,529 + QEN71_RS22225 0.19 +0.3
4,934,529 + QEN71_RS22225 0.19 +0.9
4,934,529 + QEN71_RS22225 0.19 +1.0
4,934,529 + QEN71_RS22225 0.19 +0.2
4,934,529 + QEN71_RS22225 0.19 +1.0
4,934,530 - QEN71_RS22225 0.19 +0.3
4,934,530 - QEN71_RS22225 0.19 -0.3
4,934,530 - QEN71_RS22225 0.19 +0.1
4,934,530 - QEN71_RS22225 0.19 -2.2
4,934,530 - QEN71_RS22225 0.19 -0.7
4,934,530 - QEN71_RS22225 0.19 -1.5
4,934,530 - QEN71_RS22225 0.19 -1.0
4,934,530 - QEN71_RS22225 0.19 -0.0
4,934,530 - QEN71_RS22225 0.19 +0.7
4,934,530 - QEN71_RS22225 0.19 +1.5
4,934,871 + QEN71_RS22225 0.45 -0.7
4,934,871 + QEN71_RS22225 0.45 -1.2
4,934,872 - QEN71_RS22225 0.45 -1.4
4,934,872 - QEN71_RS22225 0.45 -1.2
4,934,895 + QEN71_RS22225 0.47 +0.5
4,934,895 + QEN71_RS22225 0.47 -2.5
4,934,896 - QEN71_RS22225 0.47 +1.0
4,934,904 + QEN71_RS22225 0.47 +0.7
4,935,162 + QEN71_RS22225 0.67 +2.3
4,935,162 + QEN71_RS22225 0.67 +0.1
4,935,162 + QEN71_RS22225 0.67 -0.2
4,935,162 + QEN71_RS22225 0.67 +0.1
4,935,162 + QEN71_RS22225 0.67 +0.8
4,935,162 + QEN71_RS22225 0.67 +0.5
4,935,162 + QEN71_RS22225 0.67 +0.3
4,935,162 + QEN71_RS22225 0.67 +1.1
4,935,162 + QEN71_RS22225 0.67 -0.4
4,935,162 + QEN71_RS22225 0.67 +0.4
4,935,162 + QEN71_RS22225 0.67 -0.0
4,935,162 + QEN71_RS22225 0.67 +0.6
4,935,163 - QEN71_RS22225 0.67 +0.4
4,935,163 - QEN71_RS22225 0.67 +0.0
4,935,163 - QEN71_RS22225 0.67 -2.9
4,935,163 - QEN71_RS22225 0.67 -3.0
4,935,163 - QEN71_RS22225 0.67 +0.0
4,935,163 - QEN71_RS22225 0.67 +0.5
4,935,163 - QEN71_RS22225 0.67 +0.0
4,935,163 - QEN71_RS22225 0.67 -0.4

Or see this region's nucleotide sequence