Experiment: Filtered_supernatant_MT71_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS05390 and QEN71_RS05395 are separated by 63 nucleotides QEN71_RS05395 and QEN71_RS05400 are separated by 45 nucleotides
QEN71_RS05390: QEN71_RS05390 - NAD(P)-dependent oxidoreductase, at 1,190,700 to 1,192,049
_RS05390
QEN71_RS05395: QEN71_RS05395 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreA, at 1,192,113 to 1,193,423
_RS05395
QEN71_RS05400: QEN71_RS05400 - NCS1 family nucleobase:cation symporter-1, at 1,193,469 to 1,194,974
_RS05400
Position (kb)
1192
1193
1194 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1191.258 kb on + strand, within QEN71_RS05390 at 1191.615 kb on + strand, within QEN71_RS05390 at 1191.918 kb on - strand at 1192.086 kb on + strand at 1192.087 kb on - strand at 1192.124 kb on - strand at 1192.197 kb on + strand at 1192.198 kb on - strand at 1192.198 kb on - strand at 1192.198 kb on - strand at 1192.198 kb on - strand at 1192.320 kb on - strand, within QEN71_RS05395 at 1192.427 kb on - strand, within QEN71_RS05395 at 1192.578 kb on + strand, within QEN71_RS05395 at 1192.579 kb on - strand, within QEN71_RS05395 at 1192.579 kb on - strand, within QEN71_RS05395 at 1192.683 kb on + strand, within QEN71_RS05395 at 1192.683 kb on + strand, within QEN71_RS05395 at 1192.686 kb on - strand, within QEN71_RS05395 at 1192.686 kb on - strand, within QEN71_RS05395 at 1193.040 kb on + strand, within QEN71_RS05395 at 1193.058 kb on - strand, within QEN71_RS05395 at 1193.112 kb on + strand, within QEN71_RS05395 at 1193.113 kb on - strand, within QEN71_RS05395 at 1193.328 kb on + strand at 1193.526 kb on + strand at 1193.526 kb on + strand at 1193.529 kb on - strand at 1193.577 kb on + strand at 1193.625 kb on + strand, within QEN71_RS05400 at 1193.625 kb on + strand, within QEN71_RS05400 at 1193.626 kb on - strand, within QEN71_RS05400 at 1193.689 kb on + strand, within QEN71_RS05400 at 1193.690 kb on - strand, within QEN71_RS05400 at 1193.760 kb on + strand, within QEN71_RS05400 at 1193.844 kb on + strand, within QEN71_RS05400 at 1193.880 kb on + strand, within QEN71_RS05400 at 1193.880 kb on + strand, within QEN71_RS05400 at 1193.880 kb on + strand, within QEN71_RS05400 at 1193.881 kb on - strand, within QEN71_RS05400 at 1193.994 kb on + strand, within QEN71_RS05400 at 1193.995 kb on - strand, within QEN71_RS05400 at 1194.363 kb on + strand, within QEN71_RS05400 at 1194.421 kb on + strand, within QEN71_RS05400
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT71_in_LB remove 1,191,258 + QEN71_RS05390 0.41 +0.9 1,191,615 + QEN71_RS05390 0.68 +0.2 1,191,918 - +0.7 1,192,086 + -0.4 1,192,087 - -0.1 1,192,124 - +1.5 1,192,197 + +0.8 1,192,198 - -0.8 1,192,198 - +1.6 1,192,198 - -0.2 1,192,198 - -0.3 1,192,320 - QEN71_RS05395 0.16 +0.0 1,192,427 - QEN71_RS05395 0.24 +1.8 1,192,578 + QEN71_RS05395 0.35 +0.5 1,192,579 - QEN71_RS05395 0.36 -2.5 1,192,579 - QEN71_RS05395 0.36 -0.9 1,192,683 + QEN71_RS05395 0.43 -0.1 1,192,683 + QEN71_RS05395 0.43 -0.4 1,192,686 - QEN71_RS05395 0.44 +0.4 1,192,686 - QEN71_RS05395 0.44 +2.0 1,193,040 + QEN71_RS05395 0.71 -0.3 1,193,058 - QEN71_RS05395 0.72 -0.2 1,193,112 + QEN71_RS05395 0.76 -1.0 1,193,113 - QEN71_RS05395 0.76 +0.0 1,193,328 + -0.7 1,193,526 + -0.2 1,193,526 + -0.4 1,193,529 - +0.0 1,193,577 + -0.5 1,193,625 + QEN71_RS05400 0.10 -0.3 1,193,625 + QEN71_RS05400 0.10 -0.5 1,193,626 - QEN71_RS05400 0.10 -0.4 1,193,689 + QEN71_RS05400 0.15 -0.3 1,193,690 - QEN71_RS05400 0.15 -0.6 1,193,760 + QEN71_RS05400 0.19 +0.1 1,193,844 + QEN71_RS05400 0.25 +1.9 1,193,880 + QEN71_RS05400 0.27 -1.0 1,193,880 + QEN71_RS05400 0.27 -1.5 1,193,880 + QEN71_RS05400 0.27 -1.6 1,193,881 - QEN71_RS05400 0.27 -1.0 1,193,994 + QEN71_RS05400 0.35 -0.4 1,193,995 - QEN71_RS05400 0.35 -1.2 1,194,363 + QEN71_RS05400 0.59 -1.3 1,194,421 + QEN71_RS05400 0.63 -0.5
Or see this region's nucleotide sequence