Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04156

Experiment: monoculture; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04155 and MIT1002_04156 are separated by 333 nucleotidesMIT1002_04156 and MIT1002_04157 are separated by 366 nucleotidesMIT1002_04157 and MIT1002_04158 overlap by 11 nucleotides MIT1002_04155: MIT1002_04155 - Rhodocoxin reductase, at 20,515 to 22,194 _04155 MIT1002_04156: MIT1002_04156 - hopanoid-associated sugar epimerase, at 22,528 to 25,002 _04156 MIT1002_04157: MIT1002_04157 - hypothetical protein, at 25,369 to 25,809 _04157 MIT1002_04158: MIT1002_04158 - putative secretion ATPase, PEP-CTERM locus subfamily, at 25,799 to 26,770 _04158 Position (kb) 22 23 24 25 26Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 21.555 kb on + strand, within MIT1002_04155at 21.562 kb on - strand, within MIT1002_04155at 21.563 kb on - strand, within MIT1002_04155at 21.598 kb on + strand, within MIT1002_04155at 21.599 kb on - strand, within MIT1002_04155at 21.606 kb on - strand, within MIT1002_04155at 21.606 kb on - strand, within MIT1002_04155at 21.606 kb on - strand, within MIT1002_04155at 21.606 kb on - strand, within MIT1002_04155at 21.770 kb on - strand, within MIT1002_04155at 21.774 kb on + strand, within MIT1002_04155at 21.774 kb on + strand, within MIT1002_04155at 21.837 kb on + strand, within MIT1002_04155at 21.855 kb on + strand, within MIT1002_04155at 21.863 kb on - strand, within MIT1002_04155at 21.863 kb on - strand, within MIT1002_04155at 21.868 kb on - strand, within MIT1002_04155at 21.888 kb on + strand, within MIT1002_04155at 22.025 kb on - strand, within MIT1002_04155at 22.031 kb on + strandat 22.078 kb on + strandat 22.078 kb on + strandat 22.269 kb on + strandat 22.323 kb on + strandat 22.323 kb on + strandat 22.331 kb on - strandat 22.331 kb on - strandat 22.331 kb on - strandat 22.344 kb on + strandat 22.352 kb on - strandat 22.362 kb on - strandat 22.485 kb on + strandat 22.526 kb on - strandat 22.558 kb on + strandat 22.582 kb on + strandat 22.688 kb on + strandat 22.704 kb on - strandat 22.744 kb on + strandat 22.793 kb on + strand, within MIT1002_04156at 22.797 kb on - strand, within MIT1002_04156at 22.867 kb on - strand, within MIT1002_04156at 22.943 kb on + strand, within MIT1002_04156at 22.947 kb on + strand, within MIT1002_04156at 22.965 kb on - strand, within MIT1002_04156at 22.974 kb on + strand, within MIT1002_04156at 22.974 kb on + strand, within MIT1002_04156at 22.974 kb on + strand, within MIT1002_04156at 22.974 kb on + strand, within MIT1002_04156at 22.974 kb on + strand, within MIT1002_04156at 22.974 kb on + strand, within MIT1002_04156at 22.982 kb on - strand, within MIT1002_04156at 22.982 kb on - strand, within MIT1002_04156at 22.982 kb on - strand, within MIT1002_04156at 22.982 kb on - strand, within MIT1002_04156at 22.982 kb on - strand, within MIT1002_04156at 22.982 kb on - strand, within MIT1002_04156at 22.998 kb on - strand, within MIT1002_04156at 23.042 kb on + strand, within MIT1002_04156at 23.050 kb on - strand, within MIT1002_04156at 23.126 kb on + strand, within MIT1002_04156at 23.130 kb on + strand, within MIT1002_04156at 23.190 kb on - strand, within MIT1002_04156at 23.190 kb on - strand, within MIT1002_04156at 23.265 kb on + strand, within MIT1002_04156at 23.266 kb on - strand, within MIT1002_04156at 23.363 kb on - strand, within MIT1002_04156at 23.389 kb on + strand, within MIT1002_04156at 23.402 kb on + strand, within MIT1002_04156at 23.402 kb on - strand, within MIT1002_04156at 23.410 kb on - strand, within MIT1002_04156at 23.410 kb on - strand, within MIT1002_04156at 23.468 kb on + strand, within MIT1002_04156at 23.520 kb on + strand, within MIT1002_04156at 23.520 kb on + strand, within MIT1002_04156at 23.580 kb on - strand, within MIT1002_04156at 23.591 kb on - strand, within MIT1002_04156at 23.668 kb on + strand, within MIT1002_04156at 23.762 kb on + strand, within MIT1002_04156at 23.801 kb on - strand, within MIT1002_04156at 23.809 kb on + strand, within MIT1002_04156at 23.812 kb on + strand, within MIT1002_04156at 23.820 kb on - strand, within MIT1002_04156at 23.890 kb on - strand, within MIT1002_04156at 23.900 kb on - strand, within MIT1002_04156at 23.918 kb on - strand, within MIT1002_04156at 23.944 kb on - strand, within MIT1002_04156at 24.198 kb on + strand, within MIT1002_04156at 24.235 kb on - strand, within MIT1002_04156at 24.265 kb on + strand, within MIT1002_04156at 24.266 kb on + strand, within MIT1002_04156at 24.274 kb on + strand, within MIT1002_04156at 24.282 kb on - strand, within MIT1002_04156at 24.322 kb on - strand, within MIT1002_04156at 24.355 kb on - strand, within MIT1002_04156at 24.409 kb on + strand, within MIT1002_04156at 24.434 kb on + strand, within MIT1002_04156at 24.442 kb on - strand, within MIT1002_04156at 24.442 kb on - strand, within MIT1002_04156at 24.455 kb on + strand, within MIT1002_04156at 24.509 kb on - strand, within MIT1002_04156at 24.584 kb on - strand, within MIT1002_04156at 24.620 kb on - strand, within MIT1002_04156at 24.634 kb on - strand, within MIT1002_04156at 24.659 kb on + strand, within MIT1002_04156at 24.659 kb on + strand, within MIT1002_04156at 24.659 kb on + strand, within MIT1002_04156at 24.659 kb on + strand, within MIT1002_04156at 24.667 kb on - strand, within MIT1002_04156at 24.667 kb on - strand, within MIT1002_04156at 24.768 kb on + strandat 24.783 kb on - strandat 24.783 kb on - strandat 24.788 kb on - strandat 24.788 kb on - strandat 24.889 kb on + strandat 24.902 kb on - strandat 24.912 kb on - strandat 25.041 kb on - strandat 25.079 kb on - strandat 25.090 kb on - strandat 25.123 kb on - strandat 25.161 kb on + strandat 25.179 kb on - strandat 25.247 kb on + strandat 25.288 kb on + strandat 25.312 kb on - strandat 25.316 kb on - strandat 25.327 kb on + strandat 25.354 kb on - strandat 25.575 kb on + strand, within MIT1002_04157at 25.577 kb on - strand, within MIT1002_04157at 25.601 kb on + strand, within MIT1002_04157at 25.601 kb on + strand, within MIT1002_04157at 25.609 kb on - strand, within MIT1002_04157at 25.706 kb on - strand, within MIT1002_04157at 25.874 kb on + strandat 25.874 kb on + strandat 25.882 kb on - strandat 25.882 kb on - strandat 25.882 kb on - strandat 25.903 kb on + strand, within MIT1002_04158at 25.941 kb on - strand, within MIT1002_04158at 25.941 kb on - strand, within MIT1002_04158at 25.985 kb on + strand, within MIT1002_04158at 25.993 kb on - strand, within MIT1002_04158

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6
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21,555 + MIT1002_04155 0.62 -0.9
21,562 - MIT1002_04155 0.62 +2.3
21,563 - MIT1002_04155 0.62 +1.5
21,598 + MIT1002_04155 0.64 +0.2
21,599 - MIT1002_04155 0.65 +0.7
21,606 - MIT1002_04155 0.65 -1.9
21,606 - MIT1002_04155 0.65 -1.8
21,606 - MIT1002_04155 0.65 -0.1
21,606 - MIT1002_04155 0.65 +1.3
21,770 - MIT1002_04155 0.75 -0.0
21,774 + MIT1002_04155 0.75 -1.0
21,774 + MIT1002_04155 0.75 +0.1
21,837 + MIT1002_04155 0.79 -2.0
21,855 + MIT1002_04155 0.80 -1.2
21,863 - MIT1002_04155 0.80 -2.3
21,863 - MIT1002_04155 0.80 +0.8
21,868 - MIT1002_04155 0.81 -1.2
21,888 + MIT1002_04155 0.82 +0.4
22,025 - MIT1002_04155 0.90 +0.5
22,031 + +1.4
22,078 + +0.8
22,078 + -1.3
22,269 + +0.0
22,323 + -0.9
22,323 + +0.1
22,331 - +0.4
22,331 - -1.7
22,331 - -2.0
22,344 + -0.2
22,352 - +0.1
22,362 - -0.4
22,485 + -1.2
22,526 - -1.6
22,558 + -1.3
22,582 + -1.6
22,688 + -0.8
22,704 - +1.4
22,744 + -1.3
22,793 + MIT1002_04156 0.11 +0.8
22,797 - MIT1002_04156 0.11 -0.5
22,867 - MIT1002_04156 0.14 +0.7
22,943 + MIT1002_04156 0.17 -0.8
22,947 + MIT1002_04156 0.17 -0.8
22,965 - MIT1002_04156 0.18 -0.1
22,974 + MIT1002_04156 0.18 +0.1
22,974 + MIT1002_04156 0.18 -1.1
22,974 + MIT1002_04156 0.18 -0.1
22,974 + MIT1002_04156 0.18 +0.7
22,974 + MIT1002_04156 0.18 -1.0
22,974 + MIT1002_04156 0.18 -0.4
22,982 - MIT1002_04156 0.18 -1.9
22,982 - MIT1002_04156 0.18 +1.0
22,982 - MIT1002_04156 0.18 -1.6
22,982 - MIT1002_04156 0.18 -0.7
22,982 - MIT1002_04156 0.18 +0.9
22,982 - MIT1002_04156 0.18 +0.3
22,998 - MIT1002_04156 0.19 -1.5
23,042 + MIT1002_04156 0.21 -0.8
23,050 - MIT1002_04156 0.21 -2.3
23,126 + MIT1002_04156 0.24 +0.2
23,130 + MIT1002_04156 0.24 +0.1
23,190 - MIT1002_04156 0.27 -0.2
23,190 - MIT1002_04156 0.27 -0.8
23,265 + MIT1002_04156 0.30 +1.1
23,266 - MIT1002_04156 0.30 +0.0
23,363 - MIT1002_04156 0.34 -0.0
23,389 + MIT1002_04156 0.35 -0.9
23,402 + MIT1002_04156 0.35 +0.4
23,402 - MIT1002_04156 0.35 -2.7
23,410 - MIT1002_04156 0.36 -0.5
23,410 - MIT1002_04156 0.36 +0.1
23,468 + MIT1002_04156 0.38 +0.5
23,520 + MIT1002_04156 0.40 +1.3
23,520 + MIT1002_04156 0.40 -0.5
23,580 - MIT1002_04156 0.43 -3.2
23,591 - MIT1002_04156 0.43 -3.1
23,668 + MIT1002_04156 0.46 -0.3
23,762 + MIT1002_04156 0.50 -0.6
23,801 - MIT1002_04156 0.51 -0.7
23,809 + MIT1002_04156 0.52 -2.1
23,812 + MIT1002_04156 0.52 -0.7
23,820 - MIT1002_04156 0.52 +0.3
23,890 - MIT1002_04156 0.55 -2.3
23,900 - MIT1002_04156 0.55 +0.8
23,918 - MIT1002_04156 0.56 -1.2
23,944 - MIT1002_04156 0.57 +1.3
24,198 + MIT1002_04156 0.67 +1.1
24,235 - MIT1002_04156 0.69 -1.2
24,265 + MIT1002_04156 0.70 -1.6
24,266 + MIT1002_04156 0.70 -1.5
24,274 + MIT1002_04156 0.71 +0.1
24,282 - MIT1002_04156 0.71 +2.5
24,322 - MIT1002_04156 0.72 -2.3
24,355 - MIT1002_04156 0.74 -0.5
24,409 + MIT1002_04156 0.76 -0.8
24,434 + MIT1002_04156 0.77 +0.4
24,442 - MIT1002_04156 0.77 -1.0
24,442 - MIT1002_04156 0.77 +1.7
24,455 + MIT1002_04156 0.78 +0.3
24,509 - MIT1002_04156 0.80 +0.5
24,584 - MIT1002_04156 0.83 -0.2
24,620 - MIT1002_04156 0.85 +1.3
24,634 - MIT1002_04156 0.85 -0.4
24,659 + MIT1002_04156 0.86 -0.4
24,659 + MIT1002_04156 0.86 +0.2
24,659 + MIT1002_04156 0.86 +0.8
24,659 + MIT1002_04156 0.86 -0.3
24,667 - MIT1002_04156 0.86 -0.9
24,667 - MIT1002_04156 0.86 -0.5
24,768 + -0.9
24,783 - -1.8
24,783 - -0.2
24,788 - +0.5
24,788 - -0.1
24,889 + +2.8
24,902 - +1.5
24,912 - -1.4
25,041 - -2.3
25,079 - +0.1
25,090 - -0.1
25,123 - +0.5
25,161 + -0.6
25,179 - +1.1
25,247 + +1.9
25,288 + -0.5
25,312 - +1.3
25,316 - -1.8
25,327 + -2.2
25,354 - +0.6
25,575 + MIT1002_04157 0.47 +0.8
25,577 - MIT1002_04157 0.47 -1.4
25,601 + MIT1002_04157 0.53 -1.4
25,601 + MIT1002_04157 0.53 -1.3
25,609 - MIT1002_04157 0.54 +2.5
25,706 - MIT1002_04157 0.76 -0.8
25,874 + +0.0
25,874 + -0.5
25,882 - +1.0
25,882 - +0.5
25,882 - -0.0
25,903 + MIT1002_04158 0.11 -1.2
25,941 - MIT1002_04158 0.15 +0.5
25,941 - MIT1002_04158 0.15 -0.7
25,985 + MIT1002_04158 0.19 -0.5
25,993 - MIT1002_04158 0.20 +0.1

Or see this region's nucleotide sequence