Experiment: monoculture; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03987 and MIT1002_03988 are separated by 58 nucleotides MIT1002_03988 and MIT1002_03989 are separated by 231 nucleotides
MIT1002_03987: MIT1002_03987 - hypothetical protein, at 4,473,337 to 4,474,770
_03987
MIT1002_03988: MIT1002_03988 - ribonuclease Z, at 4,474,829 to 4,475,884
_03988
MIT1002_03989: MIT1002_03989 - Succinate semialdehyde dehydrogenase [NAD(P)+] Sad, at 4,476,116 to 4,477,504
_03989
Position (kb) 4474
4475
4476 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4473.848 kb on - strand, within MIT1002_03987 at 4473.925 kb on - strand, within MIT1002_03987 at 4473.972 kb on - strand, within MIT1002_03987 at 4473.996 kb on + strand, within MIT1002_03987 at 4473.996 kb on + strand, within MIT1002_03987 at 4473.996 kb on + strand, within MIT1002_03987 at 4473.996 kb on + strand, within MIT1002_03987 at 4473.996 kb on + strand, within MIT1002_03987 at 4474.004 kb on - strand, within MIT1002_03987 at 4474.004 kb on - strand, within MIT1002_03987 at 4474.024 kb on + strand, within MIT1002_03987 at 4474.126 kb on + strand, within MIT1002_03987 at 4474.126 kb on + strand, within MIT1002_03987 at 4474.128 kb on + strand, within MIT1002_03987 at 4474.164 kb on + strand, within MIT1002_03987 at 4474.171 kb on + strand, within MIT1002_03987 at 4474.179 kb on - strand, within MIT1002_03987 at 4474.181 kb on - strand, within MIT1002_03987 at 4474.250 kb on - strand, within MIT1002_03987 at 4474.342 kb on - strand, within MIT1002_03987 at 4474.344 kb on + strand, within MIT1002_03987 at 4474.344 kb on + strand, within MIT1002_03987 at 4474.344 kb on + strand, within MIT1002_03987 at 4474.344 kb on + strand, within MIT1002_03987 at 4474.344 kb on + strand, within MIT1002_03987 at 4474.344 kb on + strand, within MIT1002_03987 at 4474.352 kb on - strand, within MIT1002_03987 at 4474.352 kb on - strand, within MIT1002_03987 at 4474.352 kb on - strand, within MIT1002_03987 at 4474.352 kb on - strand, within MIT1002_03987 at 4474.352 kb on - strand, within MIT1002_03987 at 4474.352 kb on - strand, within MIT1002_03987 at 4474.352 kb on - strand, within MIT1002_03987 at 4474.352 kb on - strand, within MIT1002_03987 at 4474.352 kb on - strand, within MIT1002_03987 at 4474.352 kb on - strand, within MIT1002_03987 at 4474.458 kb on + strand, within MIT1002_03987 at 4474.479 kb on + strand, within MIT1002_03987 at 4474.541 kb on - strand, within MIT1002_03987 at 4474.541 kb on - strand, within MIT1002_03987 at 4474.541 kb on - strand, within MIT1002_03987 at 4474.590 kb on - strand, within MIT1002_03987 at 4474.595 kb on + strand, within MIT1002_03987 at 4474.605 kb on + strand, within MIT1002_03987 at 4474.611 kb on + strand, within MIT1002_03987 at 4474.624 kb on - strand, within MIT1002_03987 at 4474.629 kb on - strand at 4474.639 kb on - strand at 4474.649 kb on - strand at 4474.714 kb on - strand at 4474.762 kb on - strand at 4474.765 kb on + strand at 4474.765 kb on + strand at 4474.793 kb on - strand at 4474.800 kb on - strand at 4474.800 kb on - strand at 4474.836 kb on + strand at 4474.846 kb on + strand at 4474.846 kb on - strand at 4474.909 kb on + strand at 4474.971 kb on + strand, within MIT1002_03988 at 4474.971 kb on + strand, within MIT1002_03988 at 4474.971 kb on + strand, within MIT1002_03988 at 4475.029 kb on - strand, within MIT1002_03988 at 4475.030 kb on + strand, within MIT1002_03988 at 4475.030 kb on + strand, within MIT1002_03988 at 4475.055 kb on - strand, within MIT1002_03988 at 4475.060 kb on + strand, within MIT1002_03988 at 4475.110 kb on - strand, within MIT1002_03988 at 4475.148 kb on + strand, within MIT1002_03988 at 4475.161 kb on - strand, within MIT1002_03988 at 4475.162 kb on - strand, within MIT1002_03988 at 4475.174 kb on + strand, within MIT1002_03988 at 4475.187 kb on - strand, within MIT1002_03988 at 4475.219 kb on - strand, within MIT1002_03988 at 4475.230 kb on - strand, within MIT1002_03988 at 4475.302 kb on + strand, within MIT1002_03988 at 4475.302 kb on + strand, within MIT1002_03988 at 4475.310 kb on - strand, within MIT1002_03988 at 4475.361 kb on + strand, within MIT1002_03988 at 4475.361 kb on + strand, within MIT1002_03988 at 4475.380 kb on + strand, within MIT1002_03988 at 4475.388 kb on - strand, within MIT1002_03988 at 4475.388 kb on - strand, within MIT1002_03988 at 4475.388 kb on - strand, within MIT1002_03988 at 4475.388 kb on - strand, within MIT1002_03988 at 4475.388 kb on - strand, within MIT1002_03988 at 4475.611 kb on + strand, within MIT1002_03988 at 4475.678 kb on - strand, within MIT1002_03988 at 4475.681 kb on + strand, within MIT1002_03988 at 4475.701 kb on + strand, within MIT1002_03988 at 4475.709 kb on - strand, within MIT1002_03988 at 4475.764 kb on + strand, within MIT1002_03988 at 4475.811 kb on - strand at 4475.905 kb on - strand at 4475.922 kb on - strand at 4475.967 kb on - strand at 4476.033 kb on + strand at 4476.111 kb on + strand at 4476.119 kb on - strand at 4476.173 kb on + strand at 4476.180 kb on + strand at 4476.188 kb on - strand at 4476.195 kb on - strand at 4476.195 kb on - strand at 4476.238 kb on - strand at 4476.251 kb on - strand at 4476.316 kb on - strand, within MIT1002_03989 at 4476.318 kb on + strand, within MIT1002_03989 at 4476.326 kb on - strand, within MIT1002_03989 at 4476.326 kb on - strand, within MIT1002_03989 at 4476.341 kb on + strand, within MIT1002_03989 at 4476.411 kb on + strand, within MIT1002_03989 at 4476.683 kb on + strand, within MIT1002_03989 at 4476.724 kb on - strand, within MIT1002_03989 at 4476.790 kb on - strand, within MIT1002_03989 at 4476.810 kb on - strand, within MIT1002_03989 at 4476.825 kb on - strand, within MIT1002_03989 at 4476.861 kb on + strand, within MIT1002_03989 at 4476.861 kb on + strand, within MIT1002_03989
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6 remove 4,473,848 - MIT1002_03987 0.36 -0.0 4,473,925 - MIT1002_03987 0.41 -0.7 4,473,972 - MIT1002_03987 0.44 +1.2 4,473,996 + MIT1002_03987 0.46 +2.0 4,473,996 + MIT1002_03987 0.46 -0.0 4,473,996 + MIT1002_03987 0.46 -0.5 4,473,996 + MIT1002_03987 0.46 +1.7 4,473,996 + MIT1002_03987 0.46 +1.4 4,474,004 - MIT1002_03987 0.47 -1.0 4,474,004 - MIT1002_03987 0.47 +2.0 4,474,024 + MIT1002_03987 0.48 -0.1 4,474,126 + MIT1002_03987 0.55 -1.2 4,474,126 + MIT1002_03987 0.55 -0.7 4,474,128 + MIT1002_03987 0.55 +1.0 4,474,164 + MIT1002_03987 0.58 -2.6 4,474,171 + MIT1002_03987 0.58 +0.6 4,474,179 - MIT1002_03987 0.59 +2.0 4,474,181 - MIT1002_03987 0.59 -0.2 4,474,250 - MIT1002_03987 0.64 +1.0 4,474,342 - MIT1002_03987 0.70 -2.0 4,474,344 + MIT1002_03987 0.70 -1.8 4,474,344 + MIT1002_03987 0.70 -1.9 4,474,344 + MIT1002_03987 0.70 +0.6 4,474,344 + MIT1002_03987 0.70 +2.9 4,474,344 + MIT1002_03987 0.70 +0.1 4,474,344 + MIT1002_03987 0.70 -2.5 4,474,352 - MIT1002_03987 0.71 -0.3 4,474,352 - MIT1002_03987 0.71 +2.8 4,474,352 - MIT1002_03987 0.71 -0.1 4,474,352 - MIT1002_03987 0.71 -0.3 4,474,352 - MIT1002_03987 0.71 -0.1 4,474,352 - MIT1002_03987 0.71 +0.2 4,474,352 - MIT1002_03987 0.71 +0.2 4,474,352 - MIT1002_03987 0.71 +4.0 4,474,352 - MIT1002_03987 0.71 -1.3 4,474,352 - MIT1002_03987 0.71 +0.7 4,474,458 + MIT1002_03987 0.78 +0.4 4,474,479 + MIT1002_03987 0.80 -0.5 4,474,541 - MIT1002_03987 0.84 +0.6 4,474,541 - MIT1002_03987 0.84 +0.4 4,474,541 - MIT1002_03987 0.84 -1.3 4,474,590 - MIT1002_03987 0.87 +5.3 4,474,595 + MIT1002_03987 0.88 -0.3 4,474,605 + MIT1002_03987 0.88 -0.6 4,474,611 + MIT1002_03987 0.89 +0.4 4,474,624 - MIT1002_03987 0.90 +0.2 4,474,629 - -0.2 4,474,639 - -0.1 4,474,649 - +2.2 4,474,714 - +1.8 4,474,762 - +0.5 4,474,765 + +0.6 4,474,765 + -0.9 4,474,793 - +0.2 4,474,800 - -0.1 4,474,800 - -0.9 4,474,836 + +1.7 4,474,846 + +1.0 4,474,846 - +0.8 4,474,909 + +0.4 4,474,971 + MIT1002_03988 0.13 -0.3 4,474,971 + MIT1002_03988 0.13 -0.7 4,474,971 + MIT1002_03988 0.13 +1.8 4,475,029 - MIT1002_03988 0.19 -0.5 4,475,030 + MIT1002_03988 0.19 +1.0 4,475,030 + MIT1002_03988 0.19 +2.0 4,475,055 - MIT1002_03988 0.21 +0.6 4,475,060 + MIT1002_03988 0.22 +0.4 4,475,110 - MIT1002_03988 0.27 -0.1 4,475,148 + MIT1002_03988 0.30 -1.1 4,475,161 - MIT1002_03988 0.31 -2.3 4,475,162 - MIT1002_03988 0.32 -2.4 4,475,174 + MIT1002_03988 0.33 -0.5 4,475,187 - MIT1002_03988 0.34 -1.5 4,475,219 - MIT1002_03988 0.37 +0.5 4,475,230 - MIT1002_03988 0.38 +0.2 4,475,302 + MIT1002_03988 0.45 -1.5 4,475,302 + MIT1002_03988 0.45 +1.3 4,475,310 - MIT1002_03988 0.46 +1.4 4,475,361 + MIT1002_03988 0.50 +0.9 4,475,361 + MIT1002_03988 0.50 +1.4 4,475,380 + MIT1002_03988 0.52 +1.7 4,475,388 - MIT1002_03988 0.53 -0.6 4,475,388 - MIT1002_03988 0.53 -1.2 4,475,388 - MIT1002_03988 0.53 -1.8 4,475,388 - MIT1002_03988 0.53 -1.0 4,475,388 - MIT1002_03988 0.53 +1.2 4,475,611 + MIT1002_03988 0.74 +0.4 4,475,678 - MIT1002_03988 0.80 -0.8 4,475,681 + MIT1002_03988 0.81 -1.2 4,475,701 + MIT1002_03988 0.83 -1.2 4,475,709 - MIT1002_03988 0.83 +0.6 4,475,764 + MIT1002_03988 0.89 -1.6 4,475,811 - +1.0 4,475,905 - -0.1 4,475,922 - +1.3 4,475,967 - -0.9 4,476,033 + +0.8 4,476,111 + -0.4 4,476,119 - -2.2 4,476,173 + +1.4 4,476,180 + +0.5 4,476,188 - -0.9 4,476,195 - -1.1 4,476,195 - -0.6 4,476,238 - -0.7 4,476,251 - +2.1 4,476,316 - MIT1002_03989 0.14 +2.7 4,476,318 + MIT1002_03989 0.15 +0.5 4,476,326 - MIT1002_03989 0.15 -0.9 4,476,326 - MIT1002_03989 0.15 +0.5 4,476,341 + MIT1002_03989 0.16 -0.4 4,476,411 + MIT1002_03989 0.21 +1.0 4,476,683 + MIT1002_03989 0.41 -0.8 4,476,724 - MIT1002_03989 0.44 -0.8 4,476,790 - MIT1002_03989 0.49 -0.2 4,476,810 - MIT1002_03989 0.50 +0.0 4,476,825 - MIT1002_03989 0.51 +2.9 4,476,861 + MIT1002_03989 0.54 -0.2 4,476,861 + MIT1002_03989 0.54 -0.5
Or see this region's nucleotide sequence