Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03631

Experiment: monoculture; Experiment B, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_03629 and MIT1002_03630 are separated by 23 nucleotidesMIT1002_03630 and MIT1002_03631 overlap by 1 nucleotidesMIT1002_03631 and MIT1002_03632 are separated by 172 nucleotidesMIT1002_03632 and MIT1002_03633 are separated by 6 nucleotides MIT1002_03629: MIT1002_03629 - putative ubiquinone biosynthesis protein UbiB, at 4,054,458 to 4,056,086 _03629 MIT1002_03630: MIT1002_03630 - SCP-2 sterol transfer family protein, at 4,056,110 to 4,056,745 _03630 MIT1002_03631: MIT1002_03631 - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE, at 4,056,745 to 4,057,542 _03631 MIT1002_03632: MIT1002_03632 - DNA-3-methyladenine glycosylase I, at 4,057,715 to 4,058,416 _03632 MIT1002_03633: MIT1002_03633 - Oligopeptidase A, at 4,058,423 to 4,060,459 _03633 Position (kb) 4056 4057 4058Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4057.591 kb on - strandat 4057.591 kb on - strandat 4057.591 kb on - strandat 4057.609 kb on + strandat 4057.622 kb on + strandat 4057.640 kb on - strandat 4057.644 kb on + strandat 4057.644 kb on + strandat 4057.684 kb on - strandat 4057.698 kb on + strandat 4057.698 kb on + strandat 4057.706 kb on - strandat 4057.720 kb on - strandat 4057.730 kb on - strandat 4057.730 kb on - strandat 4057.766 kb on - strandat 4057.841 kb on + strand, within MIT1002_03632at 4057.947 kb on - strand, within MIT1002_03632at 4057.991 kb on - strand, within MIT1002_03632at 4058.019 kb on + strand, within MIT1002_03632at 4058.027 kb on - strand, within MIT1002_03632at 4058.105 kb on + strand, within MIT1002_03632at 4058.352 kb on - strandat 4058.352 kb on - strandat 4058.352 kb on - strandat 4058.383 kb on - strandat 4058.408 kb on - strandat 4058.484 kb on - strandat 4058.506 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6
remove
4,057,591 - +0.3
4,057,591 - -0.5
4,057,591 - +1.9
4,057,609 + +0.8
4,057,622 + +2.2
4,057,640 - -1.9
4,057,644 + -1.7
4,057,644 + +1.1
4,057,684 - +1.9
4,057,698 + -0.1
4,057,698 + -3.6
4,057,706 - -0.9
4,057,720 - -0.6
4,057,730 - -1.3
4,057,730 - -1.1
4,057,766 - +0.5
4,057,841 + MIT1002_03632 0.18 -1.9
4,057,947 - MIT1002_03632 0.33 +0.7
4,057,991 - MIT1002_03632 0.39 +1.1
4,058,019 + MIT1002_03632 0.43 +0.3
4,058,027 - MIT1002_03632 0.44 -0.6
4,058,105 + MIT1002_03632 0.56 +0.2
4,058,352 - -2.3
4,058,352 - +1.4
4,058,352 - +1.3
4,058,383 - +1.1
4,058,408 - -2.0
4,058,484 - +0.4
4,058,506 + -0.3

Or see this region's nucleotide sequence