Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03444

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
3,849,481	+				-1.8
3,849,483	+				-0.6
3,849,483	+				-0.9
3,849,483	+				+0.4
3,849,483	+				-2.7
3,849,483	+				-0.1
3,849,484	-				+1.3
3,849,489	-				-0.4
3,849,491	-				-1.8
3,849,491	-				+0.0
3,849,503	+				-2.6
3,849,550	+				+0.1
3,849,560	+				+0.1
3,849,560	+				-1.0
3,849,568	-				+0.7
3,849,608	-				-0.4
3,849,643	+				+0.1
3,849,663	-				+1.9
3,849,664	-				+0.3
3,849,707	+				-2.4
3,849,816	-		MIT1002_03443	0.21	+1.3
3,849,862	-		MIT1002_03443	0.28	+1.4
3,849,866	+		MIT1002_03443	0.29	-1.0
3,849,866	+		MIT1002_03443	0.29	-0.8
3,849,978	-		MIT1002_03443	0.47	-0.3
3,850,001	-		MIT1002_03443	0.50	-0.7
3,850,083	+		MIT1002_03443	0.64	+0.3
3,850,086	+		MIT1002_03443	0.64	+1.3
3,850,089	-		MIT1002_03443	0.65	+0.9
3,850,094	-		MIT1002_03443	0.65	-1.4
3,850,225	-		MIT1002_03443	0.86	-1.7
3,850,253	+				+0.2
3,850,295	-				-1.4
3,850,359	-				-2.2
3,850,412	+				-0.8
3,850,412	+				+0.9
3,850,422	+				-0.9
3,850,430	-				+0.4
3,850,442	+				+0.8
3,850,444	+				-1.6
3,850,593	+				-0.6
3,850,608	+				-0.2
3,850,700	-		MIT1002_03444	0.13	-0.9
3,850,893	-		MIT1002_03444	0.22	-0.4
3,851,019	-		MIT1002_03444	0.28	-0.7
3,851,194	-		MIT1002_03444	0.36	+0.6
3,851,245	-		MIT1002_03444	0.38	+0.3
3,851,265	-		MIT1002_03444	0.39	-0.6
3,851,293	+		MIT1002_03444	0.40	+0.8
3,851,293	+		MIT1002_03444	0.40	-0.0
3,851,293	+		MIT1002_03444	0.40	-0.9
3,851,293	+		MIT1002_03444	0.40	-0.2
3,851,293	+		MIT1002_03444	0.40	+0.7
3,851,293	+		MIT1002_03444	0.40	+1.3
3,851,293	+		MIT1002_03444	0.40	+1.4
3,851,293	+		MIT1002_03444	0.40	-0.3
3,851,293	+		MIT1002_03444	0.40	-0.2
3,851,293	+		MIT1002_03444	0.40	-0.2
3,851,293	+		MIT1002_03444	0.40	-0.7
3,851,301	-		MIT1002_03444	0.41	-0.3
3,851,301	-		MIT1002_03444	0.41	-0.7
3,851,301	-		MIT1002_03444	0.41	+1.1
3,851,301	-		MIT1002_03444	0.41	-2.1
3,851,301	-		MIT1002_03444	0.41	+2.2
3,851,301	-		MIT1002_03444	0.41	+1.2
3,851,301	-		MIT1002_03444	0.41	-0.1
3,851,301	-		MIT1002_03444	0.41	-0.3
3,851,301	-		MIT1002_03444	0.41	+3.3
3,851,301	-		MIT1002_03444	0.41	-0.1
3,851,301	-		MIT1002_03444	0.41	+0.1
3,851,313	+		MIT1002_03444	0.41	+0.3
3,851,316	-		MIT1002_03444	0.41	+2.9
3,851,365	+		MIT1002_03444	0.44	-0.1
3,851,370	+		MIT1002_03444	0.44	+0.1
3,851,437	+		MIT1002_03444	0.47	-0.3
3,851,447	+		MIT1002_03444	0.47	+1.0
3,851,455	-		MIT1002_03444	0.48	+1.4
3,851,455	-		MIT1002_03444	0.48	-0.2
3,851,455	-		MIT1002_03444	0.48	-1.5
3,851,505	+		MIT1002_03444	0.50	+0.4
3,851,505	+		MIT1002_03444	0.50	-0.6
3,851,505	+		MIT1002_03444	0.50	+1.9
3,851,513	-		MIT1002_03444	0.51	-0.4
3,851,513	-		MIT1002_03444	0.51	+2.6
3,851,513	-		MIT1002_03444	0.51	-0.9
3,851,515	+		MIT1002_03444	0.51	+0.7
3,851,515	+		MIT1002_03444	0.51	+0.9
3,851,523	-		MIT1002_03444	0.51	-0.9
3,851,523	-		MIT1002_03444	0.51	+1.4
3,851,523	-		MIT1002_03444	0.51	+2.1
3,851,524	-		MIT1002_03444	0.51	+1.1
3,851,580	-		MIT1002_03444	0.54	-1.4
3,851,629	+		MIT1002_03444	0.56	+1.7
3,851,641	+		MIT1002_03444	0.56	-0.2
3,851,837	+		MIT1002_03444	0.65	-0.0
3,851,868	-		MIT1002_03444	0.67	-1.5
3,851,898	-		MIT1002_03444	0.68	+1.7
3,852,002	+		MIT1002_03444	0.73	-0.8
3,852,012	+		MIT1002_03444	0.73	+0.6
3,852,012	+		MIT1002_03444	0.73	+1.7
3,852,012	+		MIT1002_03444	0.73	+2.0
3,852,012	+		MIT1002_03444	0.73	+1.1
3,852,015	-		MIT1002_03444	0.73	-0.0
3,852,020	-		MIT1002_03444	0.74	+0.3
3,852,020	-		MIT1002_03444	0.74	-2.1
3,852,030	-		MIT1002_03444	0.74	+0.0
3,852,046	-		MIT1002_03444	0.75	-0.4
3,852,057	-		MIT1002_03444	0.75	-0.7
3,852,148	+		MIT1002_03444	0.80	+1.7
3,852,170	+		MIT1002_03444	0.81	+0.8
3,852,191	+		MIT1002_03444	0.82	-0.1
3,852,201	-		MIT1002_03444	0.82	-0.4
3,852,210	+		MIT1002_03444	0.82	-0.2
3,852,232	-		MIT1002_03444	0.83	+1.0
3,852,242	-		MIT1002_03444	0.84	-1.0
3,852,296	+		MIT1002_03444	0.86	-1.9
3,852,302	-		MIT1002_03444	0.87	+0.8
3,852,303	+		MIT1002_03444	0.87	+3.7
3,852,304	-		MIT1002_03444	0.87	+0.6
3,852,309	-		MIT1002_03444	0.87	-0.7
3,852,331	-		MIT1002_03444	0.88	+0.5
3,852,349	-		MIT1002_03444	0.89	+0.2
3,852,349	-		MIT1002_03444	0.89	+0.2
3,852,368	-		MIT1002_03444	0.90	-1.1
3,852,409	+				+0.5
3,852,452	+				-1.9
3,852,462	+				-0.5
3,852,462	+				+1.2
3,852,462	+				+0.3
3,852,470	-				-0.6
3,852,470	-				-0.6
3,852,606	-				-0.1
3,852,606	-				-0.3
3,852,628	+				-1.4
3,852,682	+				-2.1
3,852,744	-				-0.1
3,852,768	+				+3.1
3,852,847	-				-0.4
3,852,854	+				+0.9
3,852,871	+		MIT1002_03445	0.11	-0.0
3,852,969	+		MIT1002_03445	0.37	-1.0
3,852,977	-		MIT1002_03445	0.39	-0.7
3,853,005	-		MIT1002_03445	0.47	-1.7
3,853,030	+		MIT1002_03445	0.53	+0.9
3,853,032	-		MIT1002_03445	0.54	+1.1
3,853,057	-		MIT1002_03445	0.61	+0.3
3,853,089	+		MIT1002_03445	0.69	-1.4
3,853,097	-		MIT1002_03445	0.71	-1.5
3,853,132	-		MIT1002_03445	0.81	-0.5
3,853,134	-		MIT1002_03445	0.81	-0.9
3,853,248	+				-1.1
3,853,248	-				+0.3
3,853,250	+				+0.0
3,853,268	+				+0.7
3,853,270	-				-2.5
3,853,276	-				-1.1
3,853,280	+				+0.2
3,853,286	-		MIT1002_03446	0.11	-0.8
3,853,382	+		MIT1002_03446	0.26	+1.6
3,853,409	-		MIT1002_03446	0.30	-1.9
3,853,511	-		MIT1002_03446	0.46	-0.5
3,853,539	-		MIT1002_03446	0.50	-1.0
3,853,566	+		MIT1002_03446	0.54	-1.8
3,853,566	+		MIT1002_03446	0.54	+1.0