Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03171

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
3,532,821	+		MIT1002_03170	0.25	+0.7
3,532,823	+		MIT1002_03170	0.25	-0.8
3,532,829	-		MIT1002_03170	0.25	+0.1
3,532,829	-		MIT1002_03170	0.25	-0.5
3,532,829	-		MIT1002_03170	0.25	-1.0
3,532,842	+		MIT1002_03170	0.26	+0.2
3,532,852	-		MIT1002_03170	0.27	-0.5
3,532,852	-		MIT1002_03170	0.27	+2.2
3,532,859	+		MIT1002_03170	0.28	-0.1
3,532,859	+		MIT1002_03170	0.28	+0.7
3,532,867	-		MIT1002_03170	0.28	+0.4
3,532,867	-		MIT1002_03170	0.28	-0.1
3,532,867	-		MIT1002_03170	0.28	+0.8
3,532,867	-		MIT1002_03170	0.28	-1.2
3,532,885	-		MIT1002_03170	0.30	-0.4
3,532,937	+		MIT1002_03170	0.34	-1.2
3,532,942	+		MIT1002_03170	0.34	-1.1
3,532,942	+		MIT1002_03170	0.34	+2.4
3,532,950	+		MIT1002_03170	0.35	+0.7
3,532,988	+		MIT1002_03170	0.38	+0.0
3,533,029	+		MIT1002_03170	0.41	+0.6
3,533,051	-		MIT1002_03170	0.43	-1.2
3,533,180	+		MIT1002_03170	0.54	-1.7
3,533,182	-		MIT1002_03170	0.54	-0.6
3,533,233	+		MIT1002_03170	0.58	-0.2
3,533,233	+		MIT1002_03170	0.58	-0.1
3,533,233	+		MIT1002_03170	0.58	+0.0
3,533,233	-		MIT1002_03170	0.58	+0.1
3,533,241	-		MIT1002_03170	0.59	+0.8
3,533,287	-		MIT1002_03170	0.62	+0.1
3,533,302	+		MIT1002_03170	0.64	-0.7
3,533,303	-		MIT1002_03170	0.64	-0.1
3,533,339	-		MIT1002_03170	0.67	+1.0
3,533,416	+		MIT1002_03170	0.73	-1.4
3,533,416	+		MIT1002_03170	0.73	+0.3
3,533,468	+		MIT1002_03170	0.77	-0.4
3,533,473	+		MIT1002_03170	0.77	-0.8
3,533,476	-		MIT1002_03170	0.78	-1.4
3,533,486	-		MIT1002_03170	0.78	+1.2
3,533,486	-		MIT1002_03170	0.78	-0.3
3,533,488	+		MIT1002_03170	0.79	+0.1
3,533,488	+		MIT1002_03170	0.79	+0.4
3,533,496	-		MIT1002_03170	0.79	-1.9
3,533,602	-		MIT1002_03170	0.88	-0.2
3,533,667	+				+0.6
3,533,702	+				-1.6
3,533,723	+				+0.3
3,533,789	+				+3.8
3,533,789	+				+0.2
3,533,789	+				-0.5
3,533,789	+				-0.1
3,533,797	-				+0.1
3,533,797	-				+1.0
3,533,839	-				-1.5
3,533,841	+				-1.8
3,533,927	-		MIT1002_03171	0.16	+1.0
3,533,976	+		MIT1002_03171	0.23	-2.2
3,534,007	-		MIT1002_03171	0.27	+0.2
3,534,092	+		MIT1002_03171	0.38	-0.2
3,534,092	+		MIT1002_03171	0.38	+0.7
3,534,102	+		MIT1002_03171	0.40	-1.6
3,534,149	+		MIT1002_03171	0.46	+2.1
3,534,173	-		MIT1002_03171	0.49	+0.1
3,534,202	+		MIT1002_03171	0.53	-1.3
3,534,224	-		MIT1002_03171	0.56	-1.0
3,534,268	+		MIT1002_03171	0.62	-1.0
3,534,273	+		MIT1002_03171	0.63	-0.3
3,534,304	-		MIT1002_03171	0.67	-0.3
3,534,404	+		MIT1002_03171	0.81	-1.1
3,534,463	+		MIT1002_03171	0.89	-0.6
3,534,623	-				-0.7
3,534,644	-				-0.4
3,534,644	-				-1.2
3,534,644	-				+0.1
3,534,668	+				-1.5
3,534,681	-				+0.7
3,534,684	-				-0.6
3,534,692	+				+0.3
3,534,722	+				+1.8
3,534,730	-				-2.0
3,534,730	-				+0.2
3,534,751	-				-1.5
3,534,782	+				+0.6
3,534,786	-				+0.4
3,534,841	-		MIT1002_03172	0.13	+0.3
3,534,955	+		MIT1002_03172	0.20	-0.6
3,534,955	+		MIT1002_03172	0.20	+0.3
3,534,958	-		MIT1002_03172	0.20	-1.2
3,534,982	-		MIT1002_03172	0.21	-1.7
3,535,072	+		MIT1002_03172	0.27	-0.1
3,535,080	-		MIT1002_03172	0.27	-0.8
3,535,080	-		MIT1002_03172	0.27	+0.2
3,535,080	-		MIT1002_03172	0.27	-0.5
3,535,082	+		MIT1002_03172	0.27	+1.0
3,535,129	+		MIT1002_03172	0.30	-1.0
3,535,129	+		MIT1002_03172	0.30	+1.9
3,535,137	-		MIT1002_03172	0.31	-0.0
3,535,337	-		MIT1002_03172	0.42	-3.4
3,535,395	+		MIT1002_03172	0.46	-0.5
3,535,404	+		MIT1002_03172	0.46	+1.3
3,535,429	-		MIT1002_03172	0.48	-2.6
3,535,476	-		MIT1002_03172	0.51	-1.3
3,535,504	-		MIT1002_03172	0.52	-0.1