Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02850

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
3,161,785	-				-0.2
3,161,802	+				-1.3
3,161,995	+		MIT1002_02849	0.29	-1.0
3,161,995	+		MIT1002_02849	0.29	-1.0
3,162,044	+		MIT1002_02849	0.34	-0.7
3,162,081	+		MIT1002_02849	0.39	+0.8
3,162,088	+		MIT1002_02849	0.40	-0.4
3,162,093	+		MIT1002_02849	0.40	-0.4
3,162,093	+		MIT1002_02849	0.40	+0.0
3,162,093	+		MIT1002_02849	0.40	+2.4
3,162,096	-		MIT1002_02849	0.40	-0.6
3,162,096	-		MIT1002_02849	0.40	+0.5
3,162,101	-		MIT1002_02849	0.41	+0.8
3,162,101	-		MIT1002_02849	0.41	+2.8
3,162,116	+		MIT1002_02849	0.43	-1.3
3,162,151	+		MIT1002_02849	0.47	-1.3
3,162,156	+		MIT1002_02849	0.47	+1.4
3,162,159	-		MIT1002_02849	0.48	-1.5
3,162,167	+		MIT1002_02849	0.49	+2.9
3,162,238	+		MIT1002_02849	0.57	+0.0
3,162,284	+		MIT1002_02849	0.62	-1.4
3,162,320	-		MIT1002_02849	0.67	-0.9
3,162,320	-		MIT1002_02849	0.67	-2.5
3,162,328	+		MIT1002_02849	0.67	+1.9
3,162,360	-		MIT1002_02849	0.71	-0.1
3,162,399	+		MIT1002_02849	0.76	-1.3
3,162,399	+		MIT1002_02849	0.76	+1.5
3,162,425	+		MIT1002_02849	0.79	+1.5
3,162,425	+		MIT1002_02849	0.79	-2.6
3,162,471	+		MIT1002_02849	0.84	-1.4
3,162,494	+		MIT1002_02849	0.87	-1.7
3,162,561	-				+0.4
3,162,566	-				+0.3
3,162,568	-				-0.0
3,164,161	+				-0.8
3,164,161	+				+0.2
3,164,187	-				-0.7
3,164,252	+				+2.4
3,164,267	+				-1.2
3,164,275	-				-0.0
3,164,275	-				-0.2
3,164,355	-				-0.2
3,164,390	+				-0.7
3,164,402	+				+0.0
3,164,403	-				-0.1
3,164,410	-		MIT1002_02851	0.11	-1.4
3,164,410	-		MIT1002_02851	0.11	+1.4
3,164,410	-		MIT1002_02851	0.11	+1.2
3,164,486	+		MIT1002_02851	0.17	-1.2
3,164,559	+		MIT1002_02851	0.24	-0.5
3,164,561	+		MIT1002_02851	0.24	+0.7
3,164,570	-		MIT1002_02851	0.25	-0.4
3,164,634	-		MIT1002_02851	0.31	+1.3