Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02477

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
2,765,583	-		MIT1002_02475	0.37	-0.2
2,765,600	+		MIT1002_02475	0.40	-0.2
2,765,600	+		MIT1002_02475	0.40	-1.3
2,765,644	+		MIT1002_02475	0.47	-0.7
2,765,644	+		MIT1002_02475	0.47	+0.1
2,765,652	-		MIT1002_02475	0.48	-0.5
2,765,652	-		MIT1002_02475	0.48	+0.4
2,765,656	+		MIT1002_02475	0.48	-0.5
2,765,664	-		MIT1002_02475	0.50	-0.6
2,765,664	-		MIT1002_02475	0.50	-3.0
2,765,666	+		MIT1002_02475	0.50	+1.4
2,765,694	-		MIT1002_02475	0.55	+1.5
2,765,716	+		MIT1002_02475	0.58	-1.0
2,765,716	+		MIT1002_02475	0.58	-2.5
2,765,724	-		MIT1002_02475	0.59	-0.2
2,765,742	+		MIT1002_02475	0.62	-0.2
2,765,742	+		MIT1002_02475	0.62	-0.8
2,765,838	-		MIT1002_02475	0.77	-0.9
2,765,861	+		MIT1002_02475	0.81	-0.7
2,765,900	-		MIT1002_02475	0.87	+1.3
2,765,924	-				-1.2
2,765,926	+				+0.6
2,765,934	-				+0.8
2,765,934	-				+0.2
2,765,936	+				-0.5
2,765,957	+				-2.1
2,766,001	+				-0.2
2,766,001	+				-0.4
2,766,009	-				+1.3
2,766,009	-				-2.5
2,766,015	+				-0.5
2,766,023	-				+1.9
2,766,036	+				-2.0
2,766,036	+				-0.4
2,766,036	+				-0.9
2,766,036	+				+1.0
2,766,036	+				-1.5
2,766,044	-				-0.1
2,766,049	+				+1.5
2,766,071	-				-2.6
2,766,081	+				+0.1
2,766,135	-		MIT1002_02476	0.21	+0.3
2,766,164	+		MIT1002_02476	0.27	-0.0
2,766,172	-		MIT1002_02476	0.29	+0.6
2,766,198	+		MIT1002_02476	0.34	+2.8
2,766,212	+		MIT1002_02476	0.37	+0.6
2,766,220	+		MIT1002_02476	0.39	-0.1
2,766,220	-		MIT1002_02476	0.39	-0.7
2,766,228	-		MIT1002_02476	0.41	-1.4
2,766,234	+		MIT1002_02476	0.42	+2.7
2,766,240	+		MIT1002_02476	0.43	-0.2
2,766,243	-		MIT1002_02476	0.44	+1.0
2,766,286	-		MIT1002_02476	0.53	+1.0
2,766,301	+		MIT1002_02476	0.56	-0.3
2,766,301	+		MIT1002_02476	0.56	-1.2
2,766,301	+		MIT1002_02476	0.56	+0.8
2,766,345	+		MIT1002_02476	0.66	+0.0
2,766,355	+		MIT1002_02476	0.68	-0.0
2,766,414	-		MIT1002_02476	0.81	+0.3
2,766,419	+		MIT1002_02476	0.82	+2.2
2,766,428	-		MIT1002_02476	0.84	-1.8
2,766,434	+		MIT1002_02476	0.85	-0.7
2,766,439	+		MIT1002_02476	0.86	+1.1
2,766,453	+		MIT1002_02476	0.89	-1.1
2,766,458	+				+1.9
2,766,458	-				-1.7
2,766,462	+				-1.0
2,766,488	+				-0.2
2,766,488	+				-0.5
2,766,549	+				-1.0
2,766,554	+				-2.4
2,766,577	-				-1.3
2,766,598	+		MIT1002_02477	0.11	+0.6
2,766,600	+		MIT1002_02477	0.11	+1.3
2,766,608	+		MIT1002_02477	0.12	-1.1
2,766,616	-		MIT1002_02477	0.13	-0.2
2,766,665	+		MIT1002_02477	0.20	+0.2
2,766,673	-		MIT1002_02477	0.21	-0.1
2,766,673	-		MIT1002_02477	0.21	-2.3
2,766,784	-		MIT1002_02477	0.36	-1.4
2,766,795	+		MIT1002_02477	0.37	-0.7
2,766,795	+		MIT1002_02477	0.37	+1.3
2,766,795	+		MIT1002_02477	0.37	+1.6
2,766,795	+		MIT1002_02477	0.37	+0.4
2,766,801	-		MIT1002_02477	0.38	-1.7
2,766,801	-		MIT1002_02477	0.38	+1.9
2,766,803	-		MIT1002_02477	0.38	+0.3
2,766,803	-		MIT1002_02477	0.38	-1.3
2,766,803	-		MIT1002_02477	0.38	-0.9
2,766,811	+		MIT1002_02477	0.39	-2.3
2,766,819	-		MIT1002_02477	0.41	-0.5
2,766,847	-		MIT1002_02477	0.44	+2.8
2,766,857	-		MIT1002_02477	0.46	-0.2
2,766,873	+		MIT1002_02477	0.48	+0.5
2,766,935	-		MIT1002_02477	0.56	-1.5
2,766,935	-		MIT1002_02477	0.56	-1.3
2,766,936	-		MIT1002_02477	0.56	-1.0
2,766,945	-		MIT1002_02477	0.58	-0.9
2,766,994	+		MIT1002_02477	0.64	+0.6
2,767,004	+		MIT1002_02477	0.66	+0.4
2,767,004	+		MIT1002_02477	0.66	-0.6
2,767,081	+		MIT1002_02477	0.76	+0.0
2,767,089	-		MIT1002_02477	0.77	-1.5
2,767,089	-		MIT1002_02477	0.77	+1.0
2,767,150	+		MIT1002_02477	0.85	+0.3
2,767,158	-		MIT1002_02477	0.86	+0.3
2,767,158	-		MIT1002_02477	0.86	-1.9
2,767,158	-		MIT1002_02477	0.86	-1.6
2,767,217	-				+1.8
2,767,219	+				-1.0
2,767,219	+				+0.2
2,767,227	-				+1.0
2,767,232	+				+0.6
2,767,299	-				-0.0
2,767,387	+		MIT1002_02478	0.16	+0.7
2,767,402	+		MIT1002_02478	0.18	+1.3
2,767,402	+		MIT1002_02478	0.18	-0.0
2,767,403	-		MIT1002_02478	0.19	-1.2
2,767,406	+		MIT1002_02478	0.19	+1.7
2,767,406	+		MIT1002_02478	0.19	-1.6
2,767,410	-		MIT1002_02478	0.19	-0.7
2,767,410	-		MIT1002_02478	0.19	+0.5
2,767,459	-		MIT1002_02478	0.26	+0.8
2,767,466	+		MIT1002_02478	0.27	-0.7
2,767,475	+		MIT1002_02478	0.28	-1.3
2,767,475	+		MIT1002_02478	0.28	-0.4
2,767,475	+		MIT1002_02478	0.28	+2.6
2,767,475	+		MIT1002_02478	0.28	+1.3
2,767,475	+		MIT1002_02478	0.28	+0.3
2,767,483	-		MIT1002_02478	0.29	-2.2
2,767,483	-		MIT1002_02478	0.29	-1.1
2,767,511	+		MIT1002_02478	0.33	+1.6
2,767,511	+		MIT1002_02478	0.33	-1.7
2,767,519	-		MIT1002_02478	0.34	+1.3
2,767,529	-		MIT1002_02478	0.35	-0.3
2,767,529	-		MIT1002_02478	0.35	-0.3
2,767,553	+		MIT1002_02478	0.38	+1.5
2,767,555	+		MIT1002_02478	0.38	-0.3
2,767,614	+		MIT1002_02478	0.46	-1.2
2,767,711	-		MIT1002_02478	0.59	-0.2
2,767,755	+		MIT1002_02478	0.65	+1.7
2,767,763	-		MIT1002_02478	0.66	+0.7
2,767,763	-		MIT1002_02478	0.66	+0.6
2,767,808	+		MIT1002_02478	0.72	-2.1
2,767,834	+		MIT1002_02478	0.75	-1.5
2,767,834	+		MIT1002_02478	0.75	-1.2
2,767,878	+		MIT1002_02478	0.81	+1.6
2,767,879	-		MIT1002_02478	0.81	-0.4
2,767,886	-		MIT1002_02478	0.82	-1.8
2,767,928	-		MIT1002_02478	0.87	+3.4
2,767,948	+				-3.1
2,767,951	-				-0.9
2,767,992	-				-0.5
2,767,994	+				+0.1
2,767,997	-				-0.7
2,768,002	+				-0.9
2,768,002	-				-0.4
2,768,002	-				-1.9
2,768,002	-				+3.2
2,768,002	-				+0.4
2,768,002	-				+0.6
2,768,003	-				+0.1
2,768,025	+				+0.4
2,768,025	+				+0.0
2,768,033	-				+2.3
2,768,165	-		MIT1002_02479	0.74	-0.7
2,768,172	+		MIT1002_02479	0.77	-1.4
2,768,252	+		MIT1002_02480	0.18	+1.0