Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02368

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
2,646,397	-				-0.2
2,646,428	-				+1.4
2,646,428	-				+0.0
2,646,502	+				+2.2
2,646,603	+				+0.5
2,646,622	+		MIT1002_02366	0.15	+0.4
2,646,634	-		MIT1002_02366	0.20	+0.3
2,646,811	-				+0.6
2,646,817	+				+0.6
2,646,825	-				+0.0
2,646,825	-				+0.8
2,646,895	+				-2.2
2,646,916	+				+1.2
2,646,942	+				+0.3
2,646,972	-				+0.2
2,646,972	-				-1.1
2,646,997	+		MIT1002_02367	0.15	+0.6
2,646,997	+		MIT1002_02367	0.15	+0.0
2,647,004	-		MIT1002_02367	0.17	-0.5
2,647,005	-		MIT1002_02367	0.17	-1.8
2,647,061	-		MIT1002_02367	0.33	-1.2
2,647,093	+		MIT1002_02367	0.42	-0.5
2,647,110	+		MIT1002_02367	0.47	+2.0
2,647,110	+		MIT1002_02367	0.47	-3.0
2,647,118	-		MIT1002_02367	0.50	-2.1
2,647,179	+		MIT1002_02367	0.67	+0.2
2,647,318	+				-0.3
2,647,327	+				+1.3
2,647,373	-				+0.4
2,647,384	+				+0.1
2,647,430	+				+0.4
2,647,444	-				-0.4
2,647,569	-		MIT1002_02368	0.24	+0.9
2,647,609	+		MIT1002_02368	0.29	+1.2
2,647,628	+		MIT1002_02368	0.31	+0.2
2,647,698	+		MIT1002_02368	0.40	+0.5
2,647,739	+		MIT1002_02368	0.45	-0.6
2,647,752	+		MIT1002_02368	0.46	+1.1
2,647,789	-		MIT1002_02368	0.51	+1.0
2,647,839	-		MIT1002_02368	0.57	-1.1
2,647,873	-		MIT1002_02368	0.61	+0.6
2,647,873	-		MIT1002_02368	0.61	-1.6
2,647,970	+		MIT1002_02368	0.73	+0.1
2,647,978	-		MIT1002_02368	0.74	+2.6
2,647,995	+		MIT1002_02368	0.76	+2.0
2,648,019	+		MIT1002_02368	0.78	+1.1
2,648,027	+		MIT1002_02368	0.79	-1.3
2,648,029	+		MIT1002_02368	0.80	-1.1
2,648,029	+		MIT1002_02368	0.80	+1.5
2,648,029	+		MIT1002_02368	0.80	-0.0
2,648,029	+		MIT1002_02368	0.80	+1.5
2,648,029	+		MIT1002_02368	0.80	+1.3
2,648,029	+		MIT1002_02368	0.80	+0.6
2,648,037	-		MIT1002_02368	0.81	-0.4
2,648,037	-		MIT1002_02368	0.81	+0.3
2,648,095	-		MIT1002_02368	0.88	-1.0
2,648,126	-				+0.9
2,648,126	-				+0.6
2,648,167	+				-0.2
2,648,167	+				+1.7
2,648,167	+				+1.1
2,648,167	+				+0.1
2,648,175	-				+1.1
2,648,175	-				-0.1
2,648,175	-				+1.4
2,648,175	-				+2.1
2,648,194	-				+2.1
2,648,194	-				+0.0
2,648,214	+				+0.4
2,648,247	-				+2.9
2,648,345	-		MIT1002_02369	0.12	+2.2
2,648,379	-		MIT1002_02369	0.33	-1.4
2,648,384	-		MIT1002_02369	0.36	-0.1
2,648,443	+		MIT1002_02369	0.71	+0.4
2,648,451	-		MIT1002_02369	0.76	+0.1
2,648,470	+		MIT1002_02369	0.87	+0.5
2,648,470	+		MIT1002_02369	0.87	+1.2
2,648,470	+		MIT1002_02369	0.87	+0.6
2,648,475	+				+0.6
2,648,478	-				+0.3
2,648,479	+				+1.0
2,648,487	+				+0.0
2,648,505	-				-0.9
2,648,505	-				+0.9
2,648,505	-				-0.3
2,648,505	-				-1.1
2,648,613	+				+0.2
2,648,635	-				-0.4
2,648,640	-				+1.0
2,648,646	+				+1.1
2,648,654	-				+0.4
2,648,654	-				-0.6
2,648,724	+				-0.5
2,648,782	+				+0.9
2,648,865	+				+0.6
2,648,865	+				-0.2
2,648,870	+				-0.6
2,648,872	+				+0.4
2,648,880	-				-0.2
2,648,882	+				-1.3
2,648,884	+				+0.7
2,648,890	-				-1.2
2,648,890	-				+1.4
2,648,890	-				+1.5
2,649,018	-		MIT1002_02370	0.36	-0.0
2,649,035	-		MIT1002_02370	0.40	+0.8
2,649,174	-		MIT1002_02370	0.79	+1.2
2,649,176	+		MIT1002_02370	0.80	+1.4
2,649,176	+		MIT1002_02370	0.80	+0.4
2,649,176	+		MIT1002_02370	0.80	+0.1
2,649,176	+		MIT1002_02370	0.80	+0.4
2,649,176	+		MIT1002_02370	0.80	+0.6
2,649,184	-		MIT1002_02370	0.82	+1.5
2,649,184	-		MIT1002_02370	0.82	+0.1
2,649,184	-		MIT1002_02370	0.82	-2.4
2,649,184	-		MIT1002_02370	0.82	-1.1
2,649,184	-		MIT1002_02370	0.82	+1.5
2,649,184	-		MIT1002_02370	0.82	-1.2
2,649,184	-		MIT1002_02370	0.82	-0.4
2,649,184	-		MIT1002_02370	0.82	+0.4