Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02011

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
2,247,468	+		MIT1002_02010	0.26	-1.0
2,247,482	+		MIT1002_02010	0.27	-0.9
2,247,561	+		MIT1002_02010	0.33	+0.2
2,247,569	-		MIT1002_02010	0.34	+1.4
2,247,574	+		MIT1002_02010	0.34	+0.9
2,247,591	+		MIT1002_02010	0.35	-1.5
2,247,652	+		MIT1002_02010	0.40	-1.8
2,247,665	-		MIT1002_02010	0.41	+1.1
2,247,779	+		MIT1002_02010	0.50	-1.2
2,247,779	+		MIT1002_02010	0.50	+0.3
2,247,779	+		MIT1002_02010	0.50	+1.7
2,247,787	-		MIT1002_02010	0.50	-0.6
2,248,015	-		MIT1002_02010	0.68	+0.2
2,248,319	+				-0.5
2,248,513	+				-0.7
2,248,531	+				-1.6
2,248,616	+				+1.7
2,248,622	+				-3.7
2,248,622	+				+0.9
2,248,630	-				+1.1
2,248,668	+				+1.1
2,248,676	-				+0.1
2,248,707	-				-0.0
2,248,725	+				-2.4
2,248,725	+				-1.4
2,248,733	+				-0.6
2,248,733	+				-0.0
2,248,733	+				-0.9
2,248,733	+				-1.1
2,248,733	+				-4.0
2,248,733	+				-0.1
2,248,733	+				-1.3
2,248,733	-				-2.7
2,248,741	-				-3.5
2,248,741	-				-1.0
2,248,741	-				-0.8
2,248,741	-				-2.8
2,248,741	-				+0.2
2,248,741	-				+1.2
2,248,741	-				-0.2
2,248,741	-				-2.4
2,248,741	-				+0.5
2,248,741	-				-0.4
2,248,741	-				+0.5
2,248,741	-				-1.5
2,248,797	-				+0.1
2,248,807	-				-1.9
2,248,889	+		MIT1002_02011	0.11	-3.0
2,248,889	+		MIT1002_02011	0.11	-0.5
2,248,929	+		MIT1002_02011	0.12	-1.4
2,248,937	-		MIT1002_02011	0.12	+0.3
2,248,937	-		MIT1002_02011	0.12	-0.0
2,248,972	+		MIT1002_02011	0.13	-1.6
2,249,000	+		MIT1002_02011	0.13	-1.9
2,249,003	+		MIT1002_02011	0.13	+1.1
2,249,016	-		MIT1002_02011	0.14	-2.0
2,249,016	-		MIT1002_02011	0.14	-0.1
2,249,016	-		MIT1002_02011	0.14	-0.6
2,249,037	+		MIT1002_02011	0.14	-2.9
2,249,045	+		MIT1002_02011	0.15	-1.0
2,249,053	-		MIT1002_02011	0.15	-1.8
2,249,057	+		MIT1002_02011	0.15	-0.2
2,249,063	-		MIT1002_02011	0.15	-1.1
2,249,126	+		MIT1002_02011	0.17	-2.8
2,249,136	-		MIT1002_02011	0.17	-0.4
2,249,155	-		MIT1002_02011	0.17	-2.0
2,249,244	+		MIT1002_02011	0.20	-2.4
2,249,287	-		MIT1002_02011	0.21	-1.0
2,249,316	-		MIT1002_02011	0.21	-1.5
2,249,340	-		MIT1002_02011	0.22	-0.9
2,249,340	-		MIT1002_02011	0.22	-1.6
2,249,362	+		MIT1002_02011	0.23	-0.4
2,249,400	+		MIT1002_02011	0.23	-2.3
2,249,481	+		MIT1002_02011	0.26	+0.7
2,249,481	+		MIT1002_02011	0.26	+0.3
2,249,481	+		MIT1002_02011	0.26	-2.1
2,249,481	+		MIT1002_02011	0.26	+1.7
2,249,486	+		MIT1002_02011	0.26	-0.6
2,249,489	-		MIT1002_02011	0.26	-0.2
2,249,512	+		MIT1002_02011	0.26	-1.5
2,249,520	-		MIT1002_02011	0.27	-2.0
2,249,520	-		MIT1002_02011	0.27	-0.5
2,249,520	-		MIT1002_02011	0.27	+2.1
2,249,520	-		MIT1002_02011	0.27	+0.7
2,249,643	+		MIT1002_02011	0.30	-4.0
2,249,678	+		MIT1002_02011	0.31	+1.1
2,249,690	+		MIT1002_02011	0.31	-0.5
2,249,690	+		MIT1002_02011	0.31	+1.3
2,249,690	+		MIT1002_02011	0.31	+0.5
2,249,695	+		MIT1002_02011	0.31	-1.3
2,249,695	+		MIT1002_02011	0.31	-1.5
2,249,755	+		MIT1002_02011	0.32	+0.3
2,249,763	-		MIT1002_02011	0.33	-1.3
2,249,838	+		MIT1002_02011	0.35	-1.2
2,249,877	+		MIT1002_02011	0.36	-2.9
2,250,081	+		MIT1002_02011	0.41	+0.6
2,250,318	+		MIT1002_02011	0.47	-0.3
2,250,318	+		MIT1002_02011	0.47	-0.9
2,250,332	+		MIT1002_02011	0.47	+0.5
2,250,332	+		MIT1002_02011	0.47	-0.3
2,250,365	+		MIT1002_02011	0.48	-1.1
2,250,371	-		MIT1002_02011	0.48	-2.7
2,250,381	+		MIT1002_02011	0.48	+1.1
2,250,389	-		MIT1002_02011	0.48	-2.1
2,250,389	-		MIT1002_02011	0.48	-2.6
2,250,395	-		MIT1002_02011	0.49	-3.0
2,250,397	+		MIT1002_02011	0.49	-1.3
2,250,446	+		MIT1002_02011	0.50	-0.4
2,250,450	-		MIT1002_02011	0.50	-1.0
2,250,453	+		MIT1002_02011	0.50	+1.1
2,250,460	+		MIT1002_02011	0.50	-0.2
2,250,532	-		MIT1002_02011	0.52	-2.3
2,250,537	+		MIT1002_02011	0.52	-1.8
2,250,545	-		MIT1002_02011	0.52	-1.5
2,250,550	-		MIT1002_02011	0.52	-1.9
2,250,591	-		MIT1002_02011	0.54	-0.4
2,250,595	-		MIT1002_02011	0.54	+0.9
2,250,628	+		MIT1002_02011	0.54	+0.7
2,250,759	+		MIT1002_02011	0.58	-0.3
2,250,777	-		MIT1002_02011	0.58	-0.0
2,250,825	-		MIT1002_02011	0.59	-0.8
2,250,827	-		MIT1002_02011	0.59	-1.4
2,250,876	-		MIT1002_02011	0.61	-1.4
2,250,982	-		MIT1002_02011	0.63	-0.3
2,251,126	-		MIT1002_02011	0.67	-0.4
2,251,145	+		MIT1002_02011	0.67	-0.0
2,251,145	+		MIT1002_02011	0.67	-1.4
2,251,147	+		MIT1002_02011	0.68	+0.7
2,251,210	-		MIT1002_02011	0.69	+0.5
2,251,381	+		MIT1002_02011	0.73	+0.7
2,251,389	-		MIT1002_02011	0.74	-3.4
2,251,515	-		MIT1002_02011	0.77	-1.3
2,251,515	-		MIT1002_02011	0.77	-2.4
2,251,550	-		MIT1002_02011	0.78	+2.0
2,251,622	+		MIT1002_02011	0.80	+0.2
2,251,635	+		MIT1002_02011	0.80	-1.4
2,251,681	+		MIT1002_02011	0.81	-2.3
2,251,681	+		MIT1002_02011	0.81	-0.4
2,251,740	+		MIT1002_02011	0.83	-1.6
2,251,740	+		MIT1002_02011	0.83	-1.2
2,251,783	-		MIT1002_02011	0.84	+13.6
2,251,894	+		MIT1002_02011	0.86	-0.7
2,251,894	+		MIT1002_02011	0.86	+0.7
2,251,894	+		MIT1002_02011	0.86	-0.2
2,251,894	+		MIT1002_02011	0.86	-1.0
2,251,895	-		MIT1002_02011	0.86	-1.1
2,251,902	-		MIT1002_02011	0.87	-2.4
2,251,912	-		MIT1002_02011	0.87	-1.6
2,251,917	-		MIT1002_02011	0.87	+0.6
2,251,938	-		MIT1002_02011	0.87	-1.6
2,251,981	+		MIT1002_02011	0.89	-2.0
2,252,042	+				-1.3
2,252,042	+				+1.4
2,252,042	-				+0.2
2,252,050	-				-2.0
2,252,050	-				-1.1
2,252,087	-				+0.3
2,252,104	+				-2.8
2,252,131	-				-1.8
2,252,131	-				+1.7
2,252,220	-				-1.7
2,252,258	-				-1.3
2,252,264	-				-0.5
2,252,329	-				+0.8
2,252,329	-				-0.2
2,252,329	-				-0.0
2,252,331	+				-3.0
2,252,339	-				-3.3
2,252,339	-				-3.2
2,252,339	-				-0.1
2,252,374	+				-0.7
2,252,375	+				-0.9
2,252,379	+				-2.2
2,252,382	-				-0.4
2,252,398	-				-0.5
2,252,442	-				-0.8
2,252,540	-				+0.7
2,252,623	-				-0.9
2,252,654	+				-0.6
2,252,694	+				+1.3
2,252,728	+				-0.0
2,252,903	+				+0.1
2,253,018	+				-2.1
2,253,018	-				-0.0
2,253,072	-		MIT1002_02012	0.12	-0.6
2,253,116	+		MIT1002_02012	0.15	+0.8
2,253,141	-		MIT1002_02012	0.17	+0.8
2,253,141	-		MIT1002_02012	0.17	-0.2
2,253,141	-		MIT1002_02012	0.17	+0.5
2,253,179	+		MIT1002_02012	0.21	+0.7
2,253,182	+		MIT1002_02012	0.21	+1.1
2,253,187	-		MIT1002_02012	0.21	-0.6
2,253,187	-		MIT1002_02012	0.21	+0.6
2,253,190	+		MIT1002_02012	0.22	-1.0
2,253,197	-		MIT1002_02012	0.22	-1.3
2,253,244	-		MIT1002_02012	0.26	+1.5
2,253,300	-		MIT1002_02012	0.31	-2.0
2,253,300	-		MIT1002_02012	0.31	-0.0
2,253,348	+		MIT1002_02012	0.35	+1.7
2,253,370	+		MIT1002_02012	0.37	-0.0