Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02004

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
2,238,589	-				+0.9
2,238,760	+		MIT1002_02003	0.11	+0.7
2,238,760	+		MIT1002_02003	0.11	-0.7
2,238,768	-		MIT1002_02003	0.12	-1.4
2,238,771	+		MIT1002_02003	0.13	+0.8
2,238,802	-		MIT1002_02003	0.17	+1.7
2,238,816	-		MIT1002_02003	0.19	+2.2
2,238,816	-		MIT1002_02003	0.19	-0.2
2,238,979	-		MIT1002_02003	0.40	+0.4
2,239,027	-		MIT1002_02003	0.46	-1.2
2,239,130	+		MIT1002_02003	0.60	-0.2
2,239,175	+		MIT1002_02003	0.66	-0.4
2,239,180	+		MIT1002_02003	0.67	+1.7
2,239,180	+		MIT1002_02003	0.67	-1.3
2,239,183	-		MIT1002_02003	0.67	-0.5
2,239,273	-		MIT1002_02003	0.79	+0.2
2,239,314	-		MIT1002_02003	0.84	+0.8
2,239,325	+		MIT1002_02003	0.86	-0.9
2,239,325	+		MIT1002_02003	0.86	+0.5
2,239,325	+		MIT1002_02003	0.86	+0.2
2,239,483	-				+1.7
2,239,493	-				-1.1
2,239,566	-				-0.2
2,239,582	+				-0.3
2,239,582	+				-0.3
2,239,582	+				+0.7
2,239,648	-		MIT1002_02004	0.17	+0.1
2,239,680	+		MIT1002_02004	0.21	-0.9
2,239,680	-		MIT1002_02004	0.21	-1.8
2,239,719	+		MIT1002_02004	0.27	-0.9
2,239,811	-		MIT1002_02004	0.40	-3.0
2,239,815	+		MIT1002_02004	0.41	-0.0
2,239,857	+		MIT1002_02004	0.47	-0.5
2,239,895	+		MIT1002_02004	0.52	+0.3
2,239,938	-		MIT1002_02004	0.58	-1.1
2,240,070	+		MIT1002_02004	0.77	-1.0
2,240,168	+				-1.3
2,240,180	+				-1.0
2,240,239	+				+3.9
2,240,239	+				-2.4
2,240,239	+				+1.1
2,240,271	-				+0.5
2,240,273	+				+1.3
2,240,295	-				+0.7
2,240,413	-				-2.4
2,240,423	+				-0.2
2,240,423	+				+0.8
2,240,433	+				-1.1
2,240,775	+		MIT1002_02005	0.34	+1.1
2,240,828	-		MIT1002_02005	0.40	+1.7