Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01953

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
2,171,464	+		MIT1002_01952	0.73	-1.4
2,171,489	-		MIT1002_01952	0.74	+0.0
2,171,489	-		MIT1002_01952	0.74	-1.6
2,171,629	+		MIT1002_01952	0.79	-2.8
2,171,648	+		MIT1002_01952	0.80	+0.3
2,171,663	+		MIT1002_01952	0.81	+1.0
2,171,671	-		MIT1002_01952	0.81	-0.2
2,171,702	+		MIT1002_01952	0.82	-0.5
2,171,756	-		MIT1002_01952	0.84	-0.9
2,171,768	+		MIT1002_01952	0.84	+0.7
2,171,889	-		MIT1002_01952	0.89	+1.7
2,171,915	+		MIT1002_01952	0.89	+0.5
2,171,953	+				+1.4
2,171,953	+				-0.3
2,171,973	+				+0.0
2,172,096	+				+0.3
2,172,108	-				-2.1
2,172,122	+				+2.4
2,172,130	-				+0.1
2,172,137	+				-0.5
2,172,168	-				+0.4
2,172,178	+				+0.7
2,172,223	+				-0.9
2,172,223	+				-1.0
2,172,223	+				-0.0
2,172,231	-				-0.7
2,172,231	-				-1.3
2,172,231	-				-0.0
2,172,437	+				+2.1
2,172,445	-				-1.4
2,172,555	-		MIT1002_01953	0.14	+0.5
2,172,779	+		MIT1002_01953	0.29	+0.4
2,173,007	-		MIT1002_01953	0.44	+0.3
2,173,038	+		MIT1002_01953	0.46	+1.2
2,173,193	+		MIT1002_01953	0.56	+0.0
2,173,201	-		MIT1002_01953	0.56	+2.7
2,173,208	+		MIT1002_01953	0.57	+1.2
2,173,216	+		MIT1002_01953	0.57	-0.7
2,173,229	+		MIT1002_01953	0.58	+1.7
2,173,236	+		MIT1002_01953	0.59	-0.9
2,173,271	-		MIT1002_01953	0.61	+0.3
2,173,273	+		MIT1002_01953	0.61	+0.8
2,173,273	+		MIT1002_01953	0.61	-1.8
2,173,273	+		MIT1002_01953	0.61	-0.7
2,173,298	+		MIT1002_01953	0.63	+1.7
2,173,315	-		MIT1002_01953	0.64	-0.8
2,173,328	+		MIT1002_01953	0.65	+1.1
2,173,399	-		MIT1002_01953	0.69	+0.4
2,173,419	-		MIT1002_01953	0.71	+0.8
2,173,446	-		MIT1002_01953	0.73	+0.9
2,173,517	+		MIT1002_01953	0.77	+1.2
2,173,525	-		MIT1002_01953	0.78	+1.1
2,173,679	+		MIT1002_01953	0.88	-1.0
2,173,707	+		MIT1002_01953	0.90	-0.7
2,173,727	-				-0.3
2,173,735	-				-0.0
2,173,815	-				+0.5
2,173,856	+				+1.0
2,174,037	+				+0.2
2,174,122	-				+0.9
2,174,168	-				+0.3
2,174,231	+				-1.5
2,174,285	+				-0.6
2,174,294	-				+3.2
2,174,303	-				-0.6
2,174,388	+				-1.5
2,174,578	+		MIT1002_01954	0.14	-1.6
2,174,590	+		MIT1002_01954	0.14	+1.6
2,174,644	+		MIT1002_01954	0.16	-1.1
2,174,652	-		MIT1002_01954	0.16	-0.3
2,174,727	-		MIT1002_01954	0.19	-0.0
2,174,834	-		MIT1002_01954	0.22	-0.8