Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01819

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
2,026,567	-				+0.8
2,026,617	+		MIT1002_01817	0.43	+1.8
2,026,632	-		MIT1002_01817	0.53	-0.1
2,026,827	-				-0.3
2,026,855	-				+1.1
2,026,894	+				-0.3
2,026,902	-				-1.6
2,026,902	-				-1.9
2,026,929	+				-1.5
2,026,937	-				-2.3
2,027,017	-				-0.6
2,027,083	+		MIT1002_01818	0.20	-0.2
2,027,083	+		MIT1002_01818	0.20	-1.2
2,027,091	-		MIT1002_01818	0.24	-0.8
2,027,091	-		MIT1002_01818	0.24	-0.3
2,027,091	-		MIT1002_01818	0.24	-0.8
2,027,126	+		MIT1002_01818	0.40	+1.6
2,027,126	+		MIT1002_01818	0.40	+1.0
2,027,141	+		MIT1002_01818	0.47	-0.6
2,027,149	-		MIT1002_01818	0.51	-0.8
2,027,281	+				+1.0
2,027,286	+				+2.3
2,027,286	+				-1.5
2,027,320	+				-1.2
2,027,320	+				+1.4
2,027,320	+				-0.7
2,027,328	-				+1.1
2,027,328	-				-2.4
2,027,334	+				+0.9
2,027,370	-				+0.6
2,027,435	-				+1.6
2,027,487	+				-1.0
2,027,497	+				+0.5
2,027,505	-				-1.2
2,027,553	-				-1.2
2,027,602	+				-2.5
2,027,602	+				-0.7
2,027,610	-				+2.0
2,027,632	+				-0.3
2,027,632	+				+0.3
2,027,639	+				-0.8
2,027,640	-				+1.8
2,027,732	-		MIT1002_01819	0.14	-1.5
2,027,732	-		MIT1002_01819	0.14	+1.9
2,027,778	-		MIT1002_01819	0.16	+0.8
2,027,844	+		MIT1002_01819	0.19	+0.3
2,027,844	+		MIT1002_01819	0.19	-1.0
2,027,844	+		MIT1002_01819	0.19	-0.8
2,027,852	-		MIT1002_01819	0.19	+0.8
2,027,852	-		MIT1002_01819	0.19	-1.6
2,027,940	+		MIT1002_01819	0.23	-2.1
2,028,030	+		MIT1002_01819	0.27	+2.9
2,028,165	+		MIT1002_01819	0.33	+1.0
2,028,211	-		MIT1002_01819	0.35	+0.8
2,028,221	+		MIT1002_01819	0.35	+0.2
2,028,221	+		MIT1002_01819	0.35	+1.4
2,028,221	+		MIT1002_01819	0.35	-1.9
2,028,229	-		MIT1002_01819	0.36	+0.2
2,028,250	-		MIT1002_01819	0.37	-0.8
2,028,447	+		MIT1002_01819	0.45	+0.4
2,028,447	+		MIT1002_01819	0.45	-0.3
2,028,528	-		MIT1002_01819	0.49	+0.2
2,028,574	+		MIT1002_01819	0.51	-1.6
2,028,619	+		MIT1002_01819	0.53	-2.0
2,028,627	-		MIT1002_01819	0.53	-0.8
2,028,754	+		MIT1002_01819	0.59	+2.2
2,028,798	+		MIT1002_01819	0.61	-0.7
2,028,842	-		MIT1002_01819	0.63	-0.9
2,028,974	+		MIT1002_01819	0.69	+2.2
2,029,035	-		MIT1002_01819	0.71	-0.3
2,029,035	-		MIT1002_01819	0.71	-0.6
2,029,113	-		MIT1002_01819	0.75	-1.6
2,029,147	+		MIT1002_01819	0.76	+0.0
2,029,205	+		MIT1002_01819	0.79	+1.4
2,029,231	+		MIT1002_01819	0.80	+0.6
2,029,251	+		MIT1002_01819	0.81	-0.5
2,029,342	+		MIT1002_01819	0.85	-0.4
2,029,496	-				-2.0
2,029,509	-				-1.8
2,029,552	+				+0.4
2,029,558	+				-2.2
2,029,707	+				-0.1
2,029,715	-				+1.7
2,029,732	+		MIT1002_01820	0.10	+1.0
2,029,762	-		MIT1002_01820	0.16	-0.3
2,029,780	-		MIT1002_01820	0.20	+0.1
2,029,839	+		MIT1002_01820	0.31	-0.7
2,029,844	+		MIT1002_01820	0.32	+0.4
2,029,847	-		MIT1002_01820	0.33	-0.7
2,029,987	+		MIT1002_01820	0.60	+0.2
2,030,060	+		MIT1002_01820	0.75	-1.0
2,030,188	+				-1.9
2,030,222	-				+0.4
2,030,248	+				+0.4
2,030,372	+				-1.1