Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01750

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
1,942,426	-		MIT1002_01749	0.19	+0.9
1,942,437	-		MIT1002_01749	0.20	+3.2
1,942,492	-		MIT1002_01749	0.26	+2.1
1,942,550	+		MIT1002_01749	0.32	+1.4
1,942,603	+		MIT1002_01749	0.38	+0.5
1,942,611	-		MIT1002_01749	0.39	-0.3
1,942,611	-		MIT1002_01749	0.39	-0.4
1,942,635	+		MIT1002_01749	0.42	+0.6
1,942,689	+		MIT1002_01749	0.47	-0.0
1,942,712	+		MIT1002_01749	0.50	+2.8
1,942,717	+		MIT1002_01749	0.50	+0.6
1,942,720	-		MIT1002_01749	0.51	-1.1
1,942,727	+		MIT1002_01749	0.52	-0.2
1,942,737	+		MIT1002_01749	0.53	-0.2
1,942,745	-		MIT1002_01749	0.54	-1.8
1,942,874	+		MIT1002_01749	0.68	-1.3
1,942,988	+		MIT1002_01749	0.80	-0.2
1,943,020	-		MIT1002_01749	0.84	+2.2
1,943,089	+				-0.5
1,943,153	+				-2.0
1,943,153	+				-3.2
1,943,161	-				-0.2
1,943,266	+				-0.8
1,943,272	-				+1.8
1,943,278	-				-0.4
1,943,364	+				+1.4
1,943,405	+				-0.4
1,943,405	+				+0.5
1,943,459	-				+0.6
1,943,504	+				-1.0
1,943,512	-				+1.0
1,943,518	+				+0.0
1,943,518	+				+1.3
1,943,518	+				-0.3
1,943,535	+				+1.4
1,943,535	+				+1.5
1,943,543	-				-2.2
1,943,571	-				-1.6
1,943,611	+				+3.0
1,943,711	+		MIT1002_01750	0.14	+1.0
1,943,711	+		MIT1002_01750	0.14	+0.7
1,943,711	+		MIT1002_01750	0.14	+1.5
1,943,711	+		MIT1002_01750	0.14	-0.6
1,943,719	-		MIT1002_01750	0.14	-2.0
1,943,734	+		MIT1002_01750	0.15	+0.1
1,943,742	-		MIT1002_01750	0.15	+0.8
1,943,799	-		MIT1002_01750	0.18	+0.3
1,943,808	-		MIT1002_01750	0.19	-0.1
1,943,809	-		MIT1002_01750	0.19	-0.7
1,943,902	+		MIT1002_01750	0.23	-0.3
1,944,025	+		MIT1002_01750	0.29	-0.3
1,944,035	+		MIT1002_01750	0.29	-0.1
1,944,035	+		MIT1002_01750	0.29	-0.1
1,944,035	+		MIT1002_01750	0.29	-0.1
1,944,035	+		MIT1002_01750	0.29	+0.8
1,944,035	+		MIT1002_01750	0.29	+0.5
1,944,035	+		MIT1002_01750	0.29	-0.6
1,944,035	+		MIT1002_01750	0.29	+0.9
1,944,035	+		MIT1002_01750	0.29	-0.4
1,944,035	+		MIT1002_01750	0.29	-0.7
1,944,043	-		MIT1002_01750	0.30	-1.8
1,944,043	-		MIT1002_01750	0.30	+0.4
1,944,062	+		MIT1002_01750	0.30	+1.1
1,944,200	+		MIT1002_01750	0.37	-0.3
1,944,200	+		MIT1002_01750	0.37	-2.5
1,944,296	+		MIT1002_01750	0.41	-0.8
1,944,411	+		MIT1002_01750	0.47	+2.3
1,944,420	+		MIT1002_01750	0.47	-2.1
1,944,506	+		MIT1002_01750	0.51	-0.3
1,944,514	-		MIT1002_01750	0.52	-1.6
1,944,608	+		MIT1002_01750	0.56	-0.5
1,944,616	-		MIT1002_01750	0.57	-0.1
1,944,617	+		MIT1002_01750	0.57	-1.1
1,944,693	-		MIT1002_01750	0.60	+1.3
1,944,762	+		MIT1002_01750	0.63	+0.1
1,944,763	-		MIT1002_01750	0.63	-0.6
1,944,783	-		MIT1002_01750	0.64	-0.9
1,944,794	-		MIT1002_01750	0.65	-1.2
1,944,833	+		MIT1002_01750	0.67	-0.6
1,944,833	+		MIT1002_01750	0.67	-1.3
1,944,902	+		MIT1002_01750	0.70	+1.0
1,944,925	-		MIT1002_01750	0.71	-0.6
1,944,979	+		MIT1002_01750	0.74	+0.7
1,944,983	+		MIT1002_01750	0.74	-1.5
1,945,015	+		MIT1002_01750	0.75	-1.2
1,945,023	-		MIT1002_01750	0.76	+1.4
1,945,023	-		MIT1002_01750	0.76	-0.8
1,945,055	+		MIT1002_01750	0.77	-1.9
1,945,130	-		MIT1002_01750	0.81	-1.1
1,945,137	+		MIT1002_01750	0.81	-1.9
1,945,137	-		MIT1002_01750	0.81	-2.1
1,945,144	+		MIT1002_01750	0.81	-1.6
1,945,227	-		MIT1002_01750	0.85	-0.3
1,945,287	-		MIT1002_01750	0.88	-0.7
1,945,288	+		MIT1002_01750	0.88	+0.7
1,945,298	+		MIT1002_01750	0.89	+0.0
1,945,359	-				+0.4
1,945,380	-				+1.6
1,945,380	-				-1.8
1,945,393	+				+0.9
1,945,460	+				-0.8
1,945,465	+				-0.8
1,945,544	+				-0.5
1,945,544	+				-0.3
1,945,552	-				-1.6
1,945,636	-				+0.6
1,945,687	-				-0.8
1,945,728	+				-1.4
1,945,801	+				+0.2
1,945,825	+		MIT1002_01751	0.11	-0.3
1,945,852	+		MIT1002_01751	0.13	-1.5
1,945,867	+		MIT1002_01751	0.14	-0.1
1,945,867	+		MIT1002_01751	0.14	-1.1
1,945,867	+		MIT1002_01751	0.14	+0.1
1,945,873	+		MIT1002_01751	0.15	-1.2
1,945,875	-		MIT1002_01751	0.15	-0.8
1,945,930	-		MIT1002_01751	0.20	+0.3
1,945,970	+		MIT1002_01751	0.23	-2.2
1,946,012	+		MIT1002_01751	0.26	+0.8
1,946,025	-		MIT1002_01751	0.28	-1.0
1,946,028	+		MIT1002_01751	0.28	+0.4
1,946,028	+		MIT1002_01751	0.28	-1.7
1,946,028	+		MIT1002_01751	0.28	+4.0
1,946,044	+		MIT1002_01751	0.29	-0.4
1,946,045	+		MIT1002_01751	0.29	-2.2
1,946,102	+		MIT1002_01751	0.34	+3.2
1,946,102	+		MIT1002_01751	0.34	-2.8
1,946,110	-		MIT1002_01751	0.35	-2.0
1,946,110	-		MIT1002_01751	0.35	-1.1
1,946,110	-		MIT1002_01751	0.35	+2.2
1,946,145	+		MIT1002_01751	0.38	+0.3
1,946,153	-		MIT1002_01751	0.38	+1.4
1,946,160	+		MIT1002_01751	0.39	-0.9
1,946,175	+		MIT1002_01751	0.40	-0.7
1,946,226	-		MIT1002_01751	0.45	-2.7
1,946,267	+		MIT1002_01751	0.48	+1.4
1,946,268	+		MIT1002_01751	0.48	+2.0
1,946,287	+		MIT1002_01751	0.50	-0.5
1,946,382	-		MIT1002_01751	0.58	-2.1
1,946,420	+		MIT1002_01751	0.61	-1.3