Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01574

Experiment: monoculture; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 6
1,729,786	-		MIT1002_01572	0.79	+1.0
1,729,836	-		MIT1002_01572	0.89	-0.7
1,729,945	-				-0.7
1,730,043	-		MIT1002_01573	0.18	-0.1
1,730,154	-		MIT1002_01573	0.30	+0.4
1,730,156	+		MIT1002_01573	0.31	-1.3
1,730,193	-		MIT1002_01573	0.35	-0.9
1,730,195	-		MIT1002_01573	0.35	-2.5
1,730,232	+		MIT1002_01573	0.39	-0.0
1,730,272	-		MIT1002_01573	0.44	-0.5
1,730,295	-		MIT1002_01573	0.46	-0.7
1,730,363	+		MIT1002_01573	0.54	-0.2
1,730,430	+		MIT1002_01573	0.61	+0.1
1,730,430	+		MIT1002_01573	0.61	-1.6
1,730,460	-		MIT1002_01573	0.64	-1.1
1,730,460	-		MIT1002_01573	0.64	+0.9
1,730,466	+		MIT1002_01573	0.65	+1.3
1,730,471	+		MIT1002_01573	0.66	-0.2
1,730,474	-		MIT1002_01573	0.66	+0.9
1,730,476	+		MIT1002_01573	0.66	-0.2
1,730,476	+		MIT1002_01573	0.66	-1.6
1,730,484	-		MIT1002_01573	0.67	+0.4
1,730,509	-		MIT1002_01573	0.70	-0.2
1,730,527	-		MIT1002_01573	0.72	-0.8
1,730,537	+		MIT1002_01573	0.73	-0.9
1,730,543	-		MIT1002_01573	0.74	-1.2
1,730,589	-		MIT1002_01573	0.79	-0.2
1,730,607	+		MIT1002_01573	0.81	-0.6
1,730,641	+		MIT1002_01573	0.85	+0.9
1,730,670	-		MIT1002_01573	0.88	-1.2
1,730,707	-				-3.2
1,730,726	-				-1.9
1,730,743	-				-2.5
1,730,803	+				-1.4
1,730,808	+				-0.9
1,730,843	-				-2.5
1,730,848	-				+0.0
1,730,849	+				-0.5
1,730,894	-				+0.6
1,730,907	-				-0.6
1,730,955	+				+1.1
1,731,165	+		MIT1002_01574	0.16	-2.3
1,731,165	+		MIT1002_01574	0.16	-1.3
1,731,173	-		MIT1002_01574	0.17	+1.1
1,731,173	-		MIT1002_01574	0.17	+0.3
1,731,173	-		MIT1002_01574	0.17	+0.3
1,731,173	-		MIT1002_01574	0.17	-1.1
1,731,173	-		MIT1002_01574	0.17	-1.9
1,731,173	-		MIT1002_01574	0.17	-0.6
1,731,183	-		MIT1002_01574	0.17	+0.7
1,731,209	+		MIT1002_01574	0.18	-1.3
1,731,453	+		MIT1002_01574	0.29	+1.3
1,731,461	-		MIT1002_01574	0.29	-0.0
1,731,461	-		MIT1002_01574	0.29	-1.1
1,731,461	-		MIT1002_01574	0.29	+0.1
1,731,462	-		MIT1002_01574	0.29	+0.3
1,731,537	+		MIT1002_01574	0.32	-2.2
1,731,537	+		MIT1002_01574	0.32	+1.7
1,731,569	+		MIT1002_01574	0.34	-1.5
1,731,569	+		MIT1002_01574	0.34	+0.1
1,731,571	+		MIT1002_01574	0.34	+1.3
1,731,571	+		MIT1002_01574	0.34	-0.2
1,731,577	-		MIT1002_01574	0.34	+1.9
1,731,579	-		MIT1002_01574	0.34	+0.3
1,731,653	+		MIT1002_01574	0.37	-0.9
1,731,667	+		MIT1002_01574	0.38	-0.5
1,731,716	+		MIT1002_01574	0.40	+1.7
1,731,724	-		MIT1002_01574	0.40	-0.8
1,731,800	-		MIT1002_01574	0.43	-1.1
1,731,930	+		MIT1002_01574	0.49	+2.7
1,731,930	+		MIT1002_01574	0.49	+2.1
1,731,938	-		MIT1002_01574	0.49	-1.0
1,732,030	-		MIT1002_01574	0.53	+1.1
1,732,059	-		MIT1002_01574	0.54	-1.1
1,732,088	-		MIT1002_01574	0.55	+0.2
1,732,095	-		MIT1002_01574	0.56	+1.2
1,732,147	+		MIT1002_01574	0.58	+1.7
1,732,147	+		MIT1002_01574	0.58	-1.2
1,732,155	-		MIT1002_01574	0.58	-1.4
1,732,155	-		MIT1002_01574	0.58	+0.9
1,732,155	-		MIT1002_01574	0.58	-0.1
1,732,159	+		MIT1002_01574	0.58	-0.6
1,732,159	+		MIT1002_01574	0.58	+1.4
1,732,329	-		MIT1002_01574	0.66	+1.3
1,732,364	+		MIT1002_01574	0.67	-0.8
1,732,426	-		MIT1002_01574	0.70	+0.1
1,732,431	+		MIT1002_01574	0.70	-2.0
1,732,431	+		MIT1002_01574	0.70	+0.3
1,732,449	-		MIT1002_01574	0.71	+0.6
1,732,602	+		MIT1002_01574	0.77	-1.7
1,732,670	-		MIT1002_01574	0.80	+0.2
1,732,719	-		MIT1002_01574	0.82	+0.9
1,732,719	-		MIT1002_01574	0.82	-0.9
1,732,721	-		MIT1002_01574	0.82	-2.6
1,732,723	+		MIT1002_01574	0.82	-0.7
1,732,734	+		MIT1002_01574	0.83	-0.9
1,732,742	-		MIT1002_01574	0.83	-0.9
1,732,781	+		MIT1002_01574	0.85	-0.9
1,732,919	-				-0.8
1,732,971	+				-0.9
1,732,971	+				-1.6
1,732,979	-				-0.6
1,732,979	-				+0.9
1,733,038	+				-0.8
1,733,038	+				-1.7
1,733,038	+				+0.3
1,733,038	+				-0.0
1,733,038	+				+0.2
1,733,046	-				+0.2
1,733,046	-				-0.3
1,733,046	-				-0.8
1,733,062	-				-0.1
1,733,190	-				-0.9
1,733,228	+				-0.6
1,733,236	-				+1.7
1,733,236	-				-0.4
1,733,236	-				-0.2
1,733,236	-				-0.2
1,733,236	-				+0.9
1,733,236	-				+0.1
1,733,241	-				-1.2
1,733,281	-		MIT1002_01575	0.10	-1.2
1,733,301	-		MIT1002_01575	0.11	-0.2
1,733,318	+		MIT1002_01575	0.13	+0.2
1,733,396	+		MIT1002_01575	0.18	-1.6
1,733,397	+		MIT1002_01575	0.18	+0.7
1,733,405	-		MIT1002_01575	0.19	-1.3
1,733,406	-		MIT1002_01575	0.19	-1.5
1,733,526	+		MIT1002_01575	0.27	-2.1
1,733,797	+		MIT1002_01575	0.46	-2.7
1,733,820	-		MIT1002_01575	0.47	-1.4
1,733,868	-		MIT1002_01575	0.51	-1.5
1,733,911	+		MIT1002_01575	0.54	-0.3
1,733,977	-		MIT1002_01575	0.58	+0.8
1,733,977	-		MIT1002_01575	0.58	-2.6
1,733,977	-		MIT1002_01575	0.58	-3.9
1,733,994	-		MIT1002_01575	0.59	-1.0
1,734,005	+		MIT1002_01575	0.60	+1.2
1,734,038	-		MIT1002_01575	0.62	-1.0
1,734,061	-		MIT1002_01575	0.64	-1.8
1,734,082	-		MIT1002_01575	0.65	-1.2
1,734,136	-		MIT1002_01575	0.69	-1.1
1,734,141	-		MIT1002_01575	0.70	+1.5