Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01090

Experiment: monoculture; Experiment B, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_01088 and MIT1002_01089 are separated by 72 nucleotidesMIT1002_01089 and MIT1002_01090 are separated by 350 nucleotidesMIT1002_01090 and MIT1002_01091 are separated by 227 nucleotidesMIT1002_01091 and MIT1002_01092 are separated by 27 nucleotides MIT1002_01088: MIT1002_01088 - Flagellum-specific ATP synthase, at 1,196,242 to 1,197,576 _01088 MIT1002_01089: MIT1002_01089 - flagellar biosynthesis chaperone, at 1,197,649 to 1,198,095 _01089 MIT1002_01090: MIT1002_01090 - flagellar hook-length control protein, at 1,198,446 to 1,200,761 _01090 MIT1002_01091: MIT1002_01091 - flagellar basal body-associated protein FliL, at 1,200,989 to 1,201,528 _01091 MIT1002_01092: MIT1002_01092 - Flagellar motor switch protein FliM, at 1,201,556 to 1,202,614 _01092 Position (kb) 1198 1199 1200 1201Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1197.500 kb on + strandat 1197.519 kb on - strandat 1197.552 kb on + strandat 1197.552 kb on + strandat 1197.552 kb on + strandat 1197.552 kb on + strandat 1197.560 kb on - strandat 1197.560 kb on - strandat 1197.560 kb on - strandat 1197.583 kb on + strandat 1197.583 kb on + strandat 1197.586 kb on - strandat 1197.586 kb on - strandat 1197.734 kb on + strand, within MIT1002_01089at 1197.742 kb on - strand, within MIT1002_01089at 1197.764 kb on + strand, within MIT1002_01089at 1197.764 kb on + strand, within MIT1002_01089at 1197.764 kb on + strand, within MIT1002_01089at 1197.764 kb on + strand, within MIT1002_01089at 1197.764 kb on + strand, within MIT1002_01089at 1197.764 kb on + strand, within MIT1002_01089at 1197.764 kb on + strand, within MIT1002_01089at 1197.764 kb on + strand, within MIT1002_01089at 1197.764 kb on + strand, within MIT1002_01089at 1197.764 kb on + strand, within MIT1002_01089at 1197.772 kb on - strand, within MIT1002_01089at 1197.772 kb on - strand, within MIT1002_01089at 1197.981 kb on - strand, within MIT1002_01089at 1198.033 kb on - strand, within MIT1002_01089at 1198.035 kb on + strand, within MIT1002_01089at 1198.110 kb on - strandat 1198.121 kb on + strandat 1198.232 kb on - strandat 1198.251 kb on + strandat 1198.577 kb on - strandat 1198.665 kb on + strandat 1198.695 kb on + strand, within MIT1002_01090at 1198.787 kb on + strand, within MIT1002_01090at 1198.787 kb on + strand, within MIT1002_01090at 1198.795 kb on - strand, within MIT1002_01090at 1198.795 kb on - strand, within MIT1002_01090at 1198.801 kb on + strand, within MIT1002_01090at 1198.847 kb on - strand, within MIT1002_01090at 1198.851 kb on + strand, within MIT1002_01090at 1198.854 kb on - strand, within MIT1002_01090at 1198.877 kb on + strand, within MIT1002_01090at 1198.880 kb on - strand, within MIT1002_01090at 1198.885 kb on - strand, within MIT1002_01090at 1198.885 kb on - strand, within MIT1002_01090at 1198.927 kb on - strand, within MIT1002_01090at 1199.044 kb on - strand, within MIT1002_01090at 1199.065 kb on + strand, within MIT1002_01090at 1199.073 kb on - strand, within MIT1002_01090at 1199.147 kb on - strand, within MIT1002_01090at 1199.261 kb on - strand, within MIT1002_01090at 1199.284 kb on - strand, within MIT1002_01090at 1199.306 kb on - strand, within MIT1002_01090at 1199.329 kb on - strand, within MIT1002_01090at 1199.346 kb on + strand, within MIT1002_01090at 1199.351 kb on + strand, within MIT1002_01090at 1199.390 kb on - strand, within MIT1002_01090at 1199.488 kb on + strand, within MIT1002_01090at 1199.521 kb on - strand, within MIT1002_01090at 1199.541 kb on + strand, within MIT1002_01090at 1199.720 kb on - strand, within MIT1002_01090at 1199.792 kb on + strand, within MIT1002_01090at 1199.846 kb on + strand, within MIT1002_01090at 1199.854 kb on - strand, within MIT1002_01090at 1199.983 kb on - strand, within MIT1002_01090at 1199.983 kb on - strand, within MIT1002_01090at 1199.983 kb on - strand, within MIT1002_01090at 1199.983 kb on - strand, within MIT1002_01090at 1200.011 kb on + strand, within MIT1002_01090at 1200.055 kb on + strand, within MIT1002_01090at 1200.055 kb on + strand, within MIT1002_01090at 1200.063 kb on - strand, within MIT1002_01090at 1200.063 kb on - strand, within MIT1002_01090at 1200.118 kb on + strand, within MIT1002_01090at 1200.126 kb on - strand, within MIT1002_01090at 1200.126 kb on - strand, within MIT1002_01090at 1200.126 kb on - strand, within MIT1002_01090at 1200.156 kb on + strand, within MIT1002_01090at 1200.240 kb on - strand, within MIT1002_01090at 1200.240 kb on - strand, within MIT1002_01090at 1200.453 kb on - strand, within MIT1002_01090at 1200.471 kb on + strand, within MIT1002_01090at 1200.560 kb on - strandat 1200.740 kb on - strandat 1200.757 kb on - strandat 1200.869 kb on - strandat 1200.900 kb on + strandat 1201.105 kb on + strand, within MIT1002_01091at 1201.137 kb on + strand, within MIT1002_01091at 1201.173 kb on + strand, within MIT1002_01091at 1201.265 kb on + strand, within MIT1002_01091at 1201.270 kb on + strand, within MIT1002_01091at 1201.273 kb on - strand, within MIT1002_01091at 1201.319 kb on - strand, within MIT1002_01091at 1201.346 kb on - strand, within MIT1002_01091at 1201.366 kb on + strand, within MIT1002_01091at 1201.427 kb on - strand, within MIT1002_01091at 1201.507 kb on - strandat 1201.544 kb on + strandat 1201.592 kb on + strandat 1201.592 kb on + strandat 1201.592 kb on + strandat 1201.602 kb on + strandat 1201.602 kb on + strandat 1201.602 kb on + strandat 1201.602 kb on + strandat 1201.610 kb on - strandat 1201.610 kb on - strandat 1201.689 kb on - strand, within MIT1002_01092at 1201.698 kb on + strand, within MIT1002_01092at 1201.707 kb on - strand, within MIT1002_01092at 1201.739 kb on + strand, within MIT1002_01092

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6
remove
1,197,500 + -3.3
1,197,519 - -0.8
1,197,552 + -1.3
1,197,552 + -2.3
1,197,552 + -1.8
1,197,552 + -0.2
1,197,560 - +0.1
1,197,560 - -1.0
1,197,560 - +0.6
1,197,583 + +1.7
1,197,583 + +0.7
1,197,586 - +2.0
1,197,586 - -2.0
1,197,734 + MIT1002_01089 0.19 -1.9
1,197,742 - MIT1002_01089 0.21 +0.7
1,197,764 + MIT1002_01089 0.26 -1.4
1,197,764 + MIT1002_01089 0.26 -0.7
1,197,764 + MIT1002_01089 0.26 -1.4
1,197,764 + MIT1002_01089 0.26 -3.3
1,197,764 + MIT1002_01089 0.26 -1.6
1,197,764 + MIT1002_01089 0.26 -0.5
1,197,764 + MIT1002_01089 0.26 +0.1
1,197,764 + MIT1002_01089 0.26 +0.3
1,197,764 + MIT1002_01089 0.26 -0.5
1,197,764 + MIT1002_01089 0.26 +0.5
1,197,772 - MIT1002_01089 0.28 -0.8
1,197,772 - MIT1002_01089 0.28 -2.2
1,197,981 - MIT1002_01089 0.74 +1.9
1,198,033 - MIT1002_01089 0.86 -0.8
1,198,035 + MIT1002_01089 0.86 -3.3
1,198,110 - +1.2
1,198,121 + -1.1
1,198,232 - +3.0
1,198,251 + -2.8
1,198,577 - +0.3
1,198,665 + +0.9
1,198,695 + MIT1002_01090 0.11 +1.7
1,198,787 + MIT1002_01090 0.15 -0.5
1,198,787 + MIT1002_01090 0.15 +1.5
1,198,795 - MIT1002_01090 0.15 -0.5
1,198,795 - MIT1002_01090 0.15 +0.9
1,198,801 + MIT1002_01090 0.15 -0.2
1,198,847 - MIT1002_01090 0.17 +0.3
1,198,851 + MIT1002_01090 0.17 -1.1
1,198,854 - MIT1002_01090 0.18 +0.1
1,198,877 + MIT1002_01090 0.19 -0.6
1,198,880 - MIT1002_01090 0.19 +0.9
1,198,885 - MIT1002_01090 0.19 -0.9
1,198,885 - MIT1002_01090 0.19 -1.3
1,198,927 - MIT1002_01090 0.21 -0.8
1,199,044 - MIT1002_01090 0.26 -0.0
1,199,065 + MIT1002_01090 0.27 +0.1
1,199,073 - MIT1002_01090 0.27 +0.9
1,199,147 - MIT1002_01090 0.30 -1.0
1,199,261 - MIT1002_01090 0.35 -0.5
1,199,284 - MIT1002_01090 0.36 +0.1
1,199,306 - MIT1002_01090 0.37 +0.7
1,199,329 - MIT1002_01090 0.38 -0.1
1,199,346 + MIT1002_01090 0.39 +1.0
1,199,351 + MIT1002_01090 0.39 +2.3
1,199,390 - MIT1002_01090 0.41 +0.5
1,199,488 + MIT1002_01090 0.45 -1.1
1,199,521 - MIT1002_01090 0.46 +2.3
1,199,541 + MIT1002_01090 0.47 +1.2
1,199,720 - MIT1002_01090 0.55 -0.3
1,199,792 + MIT1002_01090 0.58 +0.5
1,199,846 + MIT1002_01090 0.60 -0.8
1,199,854 - MIT1002_01090 0.61 +0.5
1,199,983 - MIT1002_01090 0.66 -1.1
1,199,983 - MIT1002_01090 0.66 -0.6
1,199,983 - MIT1002_01090 0.66 -0.8
1,199,983 - MIT1002_01090 0.66 -1.5
1,200,011 + MIT1002_01090 0.68 -1.3
1,200,055 + MIT1002_01090 0.69 +0.4
1,200,055 + MIT1002_01090 0.69 +1.6
1,200,063 - MIT1002_01090 0.70 -1.0
1,200,063 - MIT1002_01090 0.70 +0.0
1,200,118 + MIT1002_01090 0.72 -0.3
1,200,126 - MIT1002_01090 0.73 -0.7
1,200,126 - MIT1002_01090 0.73 +2.6
1,200,126 - MIT1002_01090 0.73 +1.0
1,200,156 + MIT1002_01090 0.74 +0.5
1,200,240 - MIT1002_01090 0.77 +1.1
1,200,240 - MIT1002_01090 0.77 +0.9
1,200,453 - MIT1002_01090 0.87 +0.1
1,200,471 + MIT1002_01090 0.87 +0.1
1,200,560 - -0.5
1,200,740 - -2.2
1,200,757 - +0.2
1,200,869 - +1.3
1,200,900 + -0.7
1,201,105 + MIT1002_01091 0.21 +1.7
1,201,137 + MIT1002_01091 0.27 +1.6
1,201,173 + MIT1002_01091 0.34 +0.7
1,201,265 + MIT1002_01091 0.51 +0.1
1,201,270 + MIT1002_01091 0.52 +0.3
1,201,273 - MIT1002_01091 0.53 -2.1
1,201,319 - MIT1002_01091 0.61 +0.7
1,201,346 - MIT1002_01091 0.66 -0.8
1,201,366 + MIT1002_01091 0.70 +0.6
1,201,427 - MIT1002_01091 0.81 +2.2
1,201,507 - +1.2
1,201,544 + +0.5
1,201,592 + -0.9
1,201,592 + -1.2
1,201,592 + +0.7
1,201,602 + +0.8
1,201,602 + +0.2
1,201,602 + -2.1
1,201,602 + +2.5
1,201,610 - -1.6
1,201,610 - +0.7
1,201,689 - MIT1002_01092 0.13 +1.6
1,201,698 + MIT1002_01092 0.13 -1.7
1,201,707 - MIT1002_01092 0.14 -0.8
1,201,739 + MIT1002_01092 0.17 -1.4

Or see this region's nucleotide sequence