Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00858

Experiment: monoculture; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00857 and MIT1002_00858 are separated by 336 nucleotidesMIT1002_00858 and MIT1002_00859 are separated by 72 nucleotidesMIT1002_00859 and MIT1002_00860 are separated by 240 nucleotides MIT1002_00857: MIT1002_00857 - leucine ABC transporter subunit substrate-binding protein LivK, at 941,028 to 942,206 _00857 MIT1002_00858: MIT1002_00858 - Exonuclease, at 942,543 to 943,040 _00858 MIT1002_00859: MIT1002_00859 - hypothetical protein, at 943,113 to 943,583 _00859 MIT1002_00860: MIT1002_00860 - S-adenosylmethionine synthase, at 943,824 to 944,969 _00860 Position (kb) 942 943 944Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 941.573 kb on - strand, within MIT1002_00857at 941.588 kb on - strand, within MIT1002_00857at 941.614 kb on - strand, within MIT1002_00857at 941.614 kb on - strand, within MIT1002_00857at 941.670 kb on + strand, within MIT1002_00857at 941.670 kb on + strand, within MIT1002_00857at 941.670 kb on + strand, within MIT1002_00857at 941.680 kb on + strand, within MIT1002_00857at 941.688 kb on - strand, within MIT1002_00857at 941.688 kb on - strand, within MIT1002_00857at 941.858 kb on + strand, within MIT1002_00857at 941.863 kb on + strand, within MIT1002_00857at 941.880 kb on + strand, within MIT1002_00857at 941.946 kb on + strand, within MIT1002_00857at 941.946 kb on + strand, within MIT1002_00857at 941.954 kb on - strand, within MIT1002_00857at 941.956 kb on - strand, within MIT1002_00857at 942.001 kb on - strand, within MIT1002_00857at 942.045 kb on + strand, within MIT1002_00857at 942.075 kb on + strand, within MIT1002_00857at 942.084 kb on + strand, within MIT1002_00857at 942.143 kb on - strandat 942.212 kb on - strandat 942.237 kb on - strandat 942.256 kb on + strandat 942.349 kb on - strandat 942.364 kb on + strandat 942.380 kb on + strandat 942.400 kb on + strandat 942.596 kb on - strand, within MIT1002_00858at 942.610 kb on - strand, within MIT1002_00858at 942.640 kb on + strand, within MIT1002_00858at 942.715 kb on + strand, within MIT1002_00858at 942.715 kb on + strand, within MIT1002_00858at 942.718 kb on - strand, within MIT1002_00858at 942.723 kb on - strand, within MIT1002_00858at 942.728 kb on + strand, within MIT1002_00858at 942.728 kb on - strand, within MIT1002_00858at 942.728 kb on - strand, within MIT1002_00858at 942.823 kb on + strand, within MIT1002_00858at 942.837 kb on - strand, within MIT1002_00858at 942.853 kb on - strand, within MIT1002_00858at 942.880 kb on + strand, within MIT1002_00858at 942.928 kb on + strand, within MIT1002_00858at 943.100 kb on + strandat 943.103 kb on - strandat 943.194 kb on + strand, within MIT1002_00859at 943.194 kb on + strand, within MIT1002_00859at 943.202 kb on - strand, within MIT1002_00859at 943.202 kb on - strand, within MIT1002_00859at 943.224 kb on + strand, within MIT1002_00859at 943.312 kb on + strand, within MIT1002_00859at 943.312 kb on + strand, within MIT1002_00859at 943.312 kb on + strand, within MIT1002_00859at 943.312 kb on + strand, within MIT1002_00859at 943.312 kb on + strand, within MIT1002_00859at 943.336 kb on + strand, within MIT1002_00859at 943.344 kb on - strand, within MIT1002_00859at 943.367 kb on - strand, within MIT1002_00859at 943.381 kb on + strand, within MIT1002_00859at 943.387 kb on + strand, within MIT1002_00859at 943.387 kb on + strand, within MIT1002_00859at 943.481 kb on + strand, within MIT1002_00859at 943.481 kb on + strand, within MIT1002_00859at 943.481 kb on + strand, within MIT1002_00859at 943.486 kb on + strand, within MIT1002_00859at 943.486 kb on + strand, within MIT1002_00859at 943.489 kb on - strand, within MIT1002_00859at 943.494 kb on - strand, within MIT1002_00859at 943.494 kb on - strand, within MIT1002_00859at 943.494 kb on - strand, within MIT1002_00859at 943.530 kb on - strand, within MIT1002_00859at 943.599 kb on + strandat 943.636 kb on - strandat 943.844 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6
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941,573 - MIT1002_00857 0.46 -0.6
941,588 - MIT1002_00857 0.47 -1.1
941,614 - MIT1002_00857 0.50 +0.5
941,614 - MIT1002_00857 0.50 -0.6
941,670 + MIT1002_00857 0.54 +1.8
941,670 + MIT1002_00857 0.54 -0.9
941,670 + MIT1002_00857 0.54 -0.7
941,680 + MIT1002_00857 0.55 -2.6
941,688 - MIT1002_00857 0.56 +1.9
941,688 - MIT1002_00857 0.56 +1.1
941,858 + MIT1002_00857 0.70 +2.9
941,863 + MIT1002_00857 0.71 +0.3
941,880 + MIT1002_00857 0.72 +0.8
941,946 + MIT1002_00857 0.78 -1.7
941,946 + MIT1002_00857 0.78 -1.0
941,954 - MIT1002_00857 0.79 -0.2
941,956 - MIT1002_00857 0.79 +1.7
942,001 - MIT1002_00857 0.83 +0.5
942,045 + MIT1002_00857 0.86 +0.2
942,075 + MIT1002_00857 0.89 -0.6
942,084 + MIT1002_00857 0.90 +1.1
942,143 - -1.4
942,212 - -0.4
942,237 - -0.8
942,256 + -1.8
942,349 - +0.3
942,364 + -1.2
942,380 + -0.4
942,400 + -0.3
942,596 - MIT1002_00858 0.11 +0.6
942,610 - MIT1002_00858 0.13 -0.9
942,640 + MIT1002_00858 0.19 +1.9
942,715 + MIT1002_00858 0.35 -0.5
942,715 + MIT1002_00858 0.35 +0.1
942,718 - MIT1002_00858 0.35 +1.6
942,723 - MIT1002_00858 0.36 -0.2
942,728 + MIT1002_00858 0.37 -0.5
942,728 - MIT1002_00858 0.37 -0.4
942,728 - MIT1002_00858 0.37 +0.6
942,823 + MIT1002_00858 0.56 -0.5
942,837 - MIT1002_00858 0.59 +4.6
942,853 - MIT1002_00858 0.62 -0.3
942,880 + MIT1002_00858 0.68 -0.2
942,928 + MIT1002_00858 0.77 -2.2
943,100 + +1.1
943,103 - -0.4
943,194 + MIT1002_00859 0.17 +1.7
943,194 + MIT1002_00859 0.17 -0.1
943,202 - MIT1002_00859 0.19 +1.3
943,202 - MIT1002_00859 0.19 +0.6
943,224 + MIT1002_00859 0.24 +0.1
943,312 + MIT1002_00859 0.42 -0.6
943,312 + MIT1002_00859 0.42 -1.8
943,312 + MIT1002_00859 0.42 -1.5
943,312 + MIT1002_00859 0.42 -1.1
943,312 + MIT1002_00859 0.42 +1.2
943,336 + MIT1002_00859 0.47 +1.2
943,344 - MIT1002_00859 0.49 -0.0
943,367 - MIT1002_00859 0.54 -1.2
943,381 + MIT1002_00859 0.57 +0.3
943,387 + MIT1002_00859 0.58 +0.4
943,387 + MIT1002_00859 0.58 +3.3
943,481 + MIT1002_00859 0.78 +0.5
943,481 + MIT1002_00859 0.78 -1.3
943,481 + MIT1002_00859 0.78 -1.5
943,486 + MIT1002_00859 0.79 +1.8
943,486 + MIT1002_00859 0.79 -0.0
943,489 - MIT1002_00859 0.80 +1.9
943,494 - MIT1002_00859 0.81 -1.3
943,494 - MIT1002_00859 0.81 -0.9
943,494 - MIT1002_00859 0.81 -0.5
943,530 - MIT1002_00859 0.89 -1.1
943,599 + +1.8
943,636 - +0.2
943,844 + +0.2

Or see this region's nucleotide sequence