Experiment: monoculture; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00652 and MIT1002_00653 overlap by 4 nucleotides MIT1002_00653 and MIT1002_00654 overlap by 6 nucleotides MIT1002_00654 and MIT1002_00655 are separated by 85 nucleotides
MIT1002_00652: MIT1002_00652 - Chemotaxis protein CheY, at 707,637 to 708,707
_00652
MIT1002_00653: MIT1002_00653 - putative diguanylate cyclase AdrA, at 708,704 to 709,693
_00653
MIT1002_00654: MIT1002_00654 - Signal transduction histidine-protein kinase BarA, at 709,688 to 711,874
_00654
MIT1002_00655: MIT1002_00655 - muropeptide transporter, at 711,960 to 713,306
_00655
Position (kb) 709
710
711
712 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 708.700 kb on + strand at 708.770 kb on - strand at 708.788 kb on - strand at 708.829 kb on - strand, within MIT1002_00653 at 708.938 kb on - strand, within MIT1002_00653 at 708.955 kb on - strand, within MIT1002_00653 at 709.022 kb on + strand, within MIT1002_00653 at 709.027 kb on + strand, within MIT1002_00653 at 709.147 kb on + strand, within MIT1002_00653 at 709.155 kb on - strand, within MIT1002_00653 at 709.174 kb on + strand, within MIT1002_00653 at 709.219 kb on - strand, within MIT1002_00653 at 709.287 kb on - strand, within MIT1002_00653 at 709.369 kb on - strand, within MIT1002_00653 at 709.369 kb on - strand, within MIT1002_00653 at 709.374 kb on - strand, within MIT1002_00653 at 709.510 kb on + strand, within MIT1002_00653 at 709.518 kb on - strand, within MIT1002_00653 at 709.568 kb on + strand, within MIT1002_00653 at 709.614 kb on - strand at 709.685 kb on + strand at 709.688 kb on + strand at 709.688 kb on + strand at 709.693 kb on - strand at 709.701 kb on - strand at 709.713 kb on - strand at 709.720 kb on + strand at 709.720 kb on + strand at 709.728 kb on - strand at 709.728 kb on - strand at 709.728 kb on - strand at 709.750 kb on + strand at 709.753 kb on - strand at 709.789 kb on + strand at 709.822 kb on + strand at 709.830 kb on - strand at 709.944 kb on + strand, within MIT1002_00654 at 709.944 kb on + strand, within MIT1002_00654 at 709.952 kb on - strand, within MIT1002_00654 at 709.952 kb on - strand, within MIT1002_00654 at 710.066 kb on - strand, within MIT1002_00654 at 710.074 kb on + strand, within MIT1002_00654 at 710.082 kb on - strand, within MIT1002_00654 at 710.102 kb on - strand, within MIT1002_00654 at 710.137 kb on - strand, within MIT1002_00654 at 710.174 kb on + strand, within MIT1002_00654 at 710.235 kb on + strand, within MIT1002_00654 at 710.245 kb on + strand, within MIT1002_00654 at 710.245 kb on + strand, within MIT1002_00654 at 710.253 kb on - strand, within MIT1002_00654 at 710.307 kb on - strand, within MIT1002_00654 at 710.335 kb on - strand, within MIT1002_00654 at 710.335 kb on - strand, within MIT1002_00654 at 710.338 kb on + strand, within MIT1002_00654 at 710.377 kb on - strand, within MIT1002_00654 at 710.400 kb on - strand, within MIT1002_00654 at 710.426 kb on + strand, within MIT1002_00654 at 710.440 kb on + strand, within MIT1002_00654 at 710.448 kb on - strand, within MIT1002_00654 at 710.462 kb on + strand, within MIT1002_00654 at 710.464 kb on + strand, within MIT1002_00654 at 710.470 kb on - strand, within MIT1002_00654 at 710.472 kb on + strand, within MIT1002_00654 at 710.517 kb on - strand, within MIT1002_00654 at 710.520 kb on - strand, within MIT1002_00654 at 710.597 kb on + strand, within MIT1002_00654 at 710.620 kb on - strand, within MIT1002_00654 at 710.630 kb on - strand, within MIT1002_00654 at 710.731 kb on + strand, within MIT1002_00654 at 710.731 kb on - strand, within MIT1002_00654 at 710.832 kb on + strand, within MIT1002_00654 at 710.836 kb on - strand, within MIT1002_00654 at 710.942 kb on + strand, within MIT1002_00654 at 711.044 kb on - strand, within MIT1002_00654 at 711.081 kb on + strand, within MIT1002_00654 at 711.110 kb on - strand, within MIT1002_00654 at 711.150 kb on + strand, within MIT1002_00654 at 711.310 kb on + strand, within MIT1002_00654 at 711.351 kb on + strand, within MIT1002_00654 at 711.351 kb on + strand, within MIT1002_00654 at 711.351 kb on + strand, within MIT1002_00654 at 711.354 kb on - strand, within MIT1002_00654 at 711.357 kb on + strand, within MIT1002_00654 at 711.359 kb on - strand, within MIT1002_00654 at 711.441 kb on + strand, within MIT1002_00654 at 711.446 kb on + strand, within MIT1002_00654 at 711.449 kb on - strand, within MIT1002_00654 at 711.463 kb on + strand, within MIT1002_00654 at 711.503 kb on - strand, within MIT1002_00654 at 711.511 kb on - strand, within MIT1002_00654 at 711.564 kb on + strand, within MIT1002_00654 at 711.591 kb on - strand, within MIT1002_00654 at 711.591 kb on - strand, within MIT1002_00654 at 711.604 kb on - strand, within MIT1002_00654 at 711.663 kb on + strand at 711.663 kb on + strand at 711.709 kb on + strand at 711.709 kb on + strand at 711.777 kb on + strand at 711.779 kb on + strand at 711.789 kb on + strand at 711.874 kb on + strand at 712.113 kb on + strand, within MIT1002_00655 at 712.129 kb on - strand, within MIT1002_00655 at 712.139 kb on - strand, within MIT1002_00655 at 712.156 kb on - strand, within MIT1002_00655 at 712.306 kb on + strand, within MIT1002_00655 at 712.306 kb on + strand, within MIT1002_00655 at 712.306 kb on + strand, within MIT1002_00655 at 712.314 kb on - strand, within MIT1002_00655 at 712.333 kb on - strand, within MIT1002_00655 at 712.404 kb on - strand, within MIT1002_00655 at 712.465 kb on + strand, within MIT1002_00655 at 712.580 kb on + strand, within MIT1002_00655 at 712.585 kb on + strand, within MIT1002_00655 at 712.692 kb on + strand, within MIT1002_00655 at 712.702 kb on + strand, within MIT1002_00655 at 712.780 kb on - strand, within MIT1002_00655 at 712.788 kb on + strand, within MIT1002_00655 at 712.788 kb on + strand, within MIT1002_00655 at 712.788 kb on + strand, within MIT1002_00655 at 712.806 kb on + strand, within MIT1002_00655 at 712.817 kb on + strand, within MIT1002_00655 at 712.859 kb on - strand, within MIT1002_00655
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6 remove 708,700 + -0.3 708,770 - -0.2 708,788 - +0.6 708,829 - MIT1002_00653 0.13 +0.8 708,938 - MIT1002_00653 0.24 -1.3 708,955 - MIT1002_00653 0.25 -0.7 709,022 + MIT1002_00653 0.32 -0.9 709,027 + MIT1002_00653 0.33 +0.4 709,147 + MIT1002_00653 0.45 +1.3 709,155 - MIT1002_00653 0.46 -1.3 709,174 + MIT1002_00653 0.47 -0.9 709,219 - MIT1002_00653 0.52 -1.4 709,287 - MIT1002_00653 0.59 +0.4 709,369 - MIT1002_00653 0.67 +0.4 709,369 - MIT1002_00653 0.67 -0.3 709,374 - MIT1002_00653 0.68 -2.3 709,510 + MIT1002_00653 0.81 -2.0 709,518 - MIT1002_00653 0.82 +1.2 709,568 + MIT1002_00653 0.87 -1.3 709,614 - -1.0 709,685 + -0.3 709,688 + -1.3 709,688 + -0.6 709,693 - -0.3 709,701 - -1.2 709,713 - -0.6 709,720 + -0.3 709,720 + -1.3 709,728 - -0.3 709,728 - +2.1 709,728 - -1.6 709,750 + -0.9 709,753 - -0.3 709,789 + -0.3 709,822 + -2.3 709,830 - -0.6 709,944 + MIT1002_00654 0.12 +1.3 709,944 + MIT1002_00654 0.12 -1.7 709,952 - MIT1002_00654 0.12 -2.9 709,952 - MIT1002_00654 0.12 -0.9 710,066 - MIT1002_00654 0.17 -0.4 710,074 + MIT1002_00654 0.18 +0.2 710,082 - MIT1002_00654 0.18 +1.5 710,102 - MIT1002_00654 0.19 +0.1 710,137 - MIT1002_00654 0.21 +1.6 710,174 + MIT1002_00654 0.22 -0.1 710,235 + MIT1002_00654 0.25 +1.7 710,245 + MIT1002_00654 0.25 -1.1 710,245 + MIT1002_00654 0.25 +0.7 710,253 - MIT1002_00654 0.26 -0.2 710,307 - MIT1002_00654 0.28 -3.6 710,335 - MIT1002_00654 0.30 +0.1 710,335 - MIT1002_00654 0.30 +0.0 710,338 + MIT1002_00654 0.30 +0.2 710,377 - MIT1002_00654 0.32 -0.2 710,400 - MIT1002_00654 0.33 -0.6 710,426 + MIT1002_00654 0.34 -1.0 710,440 + MIT1002_00654 0.34 -1.4 710,448 - MIT1002_00654 0.35 +0.5 710,462 + MIT1002_00654 0.35 -0.1 710,464 + MIT1002_00654 0.35 +0.3 710,470 - MIT1002_00654 0.36 -1.7 710,472 + MIT1002_00654 0.36 -1.6 710,517 - MIT1002_00654 0.38 +0.7 710,520 - MIT1002_00654 0.38 -0.0 710,597 + MIT1002_00654 0.42 +0.9 710,620 - MIT1002_00654 0.43 +0.1 710,630 - MIT1002_00654 0.43 -0.3 710,731 + MIT1002_00654 0.48 -1.3 710,731 - MIT1002_00654 0.48 +0.7 710,832 + MIT1002_00654 0.52 -0.6 710,836 - MIT1002_00654 0.52 +0.2 710,942 + MIT1002_00654 0.57 -3.3 711,044 - MIT1002_00654 0.62 -1.6 711,081 + MIT1002_00654 0.64 +0.3 711,110 - MIT1002_00654 0.65 -2.2 711,150 + MIT1002_00654 0.67 +1.4 711,310 + MIT1002_00654 0.74 +0.3 711,351 + MIT1002_00654 0.76 -0.5 711,351 + MIT1002_00654 0.76 +0.3 711,351 + MIT1002_00654 0.76 +1.3 711,354 - MIT1002_00654 0.76 +0.1 711,357 + MIT1002_00654 0.76 -0.2 711,359 - MIT1002_00654 0.76 -0.4 711,441 + MIT1002_00654 0.80 -0.7 711,446 + MIT1002_00654 0.80 -0.3 711,449 - MIT1002_00654 0.81 +1.5 711,463 + MIT1002_00654 0.81 +0.0 711,503 - MIT1002_00654 0.83 -0.4 711,511 - MIT1002_00654 0.83 +1.3 711,564 + MIT1002_00654 0.86 -1.4 711,591 - MIT1002_00654 0.87 +1.9 711,591 - MIT1002_00654 0.87 +1.8 711,604 - MIT1002_00654 0.88 -1.8 711,663 + -0.6 711,663 + +1.3 711,709 + -0.4 711,709 + +1.2 711,777 + -1.7 711,779 + +0.2 711,789 + +0.5 711,874 + +0.5 712,113 + MIT1002_00655 0.11 -0.4 712,129 - MIT1002_00655 0.13 +1.8 712,139 - MIT1002_00655 0.13 -1.0 712,156 - MIT1002_00655 0.15 +1.0 712,306 + MIT1002_00655 0.26 +0.7 712,306 + MIT1002_00655 0.26 +0.4 712,306 + MIT1002_00655 0.26 +0.7 712,314 - MIT1002_00655 0.26 -0.9 712,333 - MIT1002_00655 0.28 -0.1 712,404 - MIT1002_00655 0.33 +1.0 712,465 + MIT1002_00655 0.37 -1.1 712,580 + MIT1002_00655 0.46 -0.6 712,585 + MIT1002_00655 0.46 -0.3 712,692 + MIT1002_00655 0.54 -0.9 712,702 + MIT1002_00655 0.55 +0.3 712,780 - MIT1002_00655 0.61 +1.3 712,788 + MIT1002_00655 0.61 -1.0 712,788 + MIT1002_00655 0.61 -0.2 712,788 + MIT1002_00655 0.61 +1.0 712,806 + MIT1002_00655 0.63 -0.7 712,817 + MIT1002_00655 0.64 -1.8 712,859 - MIT1002_00655 0.67 +0.5
Or see this region's nucleotide sequence