Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00526

Experiment: monoculture; Experiment B, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00524 and MIT1002_00525 are separated by 186 nucleotidesMIT1002_00525 and MIT1002_00526 are separated by 194 nucleotidesMIT1002_00526 and MIT1002_00527 are separated by 200 nucleotides MIT1002_00524: MIT1002_00524 - hypothetical protein, at 570,111 to 570,656 _00524 MIT1002_00525: MIT1002_00525 - DNA protection during starvation protein 2, at 570,843 to 571,316 _00525 MIT1002_00526: MIT1002_00526 - Soluble aldose sugar dehydrogenase YliI precursor, at 571,511 to 572,692 _00526 MIT1002_00527: MIT1002_00527 - Prolyl tripeptidyl peptidase precursor, at 572,893 to 575,001 _00527 Position (kb) 571 572 573Strain fitness (log2 ratio) -2 -1 0 1 2 3at 570.536 kb on - strand, within MIT1002_00524at 570.549 kb on - strand, within MIT1002_00524at 570.564 kb on + strand, within MIT1002_00524at 570.589 kb on + strand, within MIT1002_00524at 570.604 kb on - strandat 570.719 kb on + strandat 570.826 kb on + strandat 570.828 kb on + strandat 570.834 kb on + strandat 570.842 kb on - strandat 571.007 kb on + strand, within MIT1002_00525at 571.007 kb on + strand, within MIT1002_00525at 571.007 kb on + strand, within MIT1002_00525at 571.007 kb on + strand, within MIT1002_00525at 571.012 kb on + strand, within MIT1002_00525at 571.012 kb on + strand, within MIT1002_00525at 571.015 kb on - strand, within MIT1002_00525at 571.015 kb on - strand, within MIT1002_00525at 571.015 kb on - strand, within MIT1002_00525at 571.074 kb on + strand, within MIT1002_00525at 571.084 kb on + strand, within MIT1002_00525at 571.092 kb on - strand, within MIT1002_00525at 571.092 kb on - strand, within MIT1002_00525at 571.121 kb on + strand, within MIT1002_00525at 571.130 kb on - strand, within MIT1002_00525at 571.205 kb on + strand, within MIT1002_00525at 571.213 kb on - strand, within MIT1002_00525at 571.215 kb on + strand, within MIT1002_00525at 571.235 kb on + strand, within MIT1002_00525at 571.241 kb on - strand, within MIT1002_00525at 571.305 kb on - strandat 571.308 kb on - strandat 571.371 kb on + strandat 571.379 kb on - strandat 571.379 kb on - strandat 571.405 kb on + strandat 571.405 kb on + strandat 571.405 kb on + strandat 571.405 kb on + strandat 571.405 kb on + strandat 571.405 kb on + strandat 571.413 kb on - strandat 571.413 kb on - strandat 571.413 kb on - strandat 571.413 kb on - strandat 571.413 kb on - strandat 571.413 kb on - strandat 571.418 kb on - strandat 571.432 kb on + strandat 571.467 kb on - strandat 571.548 kb on - strandat 571.755 kb on + strand, within MIT1002_00526at 571.758 kb on + strand, within MIT1002_00526at 571.786 kb on - strand, within MIT1002_00526at 571.801 kb on + strand, within MIT1002_00526at 571.804 kb on - strand, within MIT1002_00526at 571.804 kb on - strand, within MIT1002_00526at 571.841 kb on + strand, within MIT1002_00526at 571.846 kb on - strand, within MIT1002_00526at 571.894 kb on - strand, within MIT1002_00526at 571.952 kb on - strand, within MIT1002_00526at 571.954 kb on + strand, within MIT1002_00526at 571.954 kb on + strand, within MIT1002_00526at 571.954 kb on + strand, within MIT1002_00526at 571.954 kb on + strand, within MIT1002_00526at 571.954 kb on + strand, within MIT1002_00526at 571.962 kb on - strand, within MIT1002_00526at 572.069 kb on + strand, within MIT1002_00526at 572.079 kb on - strand, within MIT1002_00526at 572.111 kb on + strand, within MIT1002_00526at 572.169 kb on - strand, within MIT1002_00526at 572.171 kb on + strand, within MIT1002_00526at 572.171 kb on + strand, within MIT1002_00526at 572.179 kb on - strand, within MIT1002_00526at 572.194 kb on + strand, within MIT1002_00526at 572.234 kb on + strand, within MIT1002_00526at 572.242 kb on - strand, within MIT1002_00526at 572.343 kb on + strand, within MIT1002_00526at 572.346 kb on - strand, within MIT1002_00526at 572.353 kb on + strand, within MIT1002_00526at 572.361 kb on + strand, within MIT1002_00526at 572.371 kb on - strand, within MIT1002_00526at 572.457 kb on + strand, within MIT1002_00526at 572.457 kb on + strand, within MIT1002_00526at 572.465 kb on - strand, within MIT1002_00526at 572.499 kb on + strand, within MIT1002_00526at 572.504 kb on + strand, within MIT1002_00526at 572.504 kb on + strand, within MIT1002_00526at 572.573 kb on - strand, within MIT1002_00526at 572.575 kb on + strandat 572.583 kb on - strandat 572.652 kb on + strandat 572.652 kb on + strandat 572.660 kb on - strandat 572.680 kb on - strandat 572.697 kb on + strandat 572.720 kb on - strandat 572.802 kb on - strandat 572.884 kb on + strandat 572.940 kb on - strandat 573.044 kb on + strandat 573.052 kb on - strandat 573.097 kb on + strandat 573.099 kb on + strandat 573.111 kb on + strand, within MIT1002_00527at 573.133 kb on + strand, within MIT1002_00527at 573.133 kb on + strand, within MIT1002_00527at 573.133 kb on + strand, within MIT1002_00527at 573.140 kb on + strand, within MIT1002_00527at 573.141 kb on - strand, within MIT1002_00527at 573.141 kb on - strand, within MIT1002_00527at 573.173 kb on - strand, within MIT1002_00527at 573.267 kb on - strand, within MIT1002_00527at 573.267 kb on - strand, within MIT1002_00527at 573.306 kb on + strand, within MIT1002_00527at 573.312 kb on + strand, within MIT1002_00527at 573.312 kb on + strand, within MIT1002_00527at 573.312 kb on + strand, within MIT1002_00527at 573.362 kb on - strand, within MIT1002_00527at 573.411 kb on - strand, within MIT1002_00527at 573.471 kb on + strand, within MIT1002_00527at 573.476 kb on + strand, within MIT1002_00527at 573.484 kb on - strand, within MIT1002_00527at 573.492 kb on + strand, within MIT1002_00527at 573.502 kb on - strand, within MIT1002_00527at 573.542 kb on - strand, within MIT1002_00527at 573.609 kb on - strand, within MIT1002_00527at 573.618 kb on + strand, within MIT1002_00527at 573.621 kb on - strand, within MIT1002_00527at 573.653 kb on - strand, within MIT1002_00527

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6
remove
570,536 - MIT1002_00524 0.78 -2.6
570,549 - MIT1002_00524 0.80 -1.9
570,564 + MIT1002_00524 0.83 -0.3
570,589 + MIT1002_00524 0.88 +1.4
570,604 - -0.7
570,719 + +1.2
570,826 + -0.8
570,828 + +0.7
570,834 + -1.5
570,842 - +1.4
571,007 + MIT1002_00525 0.35 -0.7
571,007 + MIT1002_00525 0.35 +2.1
571,007 + MIT1002_00525 0.35 +1.2
571,007 + MIT1002_00525 0.35 -1.0
571,012 + MIT1002_00525 0.36 -0.2
571,012 + MIT1002_00525 0.36 -0.3
571,015 - MIT1002_00525 0.36 -0.5
571,015 - MIT1002_00525 0.36 -0.4
571,015 - MIT1002_00525 0.36 -0.3
571,074 + MIT1002_00525 0.49 -1.1
571,084 + MIT1002_00525 0.51 -0.2
571,092 - MIT1002_00525 0.53 +0.7
571,092 - MIT1002_00525 0.53 -0.2
571,121 + MIT1002_00525 0.59 +0.5
571,130 - MIT1002_00525 0.61 -0.3
571,205 + MIT1002_00525 0.76 +0.7
571,213 - MIT1002_00525 0.78 +0.3
571,215 + MIT1002_00525 0.78 +0.1
571,235 + MIT1002_00525 0.83 +0.2
571,241 - MIT1002_00525 0.84 +2.7
571,305 - +2.2
571,308 - -0.4
571,371 + +1.4
571,379 - -1.9
571,379 - -0.6
571,405 + -1.3
571,405 + -0.2
571,405 + +0.1
571,405 + +0.8
571,405 + +0.4
571,405 + +1.4
571,413 - -0.6
571,413 - -0.6
571,413 - -1.1
571,413 - -1.2
571,413 - -0.0
571,413 - +0.5
571,418 - +1.0
571,432 + -0.8
571,467 - -1.1
571,548 - +0.2
571,755 + MIT1002_00526 0.21 -0.3
571,758 + MIT1002_00526 0.21 +0.7
571,786 - MIT1002_00526 0.23 -1.3
571,801 + MIT1002_00526 0.25 -1.9
571,804 - MIT1002_00526 0.25 -0.2
571,804 - MIT1002_00526 0.25 -1.2
571,841 + MIT1002_00526 0.28 +0.3
571,846 - MIT1002_00526 0.28 -1.4
571,894 - MIT1002_00526 0.32 +2.0
571,952 - MIT1002_00526 0.37 +2.1
571,954 + MIT1002_00526 0.37 -0.9
571,954 + MIT1002_00526 0.37 +1.7
571,954 + MIT1002_00526 0.37 +0.8
571,954 + MIT1002_00526 0.37 +0.5
571,954 + MIT1002_00526 0.37 -0.4
571,962 - MIT1002_00526 0.38 +0.1
572,069 + MIT1002_00526 0.47 +1.0
572,079 - MIT1002_00526 0.48 +0.1
572,111 + MIT1002_00526 0.51 -0.6
572,169 - MIT1002_00526 0.56 +1.8
572,171 + MIT1002_00526 0.56 +0.2
572,171 + MIT1002_00526 0.56 -2.0
572,179 - MIT1002_00526 0.57 +0.0
572,194 + MIT1002_00526 0.58 -1.9
572,234 + MIT1002_00526 0.61 -0.3
572,242 - MIT1002_00526 0.62 +1.7
572,343 + MIT1002_00526 0.70 -2.4
572,346 - MIT1002_00526 0.71 +0.4
572,353 + MIT1002_00526 0.71 -0.1
572,361 + MIT1002_00526 0.72 +0.2
572,371 - MIT1002_00526 0.73 +1.3
572,457 + MIT1002_00526 0.80 +0.6
572,457 + MIT1002_00526 0.80 -0.8
572,465 - MIT1002_00526 0.81 +3.1
572,499 + MIT1002_00526 0.84 +1.0
572,504 + MIT1002_00526 0.84 -0.4
572,504 + MIT1002_00526 0.84 +1.2
572,573 - MIT1002_00526 0.90 -0.4
572,575 + +0.2
572,583 - -1.0
572,652 + +2.4
572,652 + -0.3
572,660 - -0.5
572,680 - -0.5
572,697 + -0.4
572,720 - +1.8
572,802 - -0.0
572,884 + -1.1
572,940 - -1.9
573,044 + +0.4
573,052 - +0.4
573,097 + +0.5
573,099 + -1.2
573,111 + MIT1002_00527 0.10 -0.4
573,133 + MIT1002_00527 0.11 -0.2
573,133 + MIT1002_00527 0.11 +1.1
573,133 + MIT1002_00527 0.11 +1.2
573,140 + MIT1002_00527 0.12 -1.2
573,141 - MIT1002_00527 0.12 +0.6
573,141 - MIT1002_00527 0.12 +1.8
573,173 - MIT1002_00527 0.13 +1.4
573,267 - MIT1002_00527 0.18 +1.5
573,267 - MIT1002_00527 0.18 -0.2
573,306 + MIT1002_00527 0.20 +1.2
573,312 + MIT1002_00527 0.20 +0.7
573,312 + MIT1002_00527 0.20 +0.2
573,312 + MIT1002_00527 0.20 -0.0
573,362 - MIT1002_00527 0.22 +1.4
573,411 - MIT1002_00527 0.25 -1.8
573,471 + MIT1002_00527 0.27 -1.2
573,476 + MIT1002_00527 0.28 -0.5
573,484 - MIT1002_00527 0.28 -1.6
573,492 + MIT1002_00527 0.28 -0.8
573,502 - MIT1002_00527 0.29 +0.9
573,542 - MIT1002_00527 0.31 +1.4
573,609 - MIT1002_00527 0.34 -2.1
573,618 + MIT1002_00527 0.34 +0.8
573,621 - MIT1002_00527 0.35 +0.8
573,653 - MIT1002_00527 0.36 -0.3

Or see this region's nucleotide sequence