Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00456

Experiment: monoculture; Experiment B, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00455 and MIT1002_00456 are separated by 311 nucleotidesMIT1002_00456 and MIT1002_00457 are separated by 202 nucleotides MIT1002_00455: MIT1002_00455 - NAD-dependent malic enzyme, at 497,720 to 499,444 _00455 MIT1002_00456: MIT1002_00456 - hypothetical protein, at 499,756 to 500,742 _00456 MIT1002_00457: MIT1002_00457 - Disulfide-bond oxidoreductase YghU, at 500,945 to 501,802 _00457 Position (kb) 499 500 501Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 498.785 kb on - strand, within MIT1002_00455at 498.827 kb on + strand, within MIT1002_00455at 498.936 kb on + strand, within MIT1002_00455at 498.994 kb on + strand, within MIT1002_00455at 499.000 kb on + strand, within MIT1002_00455at 499.028 kb on + strand, within MIT1002_00455at 499.081 kb on + strand, within MIT1002_00455at 499.081 kb on + strand, within MIT1002_00455at 499.086 kb on + strand, within MIT1002_00455at 499.089 kb on - strand, within MIT1002_00455at 499.161 kb on - strand, within MIT1002_00455at 499.172 kb on - strand, within MIT1002_00455at 499.246 kb on + strand, within MIT1002_00455at 499.251 kb on + strand, within MIT1002_00455at 499.254 kb on - strand, within MIT1002_00455at 499.256 kb on + strand, within MIT1002_00455at 499.264 kb on - strand, within MIT1002_00455at 499.264 kb on - strand, within MIT1002_00455at 499.264 kb on - strand, within MIT1002_00455at 499.269 kb on - strand, within MIT1002_00455at 499.324 kb on + strandat 499.324 kb on + strandat 499.324 kb on + strandat 499.324 kb on + strandat 499.332 kb on - strandat 499.332 kb on - strandat 499.391 kb on - strandat 499.412 kb on + strandat 499.455 kb on + strandat 499.470 kb on + strandat 499.478 kb on - strandat 499.483 kb on + strandat 499.503 kb on + strandat 499.534 kb on + strandat 499.552 kb on - strandat 499.578 kb on - strandat 499.749 kb on - strandat 499.755 kb on - strandat 499.887 kb on - strand, within MIT1002_00456at 499.897 kb on - strand, within MIT1002_00456at 499.899 kb on + strand, within MIT1002_00456at 499.905 kb on - strand, within MIT1002_00456at 499.934 kb on + strand, within MIT1002_00456at 499.945 kb on - strand, within MIT1002_00456at 500.076 kb on + strand, within MIT1002_00456at 500.076 kb on - strand, within MIT1002_00456at 500.248 kb on + strand, within MIT1002_00456at 500.256 kb on - strand, within MIT1002_00456at 500.364 kb on - strand, within MIT1002_00456at 500.372 kb on - strand, within MIT1002_00456at 500.374 kb on + strand, within MIT1002_00456at 500.377 kb on - strand, within MIT1002_00456at 500.382 kb on - strand, within MIT1002_00456at 500.458 kb on + strand, within MIT1002_00456at 500.458 kb on + strand, within MIT1002_00456at 500.466 kb on - strand, within MIT1002_00456at 500.508 kb on - strand, within MIT1002_00456at 500.513 kb on - strand, within MIT1002_00456at 500.525 kb on + strand, within MIT1002_00456at 500.542 kb on + strand, within MIT1002_00456at 500.586 kb on + strand, within MIT1002_00456at 500.592 kb on - strand, within MIT1002_00456at 500.663 kb on - strandat 500.687 kb on + strandat 500.732 kb on + strandat 500.740 kb on - strandat 500.772 kb on - strandat 500.779 kb on + strandat 500.867 kb on - strandat 500.881 kb on + strandat 500.906 kb on + strandat 500.906 kb on + strandat 500.909 kb on - strandat 500.936 kb on - strandat 501.026 kb on - strandat 501.032 kb on + strand, within MIT1002_00457at 501.040 kb on - strand, within MIT1002_00457at 501.085 kb on + strand, within MIT1002_00457at 501.086 kb on - strand, within MIT1002_00457at 501.131 kb on + strand, within MIT1002_00457at 501.152 kb on + strand, within MIT1002_00457at 501.152 kb on + strand, within MIT1002_00457at 501.189 kb on + strand, within MIT1002_00457at 501.298 kb on - strand, within MIT1002_00457at 501.434 kb on - strand, within MIT1002_00457at 501.436 kb on + strand, within MIT1002_00457at 501.444 kb on + strand, within MIT1002_00457at 501.444 kb on - strand, within MIT1002_00457at 501.452 kb on - strand, within MIT1002_00457at 501.520 kb on - strand, within MIT1002_00457at 501.541 kb on + strand, within MIT1002_00457at 501.570 kb on - strand, within MIT1002_00457at 501.638 kb on - strand, within MIT1002_00457at 501.645 kb on - strand, within MIT1002_00457at 501.652 kb on - strand, within MIT1002_00457at 501.689 kb on - strand, within MIT1002_00457at 501.707 kb on - strand, within MIT1002_00457at 501.727 kb on + strandat 501.727 kb on + strandat 501.727 kb on + strandat 501.727 kb on + strandat 501.735 kb on - strandat 501.735 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6
remove
498,785 - MIT1002_00455 0.62 -1.4
498,827 + MIT1002_00455 0.64 -1.5
498,936 + MIT1002_00455 0.70 -1.9
498,994 + MIT1002_00455 0.74 +2.4
499,000 + MIT1002_00455 0.74 -0.5
499,028 + MIT1002_00455 0.76 -2.9
499,081 + MIT1002_00455 0.79 +1.4
499,081 + MIT1002_00455 0.79 +1.0
499,086 + MIT1002_00455 0.79 -2.3
499,089 - MIT1002_00455 0.79 +1.2
499,161 - MIT1002_00455 0.84 +1.7
499,172 - MIT1002_00455 0.84 -0.3
499,246 + MIT1002_00455 0.88 +0.7
499,251 + MIT1002_00455 0.89 +0.8
499,254 - MIT1002_00455 0.89 -1.0
499,256 + MIT1002_00455 0.89 +1.4
499,264 - MIT1002_00455 0.90 -0.1
499,264 - MIT1002_00455 0.90 +1.0
499,264 - MIT1002_00455 0.90 -0.1
499,269 - MIT1002_00455 0.90 -0.3
499,324 + -0.3
499,324 + +0.3
499,324 + -1.1
499,324 + -0.1
499,332 - -0.0
499,332 - +1.2
499,391 - -1.5
499,412 + -0.4
499,455 + +3.2
499,470 + -1.6
499,478 - +0.9
499,483 + -0.1
499,503 + +1.4
499,534 + -0.0
499,552 - -0.5
499,578 - -0.3
499,749 - +0.1
499,755 - +1.1
499,887 - MIT1002_00456 0.13 -1.6
499,897 - MIT1002_00456 0.14 +1.2
499,899 + MIT1002_00456 0.14 -1.7
499,905 - MIT1002_00456 0.15 -1.4
499,934 + MIT1002_00456 0.18 +1.3
499,945 - MIT1002_00456 0.19 -0.8
500,076 + MIT1002_00456 0.32 +0.7
500,076 - MIT1002_00456 0.32 +0.4
500,248 + MIT1002_00456 0.50 +0.7
500,256 - MIT1002_00456 0.51 +0.1
500,364 - MIT1002_00456 0.62 -1.6
500,372 - MIT1002_00456 0.62 -1.6
500,374 + MIT1002_00456 0.63 +0.4
500,377 - MIT1002_00456 0.63 +0.0
500,382 - MIT1002_00456 0.63 +2.0
500,458 + MIT1002_00456 0.71 -0.0
500,458 + MIT1002_00456 0.71 -0.7
500,466 - MIT1002_00456 0.72 +0.6
500,508 - MIT1002_00456 0.76 +0.7
500,513 - MIT1002_00456 0.77 -0.5
500,525 + MIT1002_00456 0.78 +0.2
500,542 + MIT1002_00456 0.80 -1.1
500,586 + MIT1002_00456 0.84 +0.4
500,592 - MIT1002_00456 0.85 -1.2
500,663 - +0.7
500,687 + +1.5
500,732 + +1.2
500,740 - +0.3
500,772 - -1.0
500,779 + +0.6
500,867 - +1.0
500,881 + +1.4
500,906 + +0.4
500,906 + +0.8
500,909 - +0.5
500,936 - -1.3
501,026 - +1.4
501,032 + MIT1002_00457 0.10 +1.0
501,040 - MIT1002_00457 0.11 +2.0
501,085 + MIT1002_00457 0.16 -2.3
501,086 - MIT1002_00457 0.16 +0.6
501,131 + MIT1002_00457 0.22 -0.6
501,152 + MIT1002_00457 0.24 -0.4
501,152 + MIT1002_00457 0.24 -1.5
501,189 + MIT1002_00457 0.28 +1.9
501,298 - MIT1002_00457 0.41 +0.5
501,434 - MIT1002_00457 0.57 +1.5
501,436 + MIT1002_00457 0.57 +0.2
501,444 + MIT1002_00457 0.58 -0.5
501,444 - MIT1002_00457 0.58 +1.7
501,452 - MIT1002_00457 0.59 +0.2
501,520 - MIT1002_00457 0.67 -0.8
501,541 + MIT1002_00457 0.69 -0.5
501,570 - MIT1002_00457 0.73 -1.6
501,638 - MIT1002_00457 0.81 +0.8
501,645 - MIT1002_00457 0.82 -0.2
501,652 - MIT1002_00457 0.82 -1.7
501,689 - MIT1002_00457 0.87 +1.4
501,707 - MIT1002_00457 0.89 -0.0
501,727 + -0.3
501,727 + -1.0
501,727 + +0.3
501,727 + +0.9
501,735 - -0.1
501,735 - -0.3

Or see this region's nucleotide sequence