Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00426

Experiment: monoculture; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00425 and MIT1002_00426 overlap by 1 nucleotidesMIT1002_00426 and MIT1002_00427 are separated by 165 nucleotides MIT1002_00425: MIT1002_00425 - Cation efflux system protein CzcB, at 459,675 to 460,814 _00425 MIT1002_00426: MIT1002_00426 - Cation efflux system protein CzcA, at 460,814 to 463,960 _00426 MIT1002_00427: MIT1002_00427 - hypothetical protein, at 464,126 to 464,809 _00427 Position (kb) 460 461 462 463 464Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 459.827 kb on + strand, within MIT1002_00425at 459.981 kb on + strand, within MIT1002_00425at 459.981 kb on + strand, within MIT1002_00425at 459.989 kb on - strand, within MIT1002_00425at 459.989 kb on - strand, within MIT1002_00425at 459.989 kb on - strand, within MIT1002_00425at 460.115 kb on + strand, within MIT1002_00425at 460.153 kb on + strand, within MIT1002_00425at 460.161 kb on - strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.442 kb on + strand, within MIT1002_00425at 460.450 kb on - strand, within MIT1002_00425at 460.510 kb on + strand, within MIT1002_00425at 460.556 kb on + strand, within MIT1002_00425at 460.600 kb on - strand, within MIT1002_00425at 460.661 kb on - strand, within MIT1002_00425at 460.661 kb on - strand, within MIT1002_00425at 460.751 kb on + strandat 460.754 kb on - strandat 460.775 kb on - strandat 460.786 kb on - strandat 460.793 kb on + strandat 460.808 kb on + strandat 460.852 kb on + strandat 461.137 kb on - strand, within MIT1002_00426at 461.147 kb on - strand, within MIT1002_00426at 461.170 kb on - strand, within MIT1002_00426at 461.198 kb on + strand, within MIT1002_00426at 461.318 kb on - strand, within MIT1002_00426at 461.375 kb on + strand, within MIT1002_00426at 461.438 kb on - strand, within MIT1002_00426at 461.438 kb on - strand, within MIT1002_00426at 461.458 kb on - strand, within MIT1002_00426at 461.492 kb on - strand, within MIT1002_00426at 461.515 kb on + strand, within MIT1002_00426at 461.515 kb on + strand, within MIT1002_00426at 461.523 kb on - strand, within MIT1002_00426at 461.523 kb on - strand, within MIT1002_00426at 461.583 kb on + strand, within MIT1002_00426at 461.609 kb on + strand, within MIT1002_00426at 461.631 kb on - strand, within MIT1002_00426at 461.671 kb on - strand, within MIT1002_00426at 461.736 kb on + strand, within MIT1002_00426at 461.744 kb on - strand, within MIT1002_00426at 461.782 kb on - strand, within MIT1002_00426at 461.884 kb on - strand, within MIT1002_00426at 461.923 kb on + strand, within MIT1002_00426at 461.923 kb on + strand, within MIT1002_00426at 461.931 kb on - strand, within MIT1002_00426at 461.931 kb on - strand, within MIT1002_00426at 461.969 kb on + strand, within MIT1002_00426at 462.226 kb on - strand, within MIT1002_00426at 462.314 kb on - strand, within MIT1002_00426at 462.390 kb on + strand, within MIT1002_00426at 462.399 kb on + strand, within MIT1002_00426at 462.406 kb on + strand, within MIT1002_00426at 462.560 kb on + strand, within MIT1002_00426at 462.560 kb on + strand, within MIT1002_00426at 462.568 kb on - strand, within MIT1002_00426at 462.678 kb on + strand, within MIT1002_00426at 462.678 kb on + strand, within MIT1002_00426at 462.686 kb on - strand, within MIT1002_00426at 462.748 kb on + strand, within MIT1002_00426at 462.792 kb on - strand, within MIT1002_00426at 462.854 kb on - strand, within MIT1002_00426at 462.854 kb on - strand, within MIT1002_00426at 462.905 kb on - strand, within MIT1002_00426at 462.920 kb on + strand, within MIT1002_00426at 463.031 kb on + strand, within MIT1002_00426at 463.034 kb on - strand, within MIT1002_00426at 463.040 kb on + strand, within MIT1002_00426at 463.047 kb on + strand, within MIT1002_00426at 463.120 kb on - strand, within MIT1002_00426at 463.122 kb on + strand, within MIT1002_00426at 463.127 kb on + strand, within MIT1002_00426at 463.144 kb on + strand, within MIT1002_00426at 463.149 kb on + strand, within MIT1002_00426at 463.157 kb on - strand, within MIT1002_00426at 463.271 kb on + strand, within MIT1002_00426at 463.343 kb on - strand, within MIT1002_00426at 463.434 kb on + strand, within MIT1002_00426at 463.442 kb on - strand, within MIT1002_00426at 463.442 kb on - strand, within MIT1002_00426at 463.470 kb on + strand, within MIT1002_00426at 463.473 kb on + strand, within MIT1002_00426at 463.577 kb on - strand, within MIT1002_00426at 463.582 kb on - strand, within MIT1002_00426at 463.583 kb on - strand, within MIT1002_00426at 463.583 kb on - strand, within MIT1002_00426at 463.617 kb on + strand, within MIT1002_00426at 463.617 kb on + strand, within MIT1002_00426at 463.618 kb on + strand, within MIT1002_00426at 463.646 kb on - strandat 463.702 kb on + strandat 463.702 kb on + strandat 463.710 kb on - strandat 463.710 kb on - strandat 463.824 kb on - strandat 463.853 kb on + strandat 463.853 kb on + strandat 463.861 kb on - strandat 463.886 kb on - strandat 464.067 kb on + strandat 464.188 kb on - strandat 464.190 kb on + strandat 464.195 kb on + strand, within MIT1002_00427at 464.203 kb on - strand, within MIT1002_00427at 464.203 kb on - strand, within MIT1002_00427at 464.205 kb on + strand, within MIT1002_00427at 464.205 kb on + strand, within MIT1002_00427at 464.208 kb on - strand, within MIT1002_00427at 464.225 kb on + strand, within MIT1002_00427at 464.233 kb on - strand, within MIT1002_00427at 464.262 kb on - strand, within MIT1002_00427at 464.278 kb on + strand, within MIT1002_00427at 464.351 kb on + strand, within MIT1002_00427at 464.386 kb on - strand, within MIT1002_00427at 464.408 kb on + strand, within MIT1002_00427at 464.416 kb on - strand, within MIT1002_00427at 464.427 kb on + strand, within MIT1002_00427at 464.441 kb on - strand, within MIT1002_00427at 464.539 kb on - strand, within MIT1002_00427at 464.576 kb on + strand, within MIT1002_00427at 464.599 kb on - strand, within MIT1002_00427at 464.664 kb on - strand, within MIT1002_00427at 464.749 kb on - strandat 464.751 kb on - strandat 464.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6
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459,827 + MIT1002_00425 0.13 -0.7
459,981 + MIT1002_00425 0.27 -0.4
459,981 + MIT1002_00425 0.27 -0.5
459,989 - MIT1002_00425 0.28 -1.1
459,989 - MIT1002_00425 0.28 -1.9
459,989 - MIT1002_00425 0.28 +1.5
460,115 + MIT1002_00425 0.39 +0.9
460,153 + MIT1002_00425 0.42 +0.7
460,161 - MIT1002_00425 0.43 +0.5
460,442 + MIT1002_00425 0.67 -0.3
460,442 + MIT1002_00425 0.67 +0.7
460,442 + MIT1002_00425 0.67 +0.5
460,442 + MIT1002_00425 0.67 -0.1
460,442 + MIT1002_00425 0.67 +0.2
460,442 + MIT1002_00425 0.67 -1.0
460,450 - MIT1002_00425 0.68 +1.0
460,510 + MIT1002_00425 0.73 -0.1
460,556 + MIT1002_00425 0.77 +1.4
460,600 - MIT1002_00425 0.81 +0.5
460,661 - MIT1002_00425 0.86 -1.8
460,661 - MIT1002_00425 0.86 -0.8
460,751 + -0.5
460,754 - -0.7
460,775 - -2.0
460,786 - -2.0
460,793 + +0.2
460,808 + -0.3
460,852 + -0.6
461,137 - MIT1002_00426 0.10 -0.4
461,147 - MIT1002_00426 0.11 +0.3
461,170 - MIT1002_00426 0.11 +1.7
461,198 + MIT1002_00426 0.12 +1.2
461,318 - MIT1002_00426 0.16 -0.8
461,375 + MIT1002_00426 0.18 +1.1
461,438 - MIT1002_00426 0.20 -0.1
461,438 - MIT1002_00426 0.20 +0.6
461,458 - MIT1002_00426 0.20 -3.0
461,492 - MIT1002_00426 0.22 -0.2
461,515 + MIT1002_00426 0.22 -1.5
461,515 + MIT1002_00426 0.22 -0.4
461,523 - MIT1002_00426 0.23 -2.1
461,523 - MIT1002_00426 0.23 -0.1
461,583 + MIT1002_00426 0.24 -2.3
461,609 + MIT1002_00426 0.25 -0.3
461,631 - MIT1002_00426 0.26 -0.1
461,671 - MIT1002_00426 0.27 -0.6
461,736 + MIT1002_00426 0.29 -0.6
461,744 - MIT1002_00426 0.30 +2.2
461,782 - MIT1002_00426 0.31 -1.1
461,884 - MIT1002_00426 0.34 -0.4
461,923 + MIT1002_00426 0.35 -0.4
461,923 + MIT1002_00426 0.35 +2.6
461,931 - MIT1002_00426 0.35 -0.4
461,931 - MIT1002_00426 0.35 +1.4
461,969 + MIT1002_00426 0.37 -1.7
462,226 - MIT1002_00426 0.45 +0.3
462,314 - MIT1002_00426 0.48 -0.3
462,390 + MIT1002_00426 0.50 -0.4
462,399 + MIT1002_00426 0.50 -0.4
462,406 + MIT1002_00426 0.51 -1.0
462,560 + MIT1002_00426 0.55 +1.3
462,560 + MIT1002_00426 0.55 +0.5
462,568 - MIT1002_00426 0.56 -0.5
462,678 + MIT1002_00426 0.59 -0.5
462,678 + MIT1002_00426 0.59 +0.7
462,686 - MIT1002_00426 0.59 +1.2
462,748 + MIT1002_00426 0.61 -0.3
462,792 - MIT1002_00426 0.63 -2.7
462,854 - MIT1002_00426 0.65 -1.9
462,854 - MIT1002_00426 0.65 -1.3
462,905 - MIT1002_00426 0.66 -2.4
462,920 + MIT1002_00426 0.67 -0.5
463,031 + MIT1002_00426 0.70 -0.1
463,034 - MIT1002_00426 0.71 -0.6
463,040 + MIT1002_00426 0.71 -0.4
463,047 + MIT1002_00426 0.71 +1.7
463,120 - MIT1002_00426 0.73 -0.1
463,122 + MIT1002_00426 0.73 -0.4
463,127 + MIT1002_00426 0.73 -1.4
463,144 + MIT1002_00426 0.74 +0.7
463,149 + MIT1002_00426 0.74 +1.2
463,157 - MIT1002_00426 0.74 -2.6
463,271 + MIT1002_00426 0.78 +0.0
463,343 - MIT1002_00426 0.80 -0.6
463,434 + MIT1002_00426 0.83 -0.5
463,442 - MIT1002_00426 0.84 -0.5
463,442 - MIT1002_00426 0.84 +0.4
463,470 + MIT1002_00426 0.84 -1.1
463,473 + MIT1002_00426 0.84 -1.9
463,577 - MIT1002_00426 0.88 -0.0
463,582 - MIT1002_00426 0.88 -1.4
463,583 - MIT1002_00426 0.88 -0.5
463,583 - MIT1002_00426 0.88 +0.7
463,617 + MIT1002_00426 0.89 -1.8
463,617 + MIT1002_00426 0.89 -0.4
463,618 + MIT1002_00426 0.89 -0.8
463,646 - +2.8
463,702 + -0.5
463,702 + +1.1
463,710 - -1.0
463,710 - -1.6
463,824 - -0.9
463,853 + -1.3
463,853 + +0.7
463,861 - +0.9
463,886 - -1.1
464,067 + +0.3
464,188 - -0.1
464,190 + -2.0
464,195 + MIT1002_00427 0.10 +0.2
464,203 - MIT1002_00427 0.11 +0.3
464,203 - MIT1002_00427 0.11 +0.4
464,205 + MIT1002_00427 0.12 +2.0
464,205 + MIT1002_00427 0.12 +0.2
464,208 - MIT1002_00427 0.12 -0.4
464,225 + MIT1002_00427 0.14 +0.2
464,233 - MIT1002_00427 0.16 +0.9
464,262 - MIT1002_00427 0.20 -1.2
464,278 + MIT1002_00427 0.22 +1.0
464,351 + MIT1002_00427 0.33 +0.5
464,386 - MIT1002_00427 0.38 -3.6
464,408 + MIT1002_00427 0.41 -0.2
464,416 - MIT1002_00427 0.42 -0.9
464,427 + MIT1002_00427 0.44 -1.7
464,441 - MIT1002_00427 0.46 -1.2
464,539 - MIT1002_00427 0.60 -0.7
464,576 + MIT1002_00427 0.66 -1.6
464,599 - MIT1002_00427 0.69 -0.8
464,664 - MIT1002_00427 0.79 -1.4
464,749 - +0.4
464,751 - +0.1
464,803 - +1.0

Or see this region's nucleotide sequence