Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00323

Experiment: monoculture; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00321 and MIT1002_00322 are separated by 96 nucleotidesMIT1002_00322 and MIT1002_00323 are separated by 8 nucleotidesMIT1002_00323 and MIT1002_00324 are separated by 175 nucleotides MIT1002_00321: MIT1002_00321 - Copper resistance protein CopC, at 348,801 to 349,154 _00321 MIT1002_00322: MIT1002_00322 - transposase/IS protein, at 349,251 to 349,997 _00322 MIT1002_00323: MIT1002_00323 - Transposase, at 350,006 to 351,544 _00323 MIT1002_00324: MIT1002_00324 - Putative copper export protein, at 351,720 to 352,646 _00324 Position (kb) 350 351 352Strain fitness (log2 ratio) -2 -1 0 1 2at 349.047 kb on + strand, within MIT1002_00321at 349.055 kb on - strand, within MIT1002_00321at 349.067 kb on - strand, within MIT1002_00321at 349.074 kb on + strand, within MIT1002_00321at 349.113 kb on - strand, within MIT1002_00321at 349.118 kb on - strand, within MIT1002_00321at 349.359 kb on - strand, within MIT1002_00322at 349.377 kb on - strand, within MIT1002_00322at 349.453 kb on + strand, within MIT1002_00322at 349.546 kb on - strand, within MIT1002_00322at 349.546 kb on - strand, within MIT1002_00322at 349.630 kb on + strand, within MIT1002_00322at 349.692 kb on - strand, within MIT1002_00322at 349.703 kb on + strand, within MIT1002_00322at 350.044 kb on - strandat 350.073 kb on - strandat 350.108 kb on + strandat 350.126 kb on + strandat 350.133 kb on + strandat 350.181 kb on - strand, within MIT1002_00323at 350.186 kb on - strand, within MIT1002_00323at 350.216 kb on + strand, within MIT1002_00323at 350.224 kb on - strand, within MIT1002_00323at 350.231 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.263 kb on + strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.271 kb on - strand, within MIT1002_00323at 350.281 kb on - strand, within MIT1002_00323at 350.319 kb on + strand, within MIT1002_00323at 350.322 kb on - strand, within MIT1002_00323at 350.327 kb on - strand, within MIT1002_00323at 350.327 kb on - strand, within MIT1002_00323at 350.332 kb on + strand, within MIT1002_00323at 351.761 kb on - strandat 351.775 kb on + strandat 351.775 kb on + strandat 351.877 kb on - strand, within MIT1002_00324at 351.901 kb on + strand, within MIT1002_00324at 351.909 kb on - strand, within MIT1002_00324at 351.909 kb on - strand, within MIT1002_00324at 351.909 kb on - strand, within MIT1002_00324at 351.909 kb on - strand, within MIT1002_00324at 351.937 kb on - strand, within MIT1002_00324at 351.959 kb on + strand, within MIT1002_00324at 351.987 kb on - strand, within MIT1002_00324at 351.994 kb on + strand, within MIT1002_00324at 351.994 kb on + strand, within MIT1002_00324at 352.011 kb on - strand, within MIT1002_00324at 352.020 kb on + strand, within MIT1002_00324at 352.020 kb on + strand, within MIT1002_00324at 352.055 kb on - strand, within MIT1002_00324at 352.057 kb on - strand, within MIT1002_00324at 352.064 kb on + strand, within MIT1002_00324at 352.111 kb on + strand, within MIT1002_00324at 352.129 kb on + strand, within MIT1002_00324at 352.129 kb on + strand, within MIT1002_00324at 352.129 kb on + strand, within MIT1002_00324at 352.130 kb on + strand, within MIT1002_00324at 352.169 kb on + strand, within MIT1002_00324at 352.169 kb on + strand, within MIT1002_00324at 352.177 kb on - strand, within MIT1002_00324at 352.299 kb on + strand, within MIT1002_00324at 352.337 kb on + strand, within MIT1002_00324at 352.384 kb on - strand, within MIT1002_00324at 352.424 kb on + strand, within MIT1002_00324at 352.435 kb on - strand, within MIT1002_00324at 352.466 kb on - strand, within MIT1002_00324at 352.470 kb on + strand, within MIT1002_00324

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6
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349,047 + MIT1002_00321 0.69 +0.0
349,055 - MIT1002_00321 0.72 +0.5
349,067 - MIT1002_00321 0.75 -0.4
349,074 + MIT1002_00321 0.77 -0.9
349,113 - MIT1002_00321 0.88 +2.0
349,118 - MIT1002_00321 0.90 +2.6
349,359 - MIT1002_00322 0.14 -0.4
349,377 - MIT1002_00322 0.17 -1.8
349,453 + MIT1002_00322 0.27 +0.6
349,546 - MIT1002_00322 0.39 +1.0
349,546 - MIT1002_00322 0.39 +0.3
349,630 + MIT1002_00322 0.51 -1.7
349,692 - MIT1002_00322 0.59 -1.1
349,703 + MIT1002_00322 0.61 +0.4
350,044 - -0.9
350,073 - +0.3
350,108 + -0.9
350,126 + +0.1
350,133 + +0.1
350,181 - MIT1002_00323 0.11 -1.6
350,186 - MIT1002_00323 0.12 -0.7
350,216 + MIT1002_00323 0.14 +2.1
350,224 - MIT1002_00323 0.14 -1.1
350,231 + MIT1002_00323 0.15 -0.1
350,263 + MIT1002_00323 0.17 +0.4
350,263 + MIT1002_00323 0.17 +1.3
350,263 + MIT1002_00323 0.17 -0.1
350,263 + MIT1002_00323 0.17 -0.0
350,263 + MIT1002_00323 0.17 +0.9
350,263 + MIT1002_00323 0.17 -1.2
350,263 + MIT1002_00323 0.17 +1.2
350,263 + MIT1002_00323 0.17 +1.6
350,263 + MIT1002_00323 0.17 -0.2
350,263 + MIT1002_00323 0.17 -0.8
350,263 + MIT1002_00323 0.17 -0.6
350,263 + MIT1002_00323 0.17 -0.1
350,263 + MIT1002_00323 0.17 -1.6
350,263 + MIT1002_00323 0.17 +0.3
350,263 + MIT1002_00323 0.17 -1.5
350,263 + MIT1002_00323 0.17 +0.8
350,263 + MIT1002_00323 0.17 +0.9
350,263 + MIT1002_00323 0.17 +0.7
350,263 + MIT1002_00323 0.17 -2.3
350,263 + MIT1002_00323 0.17 +0.5
350,263 + MIT1002_00323 0.17 -0.0
350,271 - MIT1002_00323 0.17 -0.3
350,271 - MIT1002_00323 0.17 +0.5
350,271 - MIT1002_00323 0.17 -0.2
350,271 - MIT1002_00323 0.17 -0.6
350,271 - MIT1002_00323 0.17 -1.6
350,271 - MIT1002_00323 0.17 +0.3
350,271 - MIT1002_00323 0.17 -1.6
350,271 - MIT1002_00323 0.17 -2.5
350,271 - MIT1002_00323 0.17 +0.4
350,271 - MIT1002_00323 0.17 +1.0
350,271 - MIT1002_00323 0.17 +1.5
350,271 - MIT1002_00323 0.17 +1.2
350,271 - MIT1002_00323 0.17 +2.4
350,271 - MIT1002_00323 0.17 -1.6
350,271 - MIT1002_00323 0.17 +0.3
350,271 - MIT1002_00323 0.17 -1.8
350,281 - MIT1002_00323 0.18 -0.7
350,319 + MIT1002_00323 0.20 +0.5
350,322 - MIT1002_00323 0.21 -0.8
350,327 - MIT1002_00323 0.21 -0.9
350,327 - MIT1002_00323 0.21 +0.6
350,332 + MIT1002_00323 0.21 +1.0
351,761 - -0.8
351,775 + -0.7
351,775 + -1.0
351,877 - MIT1002_00324 0.17 -0.2
351,901 + MIT1002_00324 0.20 +0.3
351,909 - MIT1002_00324 0.20 +1.6
351,909 - MIT1002_00324 0.20 +0.2
351,909 - MIT1002_00324 0.20 +0.2
351,909 - MIT1002_00324 0.20 -0.4
351,937 - MIT1002_00324 0.23 -1.2
351,959 + MIT1002_00324 0.26 -0.8
351,987 - MIT1002_00324 0.29 -0.4
351,994 + MIT1002_00324 0.30 +0.3
351,994 + MIT1002_00324 0.30 +2.3
352,011 - MIT1002_00324 0.31 -2.3
352,020 + MIT1002_00324 0.32 +0.3
352,020 + MIT1002_00324 0.32 +1.2
352,055 - MIT1002_00324 0.36 +0.1
352,057 - MIT1002_00324 0.36 +1.5
352,064 + MIT1002_00324 0.37 -1.4
352,111 + MIT1002_00324 0.42 -0.7
352,129 + MIT1002_00324 0.44 +0.5
352,129 + MIT1002_00324 0.44 +0.6
352,129 + MIT1002_00324 0.44 -0.4
352,130 + MIT1002_00324 0.44 -0.0
352,169 + MIT1002_00324 0.48 -0.6
352,169 + MIT1002_00324 0.48 +0.2
352,177 - MIT1002_00324 0.49 -0.9
352,299 + MIT1002_00324 0.62 -0.8
352,337 + MIT1002_00324 0.67 +1.4
352,384 - MIT1002_00324 0.72 +1.0
352,424 + MIT1002_00324 0.76 -2.2
352,435 - MIT1002_00324 0.77 +1.0
352,466 - MIT1002_00324 0.80 +0.4
352,470 + MIT1002_00324 0.81 +0.5

Or see this region's nucleotide sequence