Experiment: monoculture; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00299 and MIT1002_00300 are separated by 283 nucleotides MIT1002_00300 and MIT1002_00301 are separated by 216 nucleotides MIT1002_00301 and MIT1002_00302 overlap by 13 nucleotides
MIT1002_00299: MIT1002_00299 - Cadmium, cobalt and zinc/H(+)-K(+) antiporter, at 324,306 to 325,184
_00299
MIT1002_00300: MIT1002_00300 - hypothetical protein, at 325,468 to 325,710
_00300
MIT1002_00301: MIT1002_00301 - Diacylglycerol kinase, at 325,927 to 326,334
_00301
MIT1002_00302: MIT1002_00302 - Phosphoethanolamine transferase EptA, at 326,322 to 327,929
_00302
Position (kb) 325
326 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 324.484 kb on + strand, within MIT1002_00299 at 324.484 kb on + strand, within MIT1002_00299 at 324.484 kb on + strand, within MIT1002_00299 at 324.492 kb on - strand, within MIT1002_00299 at 324.532 kb on - strand, within MIT1002_00299 at 324.615 kb on + strand, within MIT1002_00299 at 324.615 kb on + strand, within MIT1002_00299 at 324.615 kb on + strand, within MIT1002_00299 at 324.637 kb on + strand, within MIT1002_00299 at 324.675 kb on + strand, within MIT1002_00299 at 324.683 kb on + strand, within MIT1002_00299 at 324.683 kb on - strand, within MIT1002_00299 at 324.685 kb on + strand, within MIT1002_00299 at 324.685 kb on + strand, within MIT1002_00299 at 324.685 kb on + strand, within MIT1002_00299 at 324.685 kb on + strand, within MIT1002_00299 at 324.685 kb on + strand, within MIT1002_00299 at 324.685 kb on + strand, within MIT1002_00299 at 324.685 kb on + strand, within MIT1002_00299 at 324.685 kb on + strand, within MIT1002_00299 at 324.693 kb on - strand, within MIT1002_00299 at 324.693 kb on - strand, within MIT1002_00299 at 324.693 kb on - strand, within MIT1002_00299 at 324.693 kb on - strand, within MIT1002_00299 at 324.693 kb on - strand, within MIT1002_00299 at 324.693 kb on - strand, within MIT1002_00299 at 324.693 kb on - strand, within MIT1002_00299 at 324.695 kb on + strand, within MIT1002_00299 at 324.698 kb on - strand, within MIT1002_00299 at 324.703 kb on - strand, within MIT1002_00299 at 324.732 kb on + strand, within MIT1002_00299 at 324.732 kb on + strand, within MIT1002_00299 at 324.732 kb on + strand, within MIT1002_00299 at 324.732 kb on + strand, within MIT1002_00299 at 324.732 kb on + strand, within MIT1002_00299 at 324.732 kb on + strand, within MIT1002_00299 at 324.732 kb on + strand, within MIT1002_00299 at 324.732 kb on + strand, within MIT1002_00299 at 324.740 kb on - strand, within MIT1002_00299 at 324.740 kb on - strand, within MIT1002_00299 at 324.767 kb on - strand, within MIT1002_00299 at 324.767 kb on - strand, within MIT1002_00299 at 324.814 kb on + strand, within MIT1002_00299 at 324.822 kb on - strand, within MIT1002_00299 at 324.827 kb on - strand, within MIT1002_00299 at 324.828 kb on - strand, within MIT1002_00299 at 324.829 kb on + strand, within MIT1002_00299 at 324.829 kb on + strand, within MIT1002_00299 at 324.837 kb on - strand, within MIT1002_00299 at 324.844 kb on + strand, within MIT1002_00299 at 324.844 kb on + strand, within MIT1002_00299 at 324.844 kb on + strand, within MIT1002_00299 at 324.844 kb on + strand, within MIT1002_00299 at 324.844 kb on + strand, within MIT1002_00299 at 324.844 kb on + strand, within MIT1002_00299 at 324.844 kb on + strand, within MIT1002_00299 at 324.852 kb on - strand, within MIT1002_00299 at 324.852 kb on - strand, within MIT1002_00299 at 324.852 kb on - strand, within MIT1002_00299 at 324.852 kb on - strand, within MIT1002_00299 at 324.936 kb on + strand, within MIT1002_00299 at 324.946 kb on + strand, within MIT1002_00299 at 324.948 kb on + strand, within MIT1002_00299 at 324.953 kb on + strand, within MIT1002_00299 at 324.954 kb on - strand, within MIT1002_00299 at 324.961 kb on + strand, within MIT1002_00299 at 324.961 kb on + strand, within MIT1002_00299 at 324.964 kb on - strand, within MIT1002_00299 at 324.964 kb on - strand, within MIT1002_00299 at 324.964 kb on - strand, within MIT1002_00299 at 324.969 kb on - strand, within MIT1002_00299 at 324.970 kb on + strand, within MIT1002_00299 at 324.970 kb on + strand, within MIT1002_00299 at 324.970 kb on + strand, within MIT1002_00299 at 324.970 kb on + strand, within MIT1002_00299 at 324.970 kb on + strand, within MIT1002_00299 at 324.978 kb on - strand, within MIT1002_00299 at 324.978 kb on - strand, within MIT1002_00299 at 324.978 kb on - strand, within MIT1002_00299 at 324.978 kb on - strand, within MIT1002_00299 at 324.978 kb on - strand, within MIT1002_00299 at 324.980 kb on - strand, within MIT1002_00299 at 324.980 kb on - strand, within MIT1002_00299 at 325.014 kb on + strand, within MIT1002_00299 at 325.016 kb on + strand, within MIT1002_00299 at 325.016 kb on + strand, within MIT1002_00299 at 325.037 kb on + strand, within MIT1002_00299 at 325.038 kb on - strand, within MIT1002_00299 at 325.045 kb on - strand, within MIT1002_00299 at 325.047 kb on + strand, within MIT1002_00299 at 325.047 kb on + strand, within MIT1002_00299 at 325.047 kb on + strand, within MIT1002_00299 at 325.047 kb on + strand, within MIT1002_00299 at 325.049 kb on + strand, within MIT1002_00299 at 325.049 kb on + strand, within MIT1002_00299 at 325.049 kb on + strand, within MIT1002_00299 at 325.049 kb on + strand, within MIT1002_00299 at 325.049 kb on + strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.057 kb on - strand, within MIT1002_00299 at 325.057 kb on - strand, within MIT1002_00299 at 325.057 kb on - strand, within MIT1002_00299 at 325.057 kb on - strand, within MIT1002_00299 at 325.057 kb on - strand, within MIT1002_00299 at 325.116 kb on - strand at 325.127 kb on - strand at 325.127 kb on - strand at 325.131 kb on + strand at 325.131 kb on + strand at 325.132 kb on - strand at 325.138 kb on - strand at 325.140 kb on - strand at 325.150 kb on - strand at 325.154 kb on + strand at 325.157 kb on - strand at 325.164 kb on - strand at 325.277 kb on - strand at 325.286 kb on - strand at 325.308 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.356 kb on + strand at 325.357 kb on - strand at 325.364 kb on - strand at 325.379 kb on + strand at 325.390 kb on + strand at 325.390 kb on + strand at 325.391 kb on + strand at 325.392 kb on + strand at 325.393 kb on - strand at 325.399 kb on - strand at 325.400 kb on - strand at 325.404 kb on + strand at 325.404 kb on + strand at 325.411 kb on - strand at 325.412 kb on - strand at 325.432 kb on + strand at 325.504 kb on - strand, within MIT1002_00300 at 325.549 kb on - strand, within MIT1002_00300 at 325.633 kb on - strand, within MIT1002_00300 at 325.635 kb on - strand, within MIT1002_00300 at 325.733 kb on + strand at 325.733 kb on + strand at 325.738 kb on + strand at 325.739 kb on + strand at 325.739 kb on + strand at 325.772 kb on - strand at 325.773 kb on - strand at 325.802 kb on + strand at 325.857 kb on - strand at 325.867 kb on + strand at 325.876 kb on + strand at 325.880 kb on + strand at 325.882 kb on + strand at 325.887 kb on + strand at 325.890 kb on - strand at 325.890 kb on - strand at 325.892 kb on + strand at 325.892 kb on + strand at 325.892 kb on + strand at 325.892 kb on + strand at 325.894 kb on + strand at 325.895 kb on - strand at 325.895 kb on - strand at 325.900 kb on - strand at 325.908 kb on - strand at 325.927 kb on - strand at 325.942 kb on - strand at 325.950 kb on - strand at 325.952 kb on + strand at 325.952 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.960 kb on - strand at 325.960 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.999 kb on + strand, within MIT1002_00301 at 325.999 kb on + strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.017 kb on + strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.050 kb on + strand, within MIT1002_00301 at 326.057 kb on - strand, within MIT1002_00301 at 326.057 kb on - strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.111 kb on - strand, within MIT1002_00301 at 326.111 kb on - strand, within MIT1002_00301 at 326.190 kb on - strand, within MIT1002_00301 at 326.322 kb on - strand at 326.365 kb on - strand at 326.378 kb on - strand at 326.595 kb on - strand, within MIT1002_00302 at 326.653 kb on + strand, within MIT1002_00302
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6 remove 324,484 + MIT1002_00299 0.20 +1.1 324,484 + MIT1002_00299 0.20 +1.3 324,484 + MIT1002_00299 0.20 +0.1 324,492 - MIT1002_00299 0.21 +1.1 324,532 - MIT1002_00299 0.26 -0.5 324,615 + MIT1002_00299 0.35 +0.4 324,615 + MIT1002_00299 0.35 +0.0 324,615 + MIT1002_00299 0.35 -0.4 324,637 + MIT1002_00299 0.38 +0.1 324,675 + MIT1002_00299 0.42 +1.3 324,683 + MIT1002_00299 0.43 +0.1 324,683 - MIT1002_00299 0.43 -0.5 324,685 + MIT1002_00299 0.43 +1.0 324,685 + MIT1002_00299 0.43 -2.1 324,685 + MIT1002_00299 0.43 -0.5 324,685 + MIT1002_00299 0.43 +0.4 324,685 + MIT1002_00299 0.43 +0.9 324,685 + MIT1002_00299 0.43 +1.5 324,685 + MIT1002_00299 0.43 +0.1 324,685 + MIT1002_00299 0.43 +0.3 324,693 - MIT1002_00299 0.44 +0.6 324,693 - MIT1002_00299 0.44 +1.6 324,693 - MIT1002_00299 0.44 -1.1 324,693 - MIT1002_00299 0.44 +1.2 324,693 - MIT1002_00299 0.44 -1.0 324,693 - MIT1002_00299 0.44 -0.8 324,693 - MIT1002_00299 0.44 +1.0 324,695 + MIT1002_00299 0.44 +0.8 324,698 - MIT1002_00299 0.45 -0.7 324,703 - MIT1002_00299 0.45 +0.1 324,732 + MIT1002_00299 0.48 +0.6 324,732 + MIT1002_00299 0.48 -0.6 324,732 + MIT1002_00299 0.48 -1.5 324,732 + MIT1002_00299 0.48 -0.6 324,732 + MIT1002_00299 0.48 +0.4 324,732 + MIT1002_00299 0.48 +0.0 324,732 + MIT1002_00299 0.48 -2.6 324,732 + MIT1002_00299 0.48 +0.3 324,740 - MIT1002_00299 0.49 -0.2 324,740 - MIT1002_00299 0.49 +2.7 324,767 - MIT1002_00299 0.52 -1.5 324,767 - MIT1002_00299 0.52 +2.6 324,814 + MIT1002_00299 0.58 -0.5 324,822 - MIT1002_00299 0.59 -0.5 324,827 - MIT1002_00299 0.59 +1.1 324,828 - MIT1002_00299 0.59 +1.4 324,829 + MIT1002_00299 0.59 +1.0 324,829 + MIT1002_00299 0.59 +0.2 324,837 - MIT1002_00299 0.60 +1.1 324,844 + MIT1002_00299 0.61 -0.7 324,844 + MIT1002_00299 0.61 -0.8 324,844 + MIT1002_00299 0.61 -2.2 324,844 + MIT1002_00299 0.61 -0.0 324,844 + MIT1002_00299 0.61 -0.4 324,844 + MIT1002_00299 0.61 +1.3 324,844 + MIT1002_00299 0.61 -0.0 324,852 - MIT1002_00299 0.62 +0.1 324,852 - MIT1002_00299 0.62 +1.0 324,852 - MIT1002_00299 0.62 -0.9 324,852 - MIT1002_00299 0.62 +0.6 324,936 + MIT1002_00299 0.72 -0.0 324,946 + MIT1002_00299 0.73 +1.4 324,948 + MIT1002_00299 0.73 +0.2 324,953 + MIT1002_00299 0.74 -1.8 324,954 - MIT1002_00299 0.74 -2.5 324,961 + MIT1002_00299 0.75 -0.4 324,961 + MIT1002_00299 0.75 +1.1 324,964 - MIT1002_00299 0.75 -0.9 324,964 - MIT1002_00299 0.75 -1.1 324,964 - MIT1002_00299 0.75 +1.2 324,969 - MIT1002_00299 0.75 -0.4 324,970 + MIT1002_00299 0.76 -2.9 324,970 + MIT1002_00299 0.76 +0.5 324,970 + MIT1002_00299 0.76 +3.0 324,970 + MIT1002_00299 0.76 +0.7 324,970 + MIT1002_00299 0.76 -0.5 324,978 - MIT1002_00299 0.76 -0.8 324,978 - MIT1002_00299 0.76 -1.2 324,978 - MIT1002_00299 0.76 +1.2 324,978 - MIT1002_00299 0.76 -1.0 324,978 - MIT1002_00299 0.76 +0.8 324,980 - MIT1002_00299 0.77 -0.6 324,980 - MIT1002_00299 0.77 +2.0 325,014 + MIT1002_00299 0.81 -0.1 325,016 + MIT1002_00299 0.81 -2.4 325,016 + MIT1002_00299 0.81 -1.6 325,037 + MIT1002_00299 0.83 +0.5 325,038 - MIT1002_00299 0.83 -0.7 325,045 - MIT1002_00299 0.84 -0.2 325,047 + MIT1002_00299 0.84 -0.8 325,047 + MIT1002_00299 0.84 +2.0 325,047 + MIT1002_00299 0.84 -1.1 325,047 + MIT1002_00299 0.84 -0.3 325,049 + MIT1002_00299 0.85 -0.9 325,049 + MIT1002_00299 0.85 -1.0 325,049 + MIT1002_00299 0.85 +1.4 325,049 + MIT1002_00299 0.85 +0.9 325,049 + MIT1002_00299 0.85 +0.7 325,055 - MIT1002_00299 0.85 -0.0 325,055 - MIT1002_00299 0.85 -0.4 325,055 - MIT1002_00299 0.85 +2.5 325,055 - MIT1002_00299 0.85 -0.5 325,055 - MIT1002_00299 0.85 -1.1 325,055 - MIT1002_00299 0.85 -0.5 325,055 - MIT1002_00299 0.85 +0.8 325,057 - MIT1002_00299 0.85 -1.7 325,057 - MIT1002_00299 0.85 -0.2 325,057 - MIT1002_00299 0.85 +0.1 325,057 - MIT1002_00299 0.85 -0.7 325,057 - MIT1002_00299 0.85 -1.9 325,116 - +0.5 325,127 - -2.8 325,127 - -1.0 325,131 + -1.7 325,131 + -0.0 325,132 - -0.2 325,138 - +0.6 325,140 - +0.2 325,150 - -0.2 325,154 + -0.6 325,157 - +2.1 325,164 - +1.6 325,277 - +0.5 325,286 - +0.5 325,308 + -2.0 325,337 + -1.4 325,337 + -0.8 325,337 + -1.1 325,337 + -0.1 325,337 + +0.8 325,337 + -1.1 325,337 + +1.9 325,345 - -1.5 325,345 - -0.5 325,345 - -0.2 325,345 - -0.7 325,345 - +1.9 325,356 + -0.2 325,357 - +1.0 325,364 - +2.1 325,379 + +2.0 325,390 + +1.0 325,390 + +0.7 325,391 + -0.4 325,392 + -2.1 325,393 - -1.7 325,399 - +1.2 325,400 - -1.6 325,404 + -0.2 325,404 + -0.7 325,411 - +0.4 325,412 - +2.9 325,432 + +0.5 325,504 - MIT1002_00300 0.15 -1.0 325,549 - MIT1002_00300 0.33 -2.2 325,633 - MIT1002_00300 0.68 +1.4 325,635 - MIT1002_00300 0.69 -0.3 325,733 + -0.4 325,733 + +1.7 325,738 + +1.4 325,739 + +2.0 325,739 + -0.5 325,772 - +1.1 325,773 - -1.0 325,802 + -0.2 325,857 - -0.1 325,867 + -1.4 325,876 + +0.3 325,880 + +0.8 325,882 + -1.2 325,887 + -1.0 325,890 - +1.4 325,890 - -1.0 325,892 + -0.2 325,892 + +0.1 325,892 + -1.2 325,892 + -0.5 325,894 + +0.6 325,895 - -0.3 325,895 - -1.8 325,900 - -1.7 325,908 - +1.3 325,927 - +2.4 325,942 - -0.5 325,950 - -0.2 325,952 + -1.0 325,952 + -1.6 325,954 + -0.8 325,954 + +1.0 325,954 + -1.0 325,954 + -2.4 325,954 + -0.3 325,960 - -0.8 325,960 - -1.1 325,962 - -1.6 325,962 - -1.1 325,962 - -0.4 325,962 - +1.3 325,962 - +1.9 325,962 - +1.1 325,962 - +0.4 325,962 - -0.3 325,999 + MIT1002_00301 0.18 +0.5 325,999 + MIT1002_00301 0.18 -0.1 326,007 - MIT1002_00301 0.20 +0.0 326,007 - MIT1002_00301 0.20 -0.3 326,007 - MIT1002_00301 0.20 -1.0 326,007 - MIT1002_00301 0.20 -2.3 326,017 + MIT1002_00301 0.22 -1.5 326,025 - MIT1002_00301 0.24 +2.0 326,025 - MIT1002_00301 0.24 +1.7 326,025 - MIT1002_00301 0.24 +0.3 326,025 - MIT1002_00301 0.24 +0.6 326,025 - MIT1002_00301 0.24 -0.1 326,025 - MIT1002_00301 0.24 +0.1 326,025 - MIT1002_00301 0.24 +2.3 326,050 + MIT1002_00301 0.30 +0.8 326,057 - MIT1002_00301 0.32 -1.5 326,057 - MIT1002_00301 0.32 -1.1 326,103 + MIT1002_00301 0.43 -0.1 326,103 + MIT1002_00301 0.43 +0.0 326,103 + MIT1002_00301 0.43 +0.9 326,103 + MIT1002_00301 0.43 +1.0 326,103 + MIT1002_00301 0.43 +0.6 326,103 + MIT1002_00301 0.43 -1.8 326,111 - MIT1002_00301 0.45 -1.3 326,111 - MIT1002_00301 0.45 -0.3 326,190 - MIT1002_00301 0.64 +0.0 326,322 - +0.8 326,365 - -1.5 326,378 - +2.1 326,595 - MIT1002_00302 0.17 -0.4 326,653 + MIT1002_00302 0.21 -0.6
Or see this region's nucleotide sequence