Experiment: monoculture; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00268 and MIT1002_00269 overlap by 1 nucleotides MIT1002_00269 and MIT1002_00270 overlap by 4 nucleotides MIT1002_00270 and MIT1002_00271 are separated by 12 nucleotides
MIT1002_00268: MIT1002_00268 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 293,624 to 295,558
_00268
MIT1002_00269: MIT1002_00269 - hypothetical protein, at 295,558 to 296,316
_00269
MIT1002_00270: MIT1002_00270 - Class III cytochrome C family protein, at 296,313 to 297,107
_00270
MIT1002_00271: MIT1002_00271 - hypothetical protein, at 297,120 to 298,343
_00271
Position (kb) 295
296
297 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 294.583 kb on - strand, within MIT1002_00268 at 294.588 kb on - strand, within MIT1002_00268 at 294.644 kb on - strand, within MIT1002_00268 at 294.644 kb on - strand, within MIT1002_00268 at 294.644 kb on - strand, within MIT1002_00268 at 294.687 kb on - strand, within MIT1002_00268 at 294.695 kb on - strand, within MIT1002_00268 at 294.695 kb on - strand, within MIT1002_00268 at 294.702 kb on + strand, within MIT1002_00268 at 294.720 kb on - strand, within MIT1002_00268 at 294.750 kb on + strand, within MIT1002_00268 at 294.797 kb on - strand, within MIT1002_00268 at 294.842 kb on + strand, within MIT1002_00268 at 294.842 kb on + strand, within MIT1002_00268 at 294.842 kb on + strand, within MIT1002_00268 at 294.842 kb on + strand, within MIT1002_00268 at 294.847 kb on + strand, within MIT1002_00268 at 294.850 kb on - strand, within MIT1002_00268 at 294.850 kb on - strand, within MIT1002_00268 at 294.850 kb on - strand, within MIT1002_00268 at 294.850 kb on - strand, within MIT1002_00268 at 294.900 kb on - strand, within MIT1002_00268 at 295.028 kb on + strand, within MIT1002_00268 at 295.038 kb on + strand, within MIT1002_00268 at 295.041 kb on - strand, within MIT1002_00268 at 295.054 kb on + strand, within MIT1002_00268 at 295.062 kb on - strand, within MIT1002_00268 at 295.228 kb on + strand, within MIT1002_00268 at 295.282 kb on + strand, within MIT1002_00268 at 295.284 kb on - strand, within MIT1002_00268 at 295.290 kb on - strand, within MIT1002_00268 at 295.290 kb on - strand, within MIT1002_00268 at 295.292 kb on + strand, within MIT1002_00268 at 295.292 kb on + strand, within MIT1002_00268 at 295.320 kb on - strand, within MIT1002_00268 at 295.328 kb on + strand, within MIT1002_00268 at 295.328 kb on + strand, within MIT1002_00268 at 295.351 kb on - strand, within MIT1002_00268 at 295.351 kb on - strand, within MIT1002_00268 at 295.358 kb on + strand, within MIT1002_00268 at 295.358 kb on + strand, within MIT1002_00268 at 295.377 kb on + strand at 295.388 kb on + strand at 295.433 kb on - strand at 295.446 kb on + strand at 295.475 kb on + strand at 295.508 kb on + strand at 295.546 kb on + strand at 295.587 kb on - strand at 295.589 kb on + strand at 295.597 kb on + strand at 295.678 kb on + strand, within MIT1002_00269 at 295.678 kb on + strand, within MIT1002_00269 at 295.686 kb on - strand, within MIT1002_00269 at 295.686 kb on - strand, within MIT1002_00269 at 295.686 kb on - strand, within MIT1002_00269 at 295.802 kb on + strand, within MIT1002_00269 at 295.810 kb on + strand, within MIT1002_00269 at 295.815 kb on - strand, within MIT1002_00269 at 295.815 kb on - strand, within MIT1002_00269 at 295.833 kb on + strand, within MIT1002_00269 at 295.841 kb on - strand, within MIT1002_00269 at 295.942 kb on - strand, within MIT1002_00269 at 296.078 kb on - strand, within MIT1002_00269 at 296.078 kb on - strand, within MIT1002_00269 at 296.078 kb on - strand, within MIT1002_00269 at 296.134 kb on + strand, within MIT1002_00269 at 296.170 kb on + strand, within MIT1002_00269 at 296.178 kb on - strand, within MIT1002_00269 at 296.178 kb on - strand, within MIT1002_00269 at 296.205 kb on + strand, within MIT1002_00269 at 296.205 kb on + strand, within MIT1002_00269 at 296.205 kb on + strand, within MIT1002_00269 at 296.205 kb on + strand, within MIT1002_00269 at 296.206 kb on - strand, within MIT1002_00269 at 296.302 kb on - strand at 296.307 kb on - strand at 296.309 kb on + strand at 296.309 kb on + strand at 296.358 kb on - strand at 296.385 kb on + strand at 296.385 kb on + strand at 296.393 kb on - strand, within MIT1002_00270 at 296.445 kb on + strand, within MIT1002_00270 at 296.495 kb on - strand, within MIT1002_00270 at 296.617 kb on - strand, within MIT1002_00270 at 296.758 kb on + strand, within MIT1002_00270 at 296.760 kb on + strand, within MIT1002_00270 at 296.773 kb on - strand, within MIT1002_00270 at 296.781 kb on + strand, within MIT1002_00270 at 296.786 kb on + strand, within MIT1002_00270 at 296.787 kb on - strand, within MIT1002_00270 at 296.836 kb on - strand, within MIT1002_00270 at 296.863 kb on - strand, within MIT1002_00270 at 296.876 kb on + strand, within MIT1002_00270 at 296.876 kb on + strand, within MIT1002_00270 at 296.889 kb on + strand, within MIT1002_00270 at 297.043 kb on + strand at 297.101 kb on + strand at 297.101 kb on + strand at 297.101 kb on + strand at 297.109 kb on - strand at 297.148 kb on + strand at 297.168 kb on + strand at 297.176 kb on - strand at 297.222 kb on - strand at 297.299 kb on + strand, within MIT1002_00271 at 297.299 kb on + strand, within MIT1002_00271 at 297.299 kb on + strand, within MIT1002_00271 at 297.299 kb on + strand, within MIT1002_00271 at 297.299 kb on + strand, within MIT1002_00271 at 297.299 kb on + strand, within MIT1002_00271 at 297.307 kb on - strand, within MIT1002_00271 at 297.307 kb on - strand, within MIT1002_00271
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6 remove 294,583 - MIT1002_00268 0.50 +1.5 294,588 - MIT1002_00268 0.50 -0.3 294,644 - MIT1002_00268 0.53 -0.2 294,644 - MIT1002_00268 0.53 -1.1 294,644 - MIT1002_00268 0.53 -0.5 294,687 - MIT1002_00268 0.55 +1.0 294,695 - MIT1002_00268 0.55 +0.2 294,695 - MIT1002_00268 0.55 -1.2 294,702 + MIT1002_00268 0.56 +1.6 294,720 - MIT1002_00268 0.57 -0.5 294,750 + MIT1002_00268 0.58 -0.6 294,797 - MIT1002_00268 0.61 -1.8 294,842 + MIT1002_00268 0.63 -1.4 294,842 + MIT1002_00268 0.63 -0.7 294,842 + MIT1002_00268 0.63 -0.6 294,842 + MIT1002_00268 0.63 -0.6 294,847 + MIT1002_00268 0.63 -0.9 294,850 - MIT1002_00268 0.63 -0.1 294,850 - MIT1002_00268 0.63 -0.8 294,850 - MIT1002_00268 0.63 +0.9 294,850 - MIT1002_00268 0.63 +1.6 294,900 - MIT1002_00268 0.66 -1.4 295,028 + MIT1002_00268 0.73 +0.4 295,038 + MIT1002_00268 0.73 -0.4 295,041 - MIT1002_00268 0.73 +0.4 295,054 + MIT1002_00268 0.74 -0.3 295,062 - MIT1002_00268 0.74 +0.1 295,228 + MIT1002_00268 0.83 -0.9 295,282 + MIT1002_00268 0.86 -1.1 295,284 - MIT1002_00268 0.86 -0.2 295,290 - MIT1002_00268 0.86 +1.7 295,290 - MIT1002_00268 0.86 +0.6 295,292 + MIT1002_00268 0.86 +1.7 295,292 + MIT1002_00268 0.86 -0.6 295,320 - MIT1002_00268 0.88 -0.4 295,328 + MIT1002_00268 0.88 -0.4 295,328 + MIT1002_00268 0.88 -1.8 295,351 - MIT1002_00268 0.89 +1.8 295,351 - MIT1002_00268 0.89 -0.4 295,358 + MIT1002_00268 0.90 -0.4 295,358 + MIT1002_00268 0.90 -0.2 295,377 + -0.6 295,388 + +0.2 295,433 - -0.0 295,446 + +11.3 295,475 + -0.1 295,508 + +0.8 295,546 + +2.0 295,587 - -0.0 295,589 + +0.3 295,597 + -0.1 295,678 + MIT1002_00269 0.16 -1.0 295,678 + MIT1002_00269 0.16 +0.5 295,686 - MIT1002_00269 0.17 -2.5 295,686 - MIT1002_00269 0.17 +2.5 295,686 - MIT1002_00269 0.17 -0.6 295,802 + MIT1002_00269 0.32 -0.4 295,810 + MIT1002_00269 0.33 -0.6 295,815 - MIT1002_00269 0.34 +0.4 295,815 - MIT1002_00269 0.34 +3.0 295,833 + MIT1002_00269 0.36 -0.7 295,841 - MIT1002_00269 0.37 -0.9 295,942 - MIT1002_00269 0.51 -2.4 296,078 - MIT1002_00269 0.69 -0.6 296,078 - MIT1002_00269 0.69 -0.3 296,078 - MIT1002_00269 0.69 +0.5 296,134 + MIT1002_00269 0.76 -1.6 296,170 + MIT1002_00269 0.81 +1.0 296,178 - MIT1002_00269 0.82 -1.9 296,178 - MIT1002_00269 0.82 -0.4 296,205 + MIT1002_00269 0.85 -0.6 296,205 + MIT1002_00269 0.85 -0.6 296,205 + MIT1002_00269 0.85 +0.2 296,205 + MIT1002_00269 0.85 -1.5 296,206 - MIT1002_00269 0.85 +1.1 296,302 - +3.0 296,307 - -0.8 296,309 + -0.1 296,309 + -1.0 296,358 - -1.6 296,385 + +1.9 296,385 + -0.0 296,393 - MIT1002_00270 0.10 +1.6 296,445 + MIT1002_00270 0.17 -0.7 296,495 - MIT1002_00270 0.23 +0.2 296,617 - MIT1002_00270 0.38 +1.0 296,758 + MIT1002_00270 0.56 -0.5 296,760 + MIT1002_00270 0.56 -0.2 296,773 - MIT1002_00270 0.58 +2.0 296,781 + MIT1002_00270 0.59 -0.6 296,786 + MIT1002_00270 0.59 -0.2 296,787 - MIT1002_00270 0.60 +0.8 296,836 - MIT1002_00270 0.66 -1.4 296,863 - MIT1002_00270 0.69 +0.0 296,876 + MIT1002_00270 0.71 -0.4 296,876 + MIT1002_00270 0.71 -0.5 296,889 + MIT1002_00270 0.72 +0.8 297,043 + +0.5 297,101 + -0.3 297,101 + +0.5 297,101 + +0.1 297,109 - +0.0 297,148 + +2.0 297,168 + -1.3 297,176 - -0.3 297,222 - +0.6 297,299 + MIT1002_00271 0.15 +0.7 297,299 + MIT1002_00271 0.15 +0.4 297,299 + MIT1002_00271 0.15 +0.5 297,299 + MIT1002_00271 0.15 +0.8 297,299 + MIT1002_00271 0.15 +1.8 297,299 + MIT1002_00271 0.15 +2.1 297,307 - MIT1002_00271 0.15 +2.4 297,307 - MIT1002_00271 0.15 -1.1
Or see this region's nucleotide sequence